Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G081660 Manihot esculenta HOM05D005994 ORTHO05D007322 5.3e-56 220.7 106 100.0
Gohir.A06G204600 Gossypium hirsutum HOM05D005994 ORTHO05D007322 5.2e-51 204.1 106 92.5
Thecc.06G236600 Theobroma cacao HOM05D005994 ORTHO05D007322 5.2e-51 204.1 106 92.5
Gohir.D06G216900 Gossypium hirsutum HOM05D005994 ORTHO05D007322 1.5e-50 202.6 106 91.5
Duzib235G0800 Durio zibethinus HOM05D005994 ORTHO05D007322 2.6e-50 201.8 106 91.5
Potri.006G016300 Populus trichocarpa HOM05D005994 ORTHO05D007322 2.6e-50 201.8 106 91.5
Gorai.010G249300 Gossypium raimondii HOM05D005994 ORTHO05D007322 4.4e-50 201.1 106 90.6
COL.COLO4_07784 Corchorus olitorius HOM05D005994 ORTHO05D007322 5.7e-50 200.7 106 90.6
Duzib192G0253 Durio zibethinus HOM05D005994 ORTHO05D007322 1.7e-49 199.1 106 90.6
TWI63G1647 Tripterygium wilfordii HOM05D005994 ORTHO05D007322 3.1e-48 194.9 103 90.3
Sabra06G0011700 Salix brachista HOM05D005994 ORTHO05D007322 4.1e-48 194.5 100 93.0
Sed0000308 Sechium edule HOM05D005994 ORTHO05D007322 4.1e-48 194.5 100 93.0
C01p26360 Brassica napus HOM05D005994 ORTHO05D007322 7.0e-48 193.7 103 89.3
BcaNung00192 Brassica carinata HOM05D005994 ORTHO05D007322 9.1e-48 193.4 102 90.2
A01p21090 Brassica napus HOM05D005994 ORTHO05D007322 9.1e-48 193.4 102 90.2
HanXRQChr08g0213481 Helianthus annuus HOM05D005994 ORTHO05D007322 9.1e-48 193.4 100 91.0
ClCG01G010630 Citrullus lanatus HOM05D005994 ORTHO05D007322 1.2e-47 193.0 100 93.0
Sed0000190 Sechium edule HOM05D005994 ORTHO05D007322 1.6e-47 192.6 100 92.0
THA.LOC104810390 Tarenaya hassleriana HOM05D005994 ORTHO05D007322 1.6e-47 192.6 106 86.8
Cc05_g14690 Coffea canephora HOM05D005994 ORTHO05D007322 2.0e-47 192.2 100 92.0
MELO3C025540.2 Cucumis melo HOM05D005994 ORTHO05D007322 2.7e-47 191.8 100 92.0
Sp7g15010 Schrenkiella parvula HOM05D005994 ORTHO05D007322 2.7e-47 191.8 107 87.9
BcaC09g50351 Brassica carinata HOM05D005994 ORTHO05D007322 3.5e-47 191.4 102 89.2
BolC1t02582H Brassica oleracea HOM05D005994 ORTHO05D007322 3.5e-47 191.4 102 89.2
Oeu005968.1 Olea europaea HOM05D005994 ORTHO05D007322 4.5e-47 191.0 103 87.4
Thhalv10026636m.g Eutrema salsugineum HOM05D005994 ORTHO05D007322 5.9e-47 190.7 107 86.9
MSTRG.14470 Avicennia marina HOM05D005994 ORTHO05D007322 7.7e-47 190.3 100 91.0
CSS0045306 Camellia sinensis var. sinensis HOM05D005994 ORTHO05D007322 1.0e-46 189.9 100 91.0
Glyma.09G011900 Glycine max HOM05D005994 ORTHO05D007322 1.3e-46 189.5 100 91.0
Glyma.15G116500 Glycine max HOM05D005994 ORTHO05D007322 1.3e-46 189.5 100 91.0
unitig_747.g21642 Utricularia gibba HOM05D005994 ORTHO05D007322 1.3e-46 189.5 100 91.0
arahy.Tifrunner.gnm1.ann1.CR688Y Arachis hypogaea HOM05D005994 ORTHO05D007322 1.7e-46 189.1 100 89.0
arahy.Tifrunner.gnm1.ann1.R43TP7 Arachis hypogaea HOM05D005994 ORTHO05D007322 1.7e-46 189.1 100 89.0
Lalb_Chr03g0035721 Lupinus albus HOM05D005994 ORTHO05D007322 1.7e-46 189.1 100 91.0
Oeu005493.1 Olea europaea HOM05D005994 ORTHO05D007322 1.7e-46 189.1 101 89.1
Rhsim06G0226700 Rhododendron simsii HOM05D005994 ORTHO05D007322 1.7e-46 189.1 100 91.0
Ah.06g181210 Amaranthus hybridus HOM05D005994 ORTHO05D007322 2.2e-46 188.7 100 91.0
PGR004G2260 Punica granatum HOM05D005994 ORTHO05D007322 2.2e-46 188.7 100 90.0
AL7G38530 Arabidopsis lyrata HOM05D005994 ORTHO05D007322 2.9e-46 188.3 102 87.3
Carub.0007s2505 Capsella rubella HOM05D005994 ORTHO05D007322 2.9e-46 188.3 102 87.3
Nitab4.5_0001750g0060 Nicotiana tabacum HOM05D005994 ORTHO05D007322 2.9e-46 188.3 101 88.1
Sc03g0008000 Simmondsia chinensis HOM05D005994 ORTHO05D007322 2.9e-46 188.3 100 91.0
Sopen07g033490 Solanum pennellii HOM05D005994 ORTHO05D007322 2.9e-46 188.3 97 92.8
Actinidia05033 Actinidia chinensis HOM05D005994 ORTHO05D007322 3.8e-46 188.0 100 89.0
Aa31LG2G12530 Aethionema arabicum HOM05D005994 ORTHO05D007322 3.8e-46 188.0 102 87.3
CANSAT56G3985 Cannabis sativa HOM05D005994 ORTHO05D007322 3.8e-46 188.0 100 90.0
Nitab4.5_0000163g0320 Nicotiana tabacum HOM05D005994 ORTHO05D007322 3.8e-46 188.0 100 89.0
Peaxi162Scf00955g00216 Petunia axillaris HOM05D005994 ORTHO05D007322 3.8e-46 188.0 100 88.0
vmacro11561 Vaccinium macrocarpon HOM05D005994 ORTHO05D007322 3.8e-46 188.0 100 90.0
CiPaw.10G079600 Carya illinoinensis HOM05D005994 ORTHO05D007322 5.0e-46 187.6 95 93.7
Potri.016G009600 Populus trichocarpa HOM05D005994 ORTHO05D007322 5.0e-46 187.6 106 85.8
TPR.G10599 Trifolium pratense HOM05D005994 ORTHO05D007322 5.0e-46 187.6 100 88.0
MSTRG.13010 Avicennia marina HOM05D005994 ORTHO05D007322 6.5e-46 187.2 100 88.0
BcaC06g33480 Brassica carinata HOM05D005994 ORTHO05D007322 6.5e-46 187.2 100 89.0
ECA246G1213 Erigeron canadensis HOM05D005994 ORTHO05D007322 6.5e-46 187.2 100 88.0
Lj6g0002817 Lotus japonicus HOM05D005994 ORTHO05D007322 6.5e-46 187.2 100 90.0
MD00G1058600 Malus domestica HOM05D005994 ORTHO05D007322 6.5e-46 187.2 100 89.0
Aqoxy4G02214 Aquilegia oxysepala HOM05D005994 ORTHO05D007322 8.5e-46 186.8 103 86.4
A03p49850 Brassica napus HOM05D005994 ORTHO05D007322 8.5e-46 186.8 103 88.3
C07p47910 Brassica napus HOM05D005994 ORTHO05D007322 8.5e-46 186.8 103 88.3
BolC7t45314H Brassica oleracea HOM05D005994 ORTHO05D007322 8.5e-46 186.8 103 88.3
BraA03t14080Z Brassica rapa HOM05D005994 ORTHO05D007322 8.5e-46 186.8 103 88.3
Haze_06972 Corylus avellana HOM05D005994 ORTHO05D007322 8.5e-46 186.8 100 88.0
CARHR222840 Cardamine hirsuta HOM05D005994 ORTHO05D007322 1.1e-45 186.4 107 84.1
Solyc07g065275.1 Solanum lycopersicum HOM05D005994 ORTHO05D007322 1.1e-45 186.4 100 88.0
Actinidia00094 Actinidia chinensis HOM05D005994 ORTHO05D007322 1.5e-45 186.0 100 89.0
Phvul.006G141600 Phaseolus vulgaris HOM05D005994 ORTHO05D007322 1.5e-45 186.0 100 89.0
Prupe.4G007400 Prunus persica HOM05D005994 ORTHO05D007322 1.5e-45 186.0 100 89.0
QL05p068624 Quercus lobata HOM05D005994 ORTHO05D007322 1.5e-45 186.0 100 87.0
QL05p068978 Quercus lobata HOM05D005994 ORTHO05D007322 1.5e-45 186.0 100 87.0
Hund23128 Selenicereus undatus HOM05D005994 ORTHO05D007322 1.5e-45 186.0 100 89.0
SGA_v2.0_scaffold168G38531 Striga asiatica HOM05D005994 ORTHO05D007322 1.5e-45 186.0 100 89.0
EL10Ac4g07614 Beta vulgaris HOM05D005994 ORTHO05D007322 1.9e-45 185.7 100 89.0
Migut.M01676 Erythranthe guttata HOM05D005994 ORTHO05D007322 1.9e-45 185.7 100 88.0
AT4G16450 Arabidopsis thaliana HOM05D005994 ORTHO05D007322 2.5e-45 185.3 102 86.3
FAN25G0933 Fragaria x ananassa HOM05D005994 ORTHO05D007322 2.5e-45 185.3 100 87.0
RcHm_v2.0_Chr5g0000881 Rosa chinensis HOM05D005994 ORTHO05D007322 2.5e-45 185.3 100 87.0
vmacro09668 Vaccinium macrocarpon HOM05D005994 ORTHO05D007322 2.5e-45 185.3 100 87.0
VMungo0540G2179 Vigna mungo HOM05D005994 ORTHO05D007322 2.5e-45 185.3 104 85.6
PGSC0003DMG400022186 Solanum tuberosum HOM05D005994 ORTHO05D007322 3.2e-45 184.9 97 90.7
Lalb_Chr19g0129971 Lupinus albus HOM05D005994 ORTHO05D007322 4.2e-45 184.5 100 87.0
THA.LOC104815483 Tarenaya hassleriana HOM05D005994 ORTHO05D007322 4.2e-45 184.5 107 84.1
Nitab4.5_0000461g0100 Nicotiana tabacum HOM05D005994 ORTHO05D007322 7.2e-45 183.7 99 87.9
FAN21G1761 Fragaria x ananassa HOM05D005994 ORTHO05D007322 9.5e-45 183.3 100 86.0
GSVIVG01037779001 Vitis vinifera HOM05D005994 ORTHO05D007322 9.5e-45 183.3 100 88.0
AUR62017059 Chenopodium quinoa HOM05D005994 ORTHO05D007322 1.2e-44 183.0 100 87.0
Sabra16G0013400 Salix brachista HOM05D005994 ORTHO05D007322 1.2e-44 183.0 95 91.6
CsaV3_1G017030 Cucumis sativus L. HOM05D005994 ORTHO05D007322 1.6e-44 182.6 94 92.6
CsaV3_UNG053450 Cucumis sativus L. HOM05D005994 ORTHO05D007322 1.6e-44 182.6 94 92.6
Medtr2g026500 Medicago truncatula HOM05D005994 ORTHO05D007322 1.6e-44 182.6 100 85.0
Ah.04g166430 Amaranthus hybridus HOM05D000063 ORTHO05D000906 2.1e-44 182.2 94 91.5
MD10G1336200 Malus domestica HOM05D005994 ORTHO05D007322 2.1e-44 182.2 100 87.0
Cfa000074 Carpinus fangiana HOM05D005994 ORTHO05D007322 2.8e-44 181.8 100 86.0
Os08g0431500 Oryza sativa ssp. japonica HOM05D005994 ORTHO05D007322 2.8e-44 181.8 99 86.9
CAN.G337.28 Capsicum annuum HOM05D005994 ORTHO05D007322 3.6e-44 181.4 97 88.7
DCAR_013214 Daucus carota HOM05D005994 ORTHO05D007322 3.6e-44 181.4 100 84.0
Ciclev10016738m.g Citrus clementina HOM05D005994 ORTHO05D007322 4.7e-44 181.0 130 71.5
PSO063G2191 Papaver somniferum HOM05D005994 ORTHO05D007322 6.1e-44 180.6 101 85.1
Eucgr.D00619 Eucalyptus grandis HOM05D005994 ORTHO05D007322 8.0e-44 180.3 99 85.9
CDE12G0176 Ceratophyllum demersum HOM05D005994 ORTHO05D007322 1.4e-43 179.5 100 85.0
AUR62040659 Chenopodium quinoa HOM05D005994 ORTHO05D007322 1.4e-43 179.5 100 86.0
ATR0564G257 Amborella trichopoda HOM05D005994 ORTHO05D007322 1.8e-43 179.1 100 85.0
Lsat_1_v5_gn_5_8041 Lactuca sativa HOM05D000063 ORTHO05D000906 1.8e-43 179.1 97 86.6
Ca_00743_v3 Cicer arietinum L. HOM05D005994 ORTHO05D007322 2.3e-43 178.7 100 84.0
Zm00001eb179550 Zea mays HOM05D005994 ORTHO05D007322 2.3e-43 178.7 99 85.9
MBI04_g07210_MAGBIO Magnolia biondii HOM05D005994 ORTHO05D007322 5.2e-43 177.6 94 90.4
PSO832G1566 Papaver somniferum HOM05D005994 ORTHO05D007322 5.2e-43 177.6 101 84.2
Psat1g178480 Pisum sativum HOM05D005994 ORTHO05D007322 5.2e-43 177.6 95 88.4
FvH4_3g00660 Fragaria vesca HOM05D005994 ORTHO05D007322 8.8e-43 176.8 94 88.3
CDE01G0018 Ceratophyllum demersum HOM05D005994 ORTHO05D007322 2.0e-42 175.6 100 84.0
HPP92_013264 Vanilla planifolia HOM05D005994 ORTHO05D007322 2.8e-41 171.8 99 82.8
Peaxi162Scf00285g00824 Petunia axillaris HOM05D005994 ORTHO05D007322 3.3e-37 158.3 97 81.4
Atru.chr1.2350 Acer truncatum HOM05D005994 ORTHO05D007322 3.0e-35 151.8 106 73.6
MBI04_g36325_MAGBIO Magnolia biondii HOM05D005994 ORTHO05D007322 4.9e-33 144.4 100 74.0
SEGI_25373 Sequoiadendron giganteum HOM05D005994 ORTHO05D007322 5.6e-29 131.0 78 79.5
Mapoly0008s0024 Marchantia polymorpha HOM05D005994 ORTHO05D007322 3.4e-26 121.7 91 63.7
Pp3c6_28950 Physcomitrium patens HOM05D005994 ORTHO05D007322 6.4e-25 117.5 91 59.3
SEGI_29999 Sequoiadendron giganteum HOM05D005994 ORTHO05D007322 3.5e-23 111.7 91 57.1
AagrBONN_evm.TU.Sc2ySwM_368.698 Anthoceros agrestis HOM05D005994 ORTHO05D007322 1.7e-22 109.4 90 55.6
CBR_g41406 Chara braunii HOM05D005994 ORTHO05D007322 4.3e-21 104.8 90 56.7
AagrBONN_evm.TU.Sc2ySwM_117.3129 Anthoceros agrestis HOM05D005994 ORTHO05D007322 1.6e-20 102.8 90 55.6
MCO11G626 Micromonas commoda HOM05D005994 ORTHO05D007322 2.8e-20 102.1 87 59.8
Medtr2g097750 Medicago truncatula HOM05D005994 ORTHO05D007322 1.4e-19 99.8 59 79.7
Cpa.g.sc3096.1 Carica papaya HOM05D005994 ORTHO05D007322 1.8e-19 99.4 59 78.0
Nn5g27130 Nelumbo nucifera HOM05D005994 ORTHO05D007322 2.0e-18 95.9 52 86.5
TAR626G0394 Trochodendron aralioides HOM05D005994 ORTHO05D007322 9.8e-18 93.6 51 84.3
SMO223G0003 Selaginella moellendorffii HOM05D005994 ORTHO05D007322 4.1e-16 88.2 87 50.6
HanXRQChr17g0564261 Helianthus annuus HOM05D005994 ORTHO05D007322 1.6e-15 86.3 48 83.3
Dinv10313 Davidia involucrata HOM05D005994 ORTHO05D007322 7.8e-15 84.0 94 52.1
Nitab4.5_0000607g0040 Nicotiana tabacum HOM05D006135 ORTHO05D007533 1.3e-14 83.2 51 74.5
Nitab4.5_0005540g0030 Nicotiana tabacum HOM05D005994 ORTHO05D007322 1.3e-14 83.2 52 76.9
Zm00001eb041720 Zea mays HOM05D005994 ORTHO05D007322 9.5e-13 77.0 55 65.5
TAR627G0003 Trochodendron aralioides HOM05D005994 ORTHO05D007322 9.9e-10 67.0 43 74.4


User provided reference genes

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