Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G081644 Manihot esculenta HOM05D000003 ORTHO05D000004 6.9e-63 243.8 124 100.0
Manes.11G132650 Manihot esculenta HOM05D000003 ORTHO05D000004 1.2e-22 110.2 132 45.5
Manes.08G120011 Manihot esculenta HOM05D000003 ORTHO05D000004 5.0e-21 104.8 95 57.9
CARHR248000 Cardamine hirsuta HOM05D000003 ORTHO05D000004 8.3e-16 87.4 124 37.1
TWI31G1141 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 2.5e-12 75.9 140 31.4
Rhsim05G0149000 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.2e-11 73.6 138 35.5
CANSAT35G1017 Cannabis sativa HOM05D000003 ORTHO05D000004 6.1e-11 71.2 137 34.3
QL03p033496 Quercus lobata HOM05D000003 ORTHO05D000004 6.1e-11 71.2 173 29.5
CANSAT25G0256 Cannabis sativa HOM05D000003 ORTHO05D000004 1.0e-10 70.5 143 34.3
RcHm_v2.0_Chr1g0340391 Rosa chinensis HOM05D000003 ORTHO05D000004 1.0e-10 70.5 173 27.7
Manes.15G164550 Manihot esculenta HOM05D000003 ORTHO05D000004 1.4e-10 70.1 128 35.2
TPR.G29120 Trifolium pratense HOM05D000003 ORTHO05D000004 1.8e-10 69.7 96 39.6
TAR021G0001 Trochodendron aralioides HOM05D000003 ORTHO05D000004 2.3e-10 69.3 120 35.0
Atru.chr1.2568 Acer truncatum HOM05D000003 ORTHO05D000004 3.0e-10 68.9 96 38.5
Rhsim10G0167400 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.0e-10 68.9 173 27.7
CANSAT56G2299 Cannabis sativa HOM05D000003 ORTHO05D000004 4.0e-10 68.6 171 31.0
TWI23G1168 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 4.0e-10 68.6 173 27.2
Aa31LG8G11510 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.2e-10 68.2 171 27.5
Aa31sc594G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.8e-10 67.8 171 26.9
Aa31LG7G3330 Aethionema arabicum HOM05D000003 ORTHO05D000004 8.8e-10 67.4 171 26.9
TPR.G852 Trifolium pratense HOM05D000003 ORTHO05D000004 1.2e-09 67.0 173 24.9
Ah.01g015670 Amaranthus hybridus HOM05D000003 ORTHO05D000004 1.5e-09 66.6 96 39.6
Rhsim07G0140700 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.5e-09 66.6 96 42.7
TPR.G13108 Trifolium pratense HOM05D000003 ORTHO05D000004 2.0e-09 66.2 96 36.5
Atru.chr3.1567 Acer truncatum HOM05D000003 ORTHO05D000004 4.4e-09 65.1 96 34.4
Atru.chr3.1587 Acer truncatum HOM05D000003 ORTHO05D000004 4.4e-09 65.1 96 34.4
Atru.chr3.2157 Acer truncatum HOM05D000003 ORTHO05D000004 4.4e-09 65.1 173 27.7
CANSAT35G1614 Cannabis sativa HOM05D000003 ORTHO05D000004 4.4e-09 65.1 137 32.1
Atru.chr10.527 Acer truncatum HOM05D000003 ORTHO05D000004 5.7e-09 64.7 96 37.5
Atru.chr6.490 Acer truncatum HOM05D000003 ORTHO05D000004 5.7e-09 64.7 173 29.5
Rhsim01G0173900 Rhododendron simsii HOM05D000003 ORTHO05D000004 5.7e-09 64.7 96 38.5
TPR.G36801 Trifolium pratense HOM05D000003 ORTHO05D000004 5.7e-09 64.7 173 23.7
Atru.chr1.2485 Acer truncatum HOM05D000003 ORTHO05D000004 7.5e-09 64.3 96 38.5
Atru.chr2.1763 Acer truncatum HOM05D000003 ORTHO05D000004 7.5e-09 64.3 96 35.4
Atru.chr5.1907 Acer truncatum HOM05D000003 ORTHO05D000004 7.5e-09 64.3 173 26.6
Aa31LG10G2340 Aethionema arabicum HOM05D000003 ORTHO05D000004 7.5e-09 64.3 172 27.9
Aa31sc210G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 7.5e-09 64.3 172 27.9
FvH4_3g25262 Fragaria vesca HOM05D000003 ORTHO05D000004 9.8e-09 63.9 117 34.2
Rhsim11G0146500 Rhododendron simsii HOM05D000003 ORTHO05D000004 9.8e-09 63.9 171 27.5
Atru.chr7.591 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-08 63.5 173 27.7
CANSAT78G1465 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-08 63.5 90 44.4
Atru.chr11.920 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-08 63.2 96 36.5
Atru.chr7.811 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-08 63.2 173 27.2
CANSAT01G2953 Cannabis sativa HOM05D000003 ORTHO05D000004 1.7e-08 63.2 90 43.3
TPR.G10774 Trifolium pratense HOM05D000003 ORTHO05D000004 1.7e-08 63.2 173 27.2
TPR.G31113 Trifolium pratense HOM05D000003 ORTHO05D000004 1.7e-08 63.2 173 24.3
TPR.G7198 Trifolium pratense HOM05D000003 ORTHO05D000004 1.7e-08 63.2 96 39.6
TWI31G0724 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.7e-08 63.2 173 28.3
Atru.chr13.1830 Acer truncatum HOM05D000003 ORTHO05D000004 2.2e-08 62.8 170 27.6
Atru.chr2.48 Acer truncatum HOM05D000003 ORTHO05D000004 2.2e-08 62.8 138 34.1
CANSAT01G0249 Cannabis sativa HOM05D000003 ORTHO05D000004 2.2e-08 62.8 171 28.7
Lj6g0015390 Lotus japonicus HOM05D000003 ORTHO05D000004 2.2e-08 62.8 96 38.5
Atru.chr13.1500 Acer truncatum HOM05D000003 ORTHO05D000004 2.8e-08 62.4 173 29.5
Aa31LG4G19060 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.8e-08 62.4 172 26.2
CANSAT11G0402 Cannabis sativa HOM05D000003 ORTHO05D000004 3.7e-08 62.0 90 43.3
Lj1g0015020 Lotus japonicus HOM05D000003 ORTHO05D001406 3.7e-08 62.0 96 36.5
QL05p051227 Quercus lobata HOM05D000003 ORTHO05D000004 3.7e-08 62.0 173 24.9
RcHm_v2.0_Chr7g0236061 Rosa chinensis HOM05D000003 ORTHO05D000004 3.7e-08 62.0 173 26.0
TWI81G0116 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 3.7e-08 62.0 94 36.2
Rhsim04G0176200 Rhododendron simsii HOM05D000003 ORTHO05D000004 4.9e-08 61.6 94 38.3
TPR.G35097 Trifolium pratense HOM05D000003 ORTHO05D000004 4.9e-08 61.6 173 24.9
Atru.chr6.2073 Acer truncatum HOM05D000003 ORTHO05D000004 6.3e-08 61.2 171 27.5
CANSAT54G2337 Cannabis sativa HOM05D000003 ORTHO05D000004 6.3e-08 61.2 102 35.3
FvH4_3g29621 Fragaria vesca HOM05D000003 ORTHO05D000004 6.3e-08 61.2 96 37.5
Rhsim04G0083800 Rhododendron simsii HOM05D000003 ORTHO05D000006 6.3e-08 61.2 96 37.5
CANSAT21G0988 Cannabis sativa HOM05D000003 ORTHO05D000004 8.3e-08 60.8 167 29.3
PSO356G0060 Papaver somniferum HOM05D000003 ORTHO05D000004 8.3e-08 60.8 120 30.8
Rhsim13G0210000 Rhododendron simsii HOM05D000003 ORTHO05D000004 8.3e-08 60.8 96 36.5
Atru.chr1.2596 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-07 60.5 94 37.2
Atru.chr11.973 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-07 60.5 96 35.4
Aa31csc275G20 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.1e-07 60.5 171 25.7
CANSAT64G1526 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-07 60.5 167 28.7
CANSAT78G0884 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-07 60.5 171 27.5
TPR.G22130 Trifolium pratense HOM05D000003 ORTHO05D000004 1.1e-07 60.5 172 25.0
TWI12G0720 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.1e-07 60.5 96 33.3
TAR133G0004 Trochodendron aralioides HOM05D000003 ORTHO05D000004 1.1e-07 60.5 163 28.2
Atru.chr11.265 Acer truncatum HOM05D000003 ORTHO05D000004 1.4e-07 60.1 173 28.9
Aa31sc1015G20 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.4e-07 60.1 152 26.3
CANSAT64G0360 Cannabis sativa HOM05D000003 ORTHO05D000004 1.4e-07 60.1 95 31.6
CANSAT64G2141 Cannabis sativa HOM05D000003 ORTHO05D000004 1.4e-07 60.1 171 26.3
CANSAT78G2353 Cannabis sativa HOM05D000003 ORTHO05D000004 1.4e-07 60.1 94 34.0
FvH4_4g33331 Fragaria vesca HOM05D000003 ORTHO05D000004 1.4e-07 60.1 173 27.7
QL01p036379 Quercus lobata HOM05D000003 ORTHO05D000004 1.4e-07 60.1 172 26.7
Rhsim01G0174200 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.4e-07 60.1 124 31.5
Rhsim02G0086600 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.4e-07 60.1 171 28.7
TPR.G31746 Trifolium pratense HOM05D000003 ORTHO05D000004 1.4e-07 60.1 114 33.3
CANSAT78G0390 Cannabis sativa HOM05D000003 ORTHO05D000004 1.8e-07 59.7 90 37.8
Prupe.5G070700 Prunus persica HOM05D000003 ORTHO05D000004 1.8e-07 59.7 95 34.7
Rhsim08G0109800 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.8e-07 59.7 171 28.7
Rhsim10G0105300 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.8e-07 59.7 96 36.5
TAR682G0003 Trochodendron aralioides HOM05D000003 ORTHO05D000004 1.8e-07 59.7 170 26.5
Atru.chr5.1622 Acer truncatum HOM05D000003 ORTHO05D000004 2.4e-07 59.3 173 26.0
MD08G1205700 Malus domestica HOM05D000003 ORTHO05D000004 2.4e-07 59.3 170 27.1
RcHm_v2.0_Chr4g0410641 Rosa chinensis HOM05D000003 ORTHO05D000004 2.4e-07 59.3 171 24.6
TPR.G27992 Trifolium pratense HOM05D000003 ORTHO05D000004 2.4e-07 59.3 114 32.5
Atru.chr11.799 Acer truncatum HOM05D000003 ORTHO05D000004 3.1e-07 58.9 96 35.4
Aa31LG2G16130 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.1e-07 58.9 160 28.1
Aa31LG2G16390 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.1e-07 58.9 171 26.3
CANSAT11G0486 Cannabis sativa HOM05D000003 ORTHO05D000004 3.1e-07 58.9 94 37.2
CANSAT64G1449 Cannabis sativa HOM05D000003 ORTHO05D000004 3.1e-07 58.9 94 34.0
FvH4_7g16451 Fragaria vesca HOM05D000003 ORTHO05D000004 3.1e-07 58.9 171 24.0
PSO832G0780 Papaver somniferum HOM05D000003 ORTHO05D000004 3.1e-07 58.9 110 33.6
Rhsim02G0183800 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.1e-07 58.9 171 26.9
Rhsim07G0204900 Rhododendron simsii HOM05D001790 ORTHO05D007425 3.1e-07 58.9 173 24.9
Rhsim04G0067000 Rhododendron simsii HOM05D000003 ORTHO05D000004 4.1e-07 58.5 164 27.4
Atru.chr7.663 Acer truncatum HOM05D000003 ORTHO05D000004 5.4e-07 58.2 96 35.4
Aa31LG11G7720 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.4e-07 58.2 94 35.1
CANSAT01G2509 Cannabis sativa HOM05D000003 ORTHO05D000004 5.4e-07 58.2 167 28.7
Rhsim03G0112800 Rhododendron simsii HOM05D000003 ORTHO05D000004 5.4e-07 58.2 171 26.3
RcHm_v2.0_Chr5g0016681 Rosa chinensis HOM05D000003 ORTHO05D000004 5.4e-07 58.2 171 26.3
Atru.chr13.2346 Acer truncatum HOM05D000003 ORTHO05D000004 7.0e-07 57.8 173 27.2
CANSAT01G1968 Cannabis sativa HOM05D000003 ORTHO05D000004 7.0e-07 57.8 171 25.7
CANSAT35G0293 Cannabis sativa HOM05D000003 ORTHO05D000004 7.0e-07 57.8 90 41.1
CANSAT56G2371 Cannabis sativa HOM05D000003 ORTHO05D000004 7.0e-07 57.8 96 34.4
CANSAT80G0722 Cannabis sativa HOM05D000003 ORTHO05D000004 7.0e-07 57.8 94 38.3
RcHm_v2.0_Chr5g0032961 Rosa chinensis HOM05D000003 ORTHO05D000004 7.0e-07 57.8 94 30.9
Atru.chr6.65 Acer truncatum HOM05D000003 ORTHO05D000004 9.2e-07 57.4 94 33.0
CANSAT64G1939 Cannabis sativa HOM05D000003 ORTHO05D000004 9.2e-07 57.4 94 31.9
QL12p036057 Quercus lobata HOM05D001694 ORTHO05D000248 9.2e-07 57.4 100 33.0
TAR571G0006 Trochodendron aralioides HOM05D000003 ORTHO05D000004 9.2e-07 57.4 121 28.1
Aa31LG5G20940 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.2e-06 57.0 172 26.2
CANSAT54G1575 Cannabis sativa HOM05D000003 ORTHO05D000004 1.2e-06 57.0 90 38.9
PSO455G0112 Papaver somniferum HOM05D000003 ORTHO05D000004 1.2e-06 57.0 114 36.0
QL04p056296 Quercus lobata HOM05D000003 ORTHO05D000004 1.2e-06 57.0 173 27.2
QL08p004547 Quercus lobata HOM05D000003 ORTHO05D000004 1.2e-06 57.0 173 29.5
RcHm_v2.0_Chr1g0328181 Rosa chinensis HOM05D000003 ORTHO05D000004 1.2e-06 57.0 173 25.4
TPR.G7655 Trifolium pratense HOM05D000003 ORTHO05D000004 1.2e-06 57.0 173 24.9
Atru.chr1.2556 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-06 56.6 143 32.2
Atru.chr6.1288 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-06 56.6 173 26.6
CANSAT11G0143 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-06 56.6 96 32.3
CANSAT21G0798 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-06 56.6 90 36.7
CANSAT21G1036 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-06 56.6 171 25.7
CANSAT25G1969 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-06 56.6 171 26.9
CANSAT56G1952 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-06 56.6 107 33.6
CANSAT80G2601 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-06 56.6 171 26.3
FvH4_1g25610 Fragaria vesca HOM05D000003 ORTHO05D000004 1.6e-06 56.6 173 23.1
FvH4_5g06181 Fragaria vesca HOM05D000003 ORTHO05D000004 1.6e-06 56.6 171 24.0
Medtr7g066610 Medicago truncatula HOM05D000003 ORTHO05D000004 1.6e-06 56.6 124 33.1
QL02p097725 Quercus lobata HOM05D000003 ORTHO05D000004 1.6e-06 56.6 172 26.7
QL10p051120 Quercus lobata HOM05D000005 ORTHO05D000012 1.6e-06 56.6 94 34.0
Rhsim03G0079900 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.6e-06 56.6 171 24.6
Atru.chr5.3358 Acer truncatum HOM05D000003 ORTHO05D000004 2.0e-06 56.2 173 25.4
CANSAT25G0762 Cannabis sativa HOM05D000003 ORTHO05D000004 2.0e-06 56.2 94 38.3
CANSAT64G2575 Cannabis sativa HOM05D000003 ORTHO05D000004 2.0e-06 56.2 90 38.9
PSO782G1927 Papaver somniferum HOM05D000003 ORTHO05D000004 2.0e-06 56.2 138 29.0
QL02p000576 Quercus lobata HOM05D002132 ORTHO05D002168 2.0e-06 56.2 111 34.2
Atru.chr8.276 Acer truncatum HOM05D000003 ORTHO05D000004 2.7e-06 55.8 96 34.4
Atru.chr8.486 Acer truncatum HOM05D000003 ORTHO05D000004 2.7e-06 55.8 89 33.7
Atru.chr9.813 Acer truncatum HOM05D000003 ORTHO05D000004 2.7e-06 55.8 173 26.0
Aa31LG5G23430 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.7e-06 55.8 139 28.1
CANSAT25G2392 Cannabis sativa HOM05D000003 ORTHO05D000004 2.7e-06 55.8 94 34.0
CANSAT64G2289 Cannabis sativa HOM05D000003 ORTHO05D000004 2.7e-06 55.8 102 31.4
CANSAT64G2795 Cannabis sativa HOM05D000003 ORTHO05D000004 2.7e-06 55.8 90 40.0
PSO541G2256 Papaver somniferum HOM05D000003 ORTHO05D000004 2.7e-06 55.8 122 25.4
Rhsim01G0011800 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.7e-06 55.8 96 32.3
RcHm_v2.0_Chr1g0344541 Rosa chinensis HOM05D000003 ORTHO05D000004 2.7e-06 55.8 96 36.5
TAR536G0005 Trochodendron aralioides HOM05D000003 ORTHO05D000004 2.7e-06 55.8 73 41.1
TAR536G0011 Trochodendron aralioides HOM05D000003 ORTHO05D000004 2.7e-06 55.8 96 34.4
Atru.chr7.1974 Acer truncatum HOM05D000003 ORTHO05D000004 3.5e-06 55.5 173 26.6
Atru.ctg24.6 Acer truncatum HOM05D000003 ORTHO05D000004 3.5e-06 55.5 96 34.4
CANSAT11G1818 Cannabis sativa HOM05D000003 ORTHO05D000004 3.5e-06 55.5 161 24.2
CANSAT56G2881 Cannabis sativa HOM05D000003 ORTHO05D000004 3.5e-06 55.5 94 33.0
ECA233G5613 Erigeron canadensis HOM05D000003 ORTHO05D000004 3.5e-06 55.5 110 30.0
Hma1.2p1_0035F.1_g021825 Hydrangea macrophylla HOM05D000003 ORTHO05D000004 3.5e-06 55.5 170 26.5
Prupe.6G119000 Prunus persica HOM05D000003 ORTHO05D000004 3.5e-06 55.5 171 27.5
RcHm_v2.0_Chr3g0478201 Rosa chinensis HOM05D000003 ORTHO05D000004 3.5e-06 55.5 94 31.9
RcHm_v2.0_Chr3g0478611 Rosa chinensis HOM05D000003 ORTHO05D000004 3.5e-06 55.5 94 31.9
Atru.chr5.2535 Acer truncatum HOM05D000003 ORTHO05D000004 4.5e-06 55.1 70 44.3
CANSAT21G1904 Cannabis sativa HOM05D000003 ORTHO05D000004 4.5e-06 55.1 167 26.3
CANSAT35G0331 Cannabis sativa HOM05D000003 ORTHO05D000004 4.5e-06 55.1 94 30.9
CANSAT35G1919 Cannabis sativa HOM05D000003 ORTHO05D000004 4.5e-06 55.1 169 25.4
Atru.chr6.888 Acer truncatum HOM05D000003 ORTHO05D000004 5.9e-06 54.7 94 30.9
Atru.chr8.1381 Acer truncatum HOM05D000003 ORTHO05D000004 5.9e-06 54.7 91 36.3
Aa31LG11G5950 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.9e-06 54.7 171 25.1
Aa31sc178G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.9e-06 54.7 173 26.0
CANSAT25G0932 Cannabis sativa HOM05D000003 ORTHO05D000004 5.9e-06 54.7 167 26.3
Duzib116G0130 Durio zibethinus HOM05D000003 ORTHO05D000004 5.9e-06 54.7 95 30.5
QL05p068740 Quercus lobata HOM05D000003 ORTHO05D000004 5.9e-06 54.7 173 25.4
QL05p069113 Quercus lobata HOM05D000003 ORTHO05D000004 5.9e-06 54.7 173 25.4
TAR370G0008 Trochodendron aralioides HOM05D000003 ORTHO05D000004 5.9e-06 54.7 170 27.6
Aa31LG11G5340 Aethionema arabicum HOM05D000003 ORTHO05D000004 7.7e-06 54.3 172 25.6
CANSAT80G2259 Cannabis sativa HOM05D000003 ORTHO05D000004 7.7e-06 54.3 167 28.1
QL05p084194 Quercus lobata HOM05D000309 ORTHO05D000271 7.7e-06 54.3 96 33.3
TWI32G0681 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 7.7e-06 54.3 174 28.2
TWI53G0004 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 7.7e-06 54.3 174 28.2
TWI53G0186 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 7.7e-06 54.3 94 33.0


User provided reference genes

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