Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G079700 Manihot esculenta HOM05D005674 ORTHO05D007015 4.0e-39 166.8 83 100.0
Manes.08G068200 Manihot esculenta HOM05D005674 ORTHO05D007015 3.1e-28 130.6 82 80.5
CSS0001557 Camellia sinensis var. sinensis HOM05D005674 ORTHO05D007015 6.1e-24 116.3 81 71.6
Dinv12372 Davidia involucrata HOM05D005674 ORTHO05D007015 6.1e-24 116.3 78 74.4
CsaV3_4G030900 Cucumis sativus L. HOM05D005674 ORTHO05D007015 8.0e-24 115.9 78 70.5
Sc04g0009990 Simmondsia chinensis HOM05D005674 ORTHO05D007015 1.0e-23 115.5 80 68.8
Cfa012588 Carpinus fangiana HOM05D005674 ORTHO05D007015 1.4e-23 115.2 81 67.9
Lj1P677T28 Lonicera japonica HOM05D005674 ORTHO05D007015 1.4e-23 115.2 80 70.0
CiPaw.03G192600 Carya illinoinensis HOM05D005674 ORTHO05D007015 1.8e-23 114.8 81 67.9
ClCG07G002660 Citrullus lanatus HOM05D005674 ORTHO05D007015 8.9e-23 112.5 81 65.4
QL08p042254 Quercus lobata HOM05D005674 ORTHO05D007015 1.2e-22 112.1 81 67.9
GSVIVG01024415001 Vitis vinifera HOM05D005674 ORTHO05D007015 1.2e-22 112.1 79 69.6
Atru.chr7.2335 Acer truncatum HOM05D005674 ORTHO05D007015 2.0e-22 111.3 81 64.2
PGR142G3640 Punica granatum HOM05D005674 ORTHO05D007015 2.0e-22 111.3 82 68.3
Thecc.01G153300 Theobroma cacao HOM05D005674 ORTHO05D007015 2.6e-22 110.9 78 70.5
Duzib160G0406 Durio zibethinus HOM05D005674 ORTHO05D007015 3.4e-22 110.5 81 66.7
Hma1.2p1_0067F.1_g036940 Hydrangea macrophylla HOM05D005674 ORTHO05D007015 3.4e-22 110.5 81 64.2
Rhsim04G0075800 Rhododendron simsii HOM05D005674 ORTHO05D007015 4.4e-22 110.2 81 65.4
Sed0008626 Sechium edule HOM05D005674 ORTHO05D007015 5.7e-22 109.8 78 67.9
Sed0024338 Sechium edule HOM05D005674 ORTHO05D007015 5.7e-22 109.8 79 65.8
Gohir.D10G254800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 9.8e-22 109.0 81 65.4
Dinv11955 Davidia involucrata HOM05D005674 ORTHO05D007015 1.3e-21 108.6 73 72.6
Gorai.011G295800 Gossypium raimondii HOM05D005674 ORTHO05D007015 1.7e-21 108.2 81 64.2
Gorai.013G183800 Gossypium raimondii HOM05D005674 ORTHO05D007015 2.8e-21 107.5 80 65.0
DCAR_018956 Daucus carota HOM05D005674 ORTHO05D007015 4.9e-21 106.7 81 61.7
Actinidia00858 Actinidia chinensis HOM05D005674 ORTHO05D007015 6.3e-21 106.3 80 66.2
Ciclev10008244m.g Citrus clementina HOM05D005674 ORTHO05D007015 6.3e-21 106.3 81 60.5
Cpa.g.sc90.66 Carica papaya HOM05D005674 ORTHO05D007015 8.3e-21 105.9 80 61.2
Gohir.A10G242800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 8.3e-21 105.9 80 65.0
Gohir.D13G161800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 8.3e-21 105.9 79 65.8
PGSC0003DMG401020415 Solanum tuberosum HOM05D005674 ORTHO05D007015 8.3e-21 105.9 81 61.7
arahy.Tifrunner.gnm1.ann1.U482D3 Arachis hypogaea HOM05D005674 ORTHO05D007015 5.4e-20 103.2 81 58.0
Solyc07g055220.3 Solanum lycopersicum HOM05D005674 ORTHO05D007015 5.4e-20 103.2 80 60.0
Sopen07g027000 Solanum pennellii HOM05D005674 ORTHO05D007015 5.4e-20 103.2 80 60.0
arahy.Tifrunner.gnm1.ann1.MAGV51 Arachis hypogaea HOM05D005674 ORTHO05D007015 9.2e-20 102.4 81 56.8
MD07G1055100 Malus domestica HOM05D005674 ORTHO05D007015 9.2e-20 102.4 80 57.5
MD15G1427800 Malus domestica HOM05D005674 ORTHO05D007015 2.0e-19 101.3 80 56.2
Prupe.4G280300 Prunus persica HOM05D005674 ORTHO05D007015 2.7e-19 100.9 81 59.3
VMungo1309G1849 Vigna mungo HOM05D005674 ORTHO05D007015 3.5e-19 100.5 80 58.8
CAN.G1360.18 Capsicum annuum HOM05D005674 ORTHO05D007015 7.8e-19 99.4 80 58.8
Prupe.3G114500 Prunus persica HOM05D005674 ORTHO05D007015 1.0e-18 99.0 80 56.2
Gohir.A13G157000 Gossypium hirsutum HOM05D005674 ORTHO05D007015 1.3e-18 98.6 80 60.0
Lalb_Chr01g0007701 Lupinus albus HOM05D005674 ORTHO05D007015 1.3e-18 98.6 81 59.3
Psat0s443g0080 Pisum sativum HOM05D005674 ORTHO05D007015 2.3e-18 97.8 80 58.8
arahy.Tifrunner.gnm1.ann1.I145LQ Arachis hypogaea HOM05D005674 ORTHO05D007015 2.9e-18 97.4 75 60.0
Lsat_1_v5_gn_3_116841 Lactuca sativa HOM05D005674 ORTHO05D007015 2.9e-18 97.4 81 55.6
CANSAT54G2399 Cannabis sativa HOM05D005674 ORTHO05D007015 3.8e-18 97.1 76 63.2
TAR627G1060 Trochodendron aralioides HOM05D005674 ORTHO05D007015 5.0e-18 96.7 79 57.0
Medtr7g024140 Medicago truncatula HOM05D005674 ORTHO05D007015 6.6e-18 96.3 78 59.0
Ca_14577_v3 Cicer arietinum L. HOM05D005674 ORTHO05D007015 8.6e-18 95.9 80 57.5
Glyma.03G075500 Glycine max HOM05D005674 ORTHO05D007015 8.6e-18 95.9 79 59.5
Potri.006G006500 Populus trichocarpa HOM05D005674 ORTHO05D007015 1.1e-17 95.5 77 59.7
RcHm_v2.0_Chr2g0130841 Rosa chinensis HOM05D005674 ORTHO05D007015 1.1e-17 95.5 80 58.8
Sabra06G0005200 Salix brachista HOM05D005674 ORTHO05D007015 1.1e-17 95.5 77 61.0
arahy.Tifrunner.gnm1.ann1.JH6JIJ Arachis hypogaea HOM05D005674 ORTHO05D007015 1.5e-17 95.1 76 57.9
TWI31G0445 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 3.3e-17 94.0 80 57.5
AUR62040438 Chenopodium quinoa HOM05D005674 ORTHO05D007015 4.3e-17 93.6 71 62.0
FvH4_6g27690 Fragaria vesca HOM05D005674 ORTHO05D007015 4.3e-17 93.6 80 55.0
Solyc02g086230.2 Solanum lycopersicum HOM05D005674 ORTHO05D007015 7.3e-17 92.8 81 54.3
Sopen02g030910 Solanum pennellii HOM05D005674 ORTHO05D007015 7.3e-17 92.8 81 54.3
Hund00863 Selenicereus undatus HOM05D005674 ORTHO05D007015 9.5e-17 92.4 76 56.6
PGSC0003DMG400026386 Solanum tuberosum HOM05D005674 ORTHO05D007015 9.5e-17 92.4 81 53.1
ECA240G0139 Erigeron canadensis HOM05D005674 ORTHO05D007015 1.6e-16 91.7 79 54.4
MBI15_g37633_MAGBIO Magnolia biondii HOM05D000146 ORTHO05D000178 1.6e-16 91.7 77 57.1
BcaC06g33618 Brassica carinata HOM05D005674 ORTHO05D007015 2.8e-16 90.9 79 55.7
CAN.G625.40 Capsicum annuum HOM05D005674 ORTHO05D007015 2.8e-16 90.9 79 57.0
AUR62024049 Chenopodium quinoa HOM05D005674 ORTHO05D007015 2.8e-16 90.9 70 61.4
SGA_v2.0_scaffold18G08491 Striga asiatica HOM05D005674 ORTHO05D007015 3.6e-16 90.5 78 53.8
TWI12G0566 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 3.6e-16 90.5 81 56.8
CARHR224650 Cardamine hirsuta HOM05D005674 ORTHO05D007015 4.7e-16 90.1 76 57.9
CsaV3_5G005440 Cucumis sativus L. HOM05D005674 ORTHO05D007015 4.7e-16 90.1 77 58.4
Nitab4.5_0007923g0040 Nicotiana tabacum HOM05D005674 ORTHO05D007015 4.7e-16 90.1 81 55.6
Phvul.009G126100 Phaseolus vulgaris HOM05D005674 ORTHO05D007015 4.7e-16 90.1 80 55.0
Lj3g0025693 Lotus japonicus HOM05D005674 ORTHO05D007015 6.1e-16 89.7 78 53.8
BolC7t45434H Brassica oleracea HOM05D005674 ORTHO05D007015 1.0e-15 89.0 78 55.1
MELO3C033809.2 Cucumis melo HOM05D005674 ORTHO05D007015 1.0e-15 89.0 71 60.6
HanXRQChr13g0421081 Helianthus annuus HOM05D005674 ORTHO05D007015 1.0e-15 89.0 77 54.5
Nitab4.5_0000249g0090 Nicotiana tabacum HOM05D005674 ORTHO05D007015 1.0e-15 89.0 78 56.4
Migut.F00129 Erythranthe guttata HOM05D005674 ORTHO05D007015 1.4e-15 88.6 80 52.5
SalBow4G2062 Salvia bowleyana HOM05D005674 ORTHO05D007015 1.4e-15 88.6 81 53.1
Cc05_g08520 Coffea canephora HOM05D005674 ORTHO05D007015 1.8e-15 88.2 81 49.4
AL8G11670 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 3.0e-15 87.4 77 57.1
COL.COLO4_33609 Corchorus olitorius HOM05D005674 ORTHO05D007015 3.0e-15 87.4 78 57.7
Thhalv10025145m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 8.9e-15 85.9 79 50.6
Aa31LG10G3050 Aethionema arabicum HOM05D005674 ORTHO05D007015 1.5e-14 85.1 77 55.8
AT5G46680 Arabidopsis thaliana HOM05D005674 ORTHO05D007015 1.5e-14 85.1 77 54.5
CARHR174820 Cardamine hirsuta HOM05D005674 ORTHO05D007015 1.5e-14 85.1 77 57.1
A03p50860 Brassica napus HOM05D005674 ORTHO05D007015 2.6e-14 84.3 77 53.2
C07p49250 Brassica napus HOM05D005674 ORTHO05D007015 2.6e-14 84.3 74 55.4
BraA03t14173Z Brassica rapa HOM05D005674 ORTHO05D007015 2.6e-14 84.3 77 53.2
Sp7g16190 Schrenkiella parvula HOM05D005674 ORTHO05D007015 2.6e-14 84.3 73 56.2
TPR.G14745 Trifolium pratense HOM05D005674 ORTHO05D007015 2.6e-14 84.3 81 50.6
Sp2g11490 Schrenkiella parvula HOM05D005674 ORTHO05D007015 7.5e-14 82.8 77 54.5
Aa31LG6G670 Aethionema arabicum HOM05D005674 ORTHO05D007015 9.8e-14 82.4 76 53.9
AL7G36590 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 1.3e-13 82.0 69 58.0
Carub.0008s0124 Capsella rubella HOM05D005674 ORTHO05D007015 1.7e-13 81.6 77 51.9
HPP92_017208 Vanilla planifolia HOM05D005674 ORTHO05D007015 1.7e-13 81.6 64 57.8
THA.LOC104806715 Tarenaya hassleriana HOM05D005674 ORTHO05D007015 2.2e-13 81.3 76 48.7
TPR.G15161 Trifolium pratense HOM05D005674 ORTHO05D007015 2.2e-13 81.3 81 49.4
Carub.0007s2342 Capsella rubella HOM05D005674 ORTHO05D007015 2.9e-13 80.9 70 55.7
PSO063G6562 Papaver somniferum HOM05D005674 ORTHO05D007015 2.9e-13 80.9 78 50.0
PSO782G5737 Papaver somniferum HOM05D005674 ORTHO05D007015 2.9e-13 80.9 78 50.0
BraA02t08037Z Brassica rapa HOM05D005674 ORTHO05D007015 3.7e-13 80.5 77 54.5
A02p30210 Brassica napus HOM05D005674 ORTHO05D007015 6.4e-13 79.7 77 53.2
BcaC03g16871 Brassica carinata HOM05D005674 ORTHO05D007015 8.3e-13 79.3 77 53.2
Peaxi162Scf00888g00007 Petunia axillaris HOM05D005674 ORTHO05D007015 1.1e-12 79.0 78 52.6
Nn2g12528 Nelumbo nucifera HOM05D005674 ORTHO05D007015 1.4e-12 78.6 78 51.3
C02p47730 Brassica napus HOM05D005674 ORTHO05D007015 2.4e-12 77.8 77 51.9
BolC2t10809H Brassica oleracea HOM05D005674 ORTHO05D007015 2.4e-12 77.8 77 51.9
Nitab4.5_0000753g0050 Nicotiana tabacum HOM05D005674 ORTHO05D007015 5.4e-12 76.6 78 50.0
Eucgr.K01145 Eucalyptus grandis HOM05D005674 ORTHO05D007015 1.6e-11 75.1 50 74.0
TAR626G0412 Trochodendron aralioides HOM05D005674 ORTHO05D007015 2.7e-11 74.3 79 53.2
Os02g0793200 Oryza sativa ssp. japonica HOM05D005674 ORTHO05D007015 6.0e-11 73.2 75 45.3
Aqoxy3G02039 Aquilegia oxysepala HOM05D005674 ORTHO05D007015 7.8e-11 72.8 81 43.2
Duzib116G0841 Durio zibethinus HOM05D005674 ORTHO05D007015 1.0e-10 72.4 50 66.0
ATR1132G073 Amborella trichopoda HOM05D005674 ORTHO05D007015 2.3e-10 71.2 48 68.8
BcaC06g31458 Brassica carinata HOM05D005674 ORTHO05D007015 3.0e-10 70.9 80 47.5
CsaV3_5G013070 Cucumis sativus L. HOM05D005674 ORTHO05D007015 6.6e-10 69.7 51 64.7
CsaV3_UNG017130 Cucumis sativus L. HOM05D005674 ORTHO05D007015 6.6e-10 69.7 51 64.7
MELO3C020050.2 Cucumis melo HOM05D005674 ORTHO05D007015 1.1e-09 68.9 51 66.7
Nitab4.5_0007990g0010 Nicotiana tabacum HOM05D005674 ORTHO05D007015 1.1e-09 68.9 74 47.3
Thhalv10001221m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 1.5e-09 68.6 81 44.4
Zm00001eb201010 Zea mays HOM05D005674 ORTHO05D007015 1.9e-09 68.2 70 45.7
FAN23G2012 Fragaria x ananassa HOM05D005674 ORTHO05D007015 2.3e-07 61.2 41 68.3
CAN.G1034.39 Capsicum annuum HOM05D005674 ORTHO05D033540 5.2e-07 60.1 46 58.7
MELO3C033079.2 Cucumis melo HOM05D005674 ORTHO05D031076 5.2e-07 60.1 46 58.7
CAN.G1360.17 Capsicum annuum HOM05D001556 ORTHO05D001505 2.6e-06 57.8 40 57.5


User provided reference genes

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