Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 5.2e-96 354.4 178 100.0
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 4.9e-78 294.7 180 82.8
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 9.2e-77 290.4 178 82.6
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 1.6e-76 289.7 179 82.1
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 3.5e-76 288.5 178 82.0
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 6.0e-76 287.7 179 82.7
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 7.8e-76 287.3 174 82.2
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 1.0e-75 287.0 179 81.0
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 1.3e-75 286.6 179 82.1
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 1.7e-75 286.2 176 81.8
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 3.9e-75 285.0 179 80.4
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 5.1e-75 284.6 179 82.1
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 5.1e-75 284.6 172 83.1
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 6.6e-75 284.3 178 80.9
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 6.6e-75 284.3 178 81.5
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 8.6e-75 283.9 174 83.3
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 8.6e-75 283.9 180 79.4
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 1.1e-74 283.5 179 80.4
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 1.1e-74 283.5 179 78.8
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 2.5e-74 282.3 174 81.6
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 2.5e-74 282.3 179 80.4
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 4.3e-74 281.6 179 81.0
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 7.3e-74 280.8 179 77.7
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 2.8e-73 278.9 173 80.9
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 2.8e-73 278.9 179 79.3
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 2.8e-73 278.9 179 79.3
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 2.8e-73 278.9 173 82.7
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 6.2e-73 277.7 179 79.3
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 6.2e-73 277.7 179 81.0
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 8.1e-73 277.3 179 81.0
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 1.1e-72 276.9 178 78.1
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.1e-72 276.9 169 82.2
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 1.1e-72 276.9 178 78.7
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 1.1e-72 276.9 179 79.9
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 1.4e-72 276.6 179 78.2
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 1.8e-72 276.2 173 79.8
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 1.8e-72 276.2 180 78.9
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 1.8e-72 276.2 179 79.3
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 2.3e-72 275.8 173 81.5
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 2.3e-72 275.8 174 79.9
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 2.3e-72 275.8 179 79.3
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 3.1e-72 275.4 178 78.1
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 4.0e-72 275.0 179 79.3
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 4.0e-72 275.0 173 81.5
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 4.0e-72 275.0 179 76.0
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 6.8e-72 274.2 178 77.5
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 6.8e-72 274.2 179 77.7
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 8.9e-72 273.9 173 80.9
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 8.9e-72 273.9 180 79.4
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 1.2e-71 273.5 179 79.3
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 1.5e-71 273.1 179 76.5
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 2.0e-71 272.7 173 79.2
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 2.0e-71 272.7 179 77.1
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 2.0e-71 272.7 179 78.8
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 2.6e-71 272.3 169 80.5
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 2.6e-71 272.3 207 70.5
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 5.8e-71 271.2 179 77.1
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 7.6e-71 270.8 180 75.6
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 1.7e-70 269.6 178 77.0
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 1.7e-70 269.6 179 78.8
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 1.7e-70 269.6 179 77.1
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.7e-70 269.6 179 77.7
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.7e-70 269.6 179 77.7
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.7e-70 269.6 179 77.1
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 2.2e-70 269.2 179 78.2
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 2.2e-70 269.2 179 77.1
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 3.8e-70 268.5 176 77.3
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 4.9e-70 268.1 168 78.6
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 4.9e-70 268.1 179 76.0
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 8.4e-70 267.3 171 78.4
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.4e-69 266.5 179 76.0
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 1.4e-69 266.5 179 76.0
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.9e-69 266.2 179 76.0
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 2.4e-69 265.8 179 75.4
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 2.4e-69 265.8 179 76.0
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.2e-69 265.4 179 76.0
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.2e-69 265.4 179 76.5
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 4.1e-69 265.0 176 79.0
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 5.4e-69 264.6 172 78.5
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 5.4e-69 264.6 179 75.4
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 7.1e-69 264.2 183 73.8
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 9.2e-69 263.8 179 75.4
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 1.2e-68 263.5 174 74.1
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 1.6e-68 263.1 178 73.0
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 1.6e-68 263.1 170 78.2
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 2.1e-68 262.7 178 75.8
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 2.1e-68 262.7 177 76.3
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 2.7e-68 262.3 177 73.4
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 3.5e-68 261.9 171 77.8
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 1.3e-67 260.0 168 78.0
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 1.7e-67 259.6 173 72.8
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 1.7e-67 259.6 171 76.6
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 2.3e-67 259.2 173 72.3
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 3.0e-67 258.8 173 72.8
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 3.9e-67 258.5 179 75.4
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 5.1e-67 258.1 173 71.7
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 5.1e-67 258.1 177 72.3
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 6.6e-67 257.7 171 77.2
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 8.6e-67 257.3 178 73.0
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 8.6e-67 257.3 177 72.9
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 1.1e-66 256.9 169 75.7
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 1.5e-66 256.5 173 71.7
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 2.5e-66 255.8 169 75.7
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 4.3e-66 255.0 177 72.9
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 5.6e-66 254.6 178 72.5
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 7.3e-66 254.2 221 63.8
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 2.1e-65 252.7 160 78.1
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 3.6e-65 251.9 178 71.3
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 8.1e-65 250.8 174 71.8
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 1.4e-64 250.0 180 72.2
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 5.2e-64 248.1 175 71.4
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 6.9e-64 247.7 179 70.4
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 1.5e-63 246.5 157 81.5
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 5.8e-63 244.6 176 69.3
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 1.7e-62 243.0 176 68.8
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 1.7e-62 243.0 178 71.9
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 2.2e-62 242.7 169 71.0
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 8.4e-62 240.7 211 63.5
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 8.4e-62 240.7 165 75.2
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 1.9e-61 239.6 171 72.5
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 4.6e-60 235.0 150 80.0
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 4.6e-60 235.0 172 72.7
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 1.3e-59 233.4 150 79.3
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 1.7e-59 233.0 173 68.8
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 1.6e-57 226.5 178 68.5
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 6.2e-57 224.6 147 77.6
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 9.0e-56 220.7 172 68.0
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 4.0e-48 195.3 120 84.2
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 5.8e-47 191.4 170 63.5
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 7.6e-47 191.0 169 63.9
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 1.7e-46 189.9 162 58.0
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 2.4e-45 186.0 114 82.5
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 4.2e-45 185.3 114 85.1
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 1.6e-44 183.3 167 54.5
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 2.1e-44 183.0 162 56.2
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 2.7e-44 182.6 177 53.1
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 1.5e-42 176.8 115 77.4
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 3.7e-41 172.2 165 54.5
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 9.3e-37 157.5 155 58.1
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 7.9e-36 154.5 160 51.9
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.3e-35 153.7 188 52.1
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 5.1e-35 151.8 104 76.0
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 1.5e-34 150.2 222 42.8
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 1.6e-33 146.7 86 83.7
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 2.8e-33 146.0 170 49.4
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 5.3e-32 141.7 163 48.5
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 5.9e-31 138.3 83 80.7
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 7.6e-31 137.9 83 80.7
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 2.2e-30 136.3 138 54.3
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.4e-29 133.7 98 71.4
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.8e-27 126.7 93 69.9
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 5.1e-27 125.2 94 67.0
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 2.5e-26 122.9 86 70.9
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 4.3e-26 122.1 117 59.0
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 2.0e-23 113.2 97 61.9
QL07p009462 Quercus lobata HOM05D004389 ORTHO05D005457 1.7e-22 110.2 75 74.7
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 2.7e-20 102.8 82 64.6
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 2.3e-19 99.8 138 48.6
vmacro15154 Vaccinium macrocarpon HOM05D004389 ORTHO05D022937 1.1e-13 80.9 52 76.9
SHI18161 Sapria himalayana HOM05D004389 ORTHO05D005457 4.2e-13 79.0 50 74.0
Cfa025624 Carpinus fangiana HOM05D004389 ORTHO05D125512 7.2e-13 78.2 217 33.6
vmacro17239 Vaccinium macrocarpon HOM05D040504 ORTHO05D426804 1.5e-10 70.5 160 35.6
Medtr6g452950 Medicago truncatula HOM05D029366 ORTHO05D022937 3.7e-09 65.9 42 71.4
QL07p009230 Quercus lobata HOM05D004389 ORTHO05D005457 3.7e-09 65.9 85 48.2
HPP92_010328 Vanilla planifolia HOM05D004389 ORTHO05D022937 2.4e-08 63.2 42 64.3


User provided reference genes

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