Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G077774 Manihot esculenta HOM05D000029 ORTHO05D026227 1.4e-24 116.3 106 100.0
Manes.07G024200 Manihot esculenta HOM05D000029 ORTHO05D000854 4.4e-18 94.7 69 84.1
TWI23G0746 Tripterygium wilfordii HOM05D000029 ORTHO05D000854 1.2e-15 86.7 72 59.7
CiPaw.05G004500 Carya illinoinensis HOM05D000029 ORTHO05D000854 3.5e-15 85.1 71 62.0
Haze_10042 Corylus avellana HOM05D000029 ORTHO05D000854 3.0e-14 82.0 72 58.3
CiPaw.06G173800 Carya illinoinensis HOM05D000029 ORTHO05D000854 8.6e-14 80.5 72 77.8
Atru.chr6.505 Acer truncatum HOM05D000029 ORTHO05D000854 1.5e-13 79.7 70 62.9
Potri.004G223900 Populus trichocarpa HOM05D000029 ORTHO05D000854 2.5e-13 79.0 72 54.2
Dinv19416 Davidia involucrata HOM05D000029 ORTHO05D000854 5.6e-13 77.8 106 42.5
Manes.10G118400 Manihot esculenta HOM05D000029 ORTHO05D000854 3.6e-12 75.1 64 60.9
Gohir.A03G215400 Gossypium hirsutum HOM05D000029 ORTHO05D000854 4.7e-12 74.7 72 52.8
Dinv07486 Davidia involucrata HOM05D000029 ORTHO05D026227 1.8e-11 72.8 69 53.6
COL.COLO4_17721 Corchorus olitorius HOM05D000029 ORTHO05D000854 3.1e-11 72.0 63 57.1
Sabra01G0169600 Salix brachista HOM05D000029 ORTHO05D000854 3.1e-11 72.0 72 48.6
Ciclev10000148m.g Citrus clementina HOM05D000029 ORTHO05D000854 4.0e-11 71.6 63 58.7
Gohir.A12G044000 Gossypium hirsutum HOM05D000029 ORTHO05D000854 4.0e-11 71.6 60 58.3
Medtr2g005810 Medicago truncatula HOM05D000029 ORTHO05D000854 6.8e-11 70.9 72 50.0
Sed0027631 Sechium edule HOM05D000029 ORTHO05D000854 8.9e-11 70.5 72 48.6
RcHm_v2.0_Chr7g0220681 Rosa chinensis HOM05D000029 ORTHO05D000854 1.2e-10 70.1 72 51.4
GSVIVG01023246001 Vitis vinifera HOM05D000029 ORTHO05D000854 1.5e-10 69.7 68 48.5
Actinidia39000 Actinidia chinensis HOM05D000029 ORTHO05D000854 2.0e-10 69.3 70 51.4
Aqoxy6G00086_Aqoxy6G00087 Aquilegia oxysepala HOM05D000029 ORTHO05D000854 2.0e-10 69.3 105 37.1
Gohir.D01G174900 Gossypium hirsutum HOM05D000029 ORTHO05D000854 3.4e-10 68.6 61 54.1
Gorai.002G217000 Gossypium raimondii HOM05D000029 ORTHO05D000854 3.4e-10 68.6 61 54.1
MD15G1435600 Malus domestica HOM05D000029 ORTHO05D000854 7.6e-10 67.4 68 52.9
PGR142G4398 Punica granatum HOM05D000029 ORTHO05D000854 7.6e-10 67.4 68 52.9
Duzib248G1143 Durio zibethinus HOM05D000029 ORTHO05D000854 9.9e-10 67.0 63 55.6
FAN04G0005 Fragaria x ananassa HOM05D000029 ORTHO05D000854 9.9e-10 67.0 105 49.5
Rhsim11G0122500 Rhododendron simsii HOM05D000029 ORTHO05D000854 1.7e-09 66.2 72 51.4
CANSAT54G1241 Cannabis sativa HOM05D000029 ORTHO05D000854 2.9e-09 65.5 74 66.2
Duzib132G1157 Durio zibethinus HOM05D000029 ORTHO05D000854 4.9e-09 64.7 61 54.1
Haze_20642 Corylus avellana HOM05D000029 ORTHO05D000854 6.4e-09 64.3 69 62.3
Sed0003095 Sechium edule HOM05D000029 ORTHO05D000854 6.4e-09 64.3 70 45.7
FAN08G0604 Fragaria x ananassa HOM05D000029 ORTHO05D000854 1.1e-08 63.5 68 50.0
Nn5g27442 Nelumbo nucifera HOM05D000029 ORTHO05D000854 1.1e-08 63.5 61 54.1
FvH4_5g28640 Fragaria vesca HOM05D000029 ORTHO05D000854 1.9e-08 62.8 67 49.3
FAN13G3032 Fragaria x ananassa HOM05D000029 ORTHO05D026227 1.9e-08 62.8 67 49.3
FAN18G2334 Fragaria x ananassa HOM05D000029 ORTHO05D000854 1.9e-08 62.8 67 49.3
Gohir.D02G236900 Gossypium hirsutum HOM05D000029 ORTHO05D000854 1.9e-08 62.8 63 50.8
Gohir.D12G043200 Gossypium hirsutum HOM05D000029 ORTHO05D000854 1.9e-08 62.8 60 53.3
Gorai.005G265400 Gossypium raimondii HOM05D000029 ORTHO05D000854 1.9e-08 62.8 63 50.8
Gorai.008G045400 Gossypium raimondii HOM05D000029 ORTHO05D000854 1.9e-08 62.8 60 53.3
MD08G1241900 Malus domestica HOM05D000029 ORTHO05D000854 1.9e-08 62.8 67 52.2
FAN13G0360 Fragaria x ananassa HOM05D000029 ORTHO05D000854 2.4e-08 62.4 105 37.1
Psat1g222480 Pisum sativum HOM05D000029 ORTHO05D000854 2.4e-08 62.4 64 70.3
Cc02_g23200 Coffea canephora HOM05D000029 ORTHO05D000854 4.1e-08 61.6 70 45.7
Lalb_Chr20g0123711 Lupinus albus HOM05D000029 ORTHO05D000854 5.4e-08 61.2 64 59.4
CsaV3_3G006380 Cucumis sativus L. HOM05D000029 ORTHO05D000854 7.1e-08 60.8 68 45.6
Hma1.2p1_0633F.1_g192660 Hydrangea macrophylla HOM05D000029 ORTHO05D000854 7.1e-08 60.8 64 46.9
QL02p100637 Quercus lobata HOM05D000029 ORTHO05D000854 7.1e-08 60.8 63 52.4
Hund15455 Selenicereus undatus HOM05D000029 ORTHO05D000854 7.1e-08 60.8 73 45.2
Sc07g0005060 Simmondsia chinensis HOM05D000029 ORTHO05D000854 7.1e-08 60.8 67 67.2
Prupe.1G579200 Prunus persica HOM05D000029 ORTHO05D000854 9.2e-08 60.5 63 52.4
MELO3C016502.2 Cucumis melo HOM05D000029 ORTHO05D000854 1.2e-07 60.1 68 45.6
Migut.B00768 Erythranthe guttata HOM05D000029 ORTHO05D000854 2.1e-07 59.3 70 41.4
Oeu000134.1 Olea europaea HOM05D000029 ORTHO05D000854 2.7e-07 58.9 65 47.7
TAR628G0459 Trochodendron aralioides HOM05D000029 ORTHO05D000854 3.5e-07 58.5 60 51.7
Eucgr.G00319 Eucalyptus grandis HOM05D000029 ORTHO05D000854 4.6e-07 58.2 63 49.2
CSS0003406 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D000854 6.0e-07 57.8 61 47.5
ClCG10G007070 Citrullus lanatus HOM05D000029 ORTHO05D000854 6.0e-07 57.8 68 44.1
CDE02G4774 Ceratophyllum demersum HOM05D000029 ORTHO05D000854 1.0e-06 57.0 72 45.8
vmacro01710 Vaccinium macrocarpon HOM05D000029 ORTHO05D000854 1.0e-06 57.0 65 46.2
SGA_v2.0_scaffold100G29536 Striga asiatica HOM05D000029 ORTHO05D000854 1.3e-06 56.6 72 37.5
THA.LOC104799822 Tarenaya hassleriana HOM05D000029 ORTHO05D000854 1.3e-06 56.6 107 44.9
SalBow3G0860 Salvia bowleyana HOM05D000029 ORTHO05D000854 2.3e-06 55.8 61 45.9
Lj6g0026006 Lotus japonicus HOM05D000029 ORTHO05D000854 3.0e-06 55.5 61 45.9
Lj9C298G7 Lonicera japonica HOM05D000029 ORTHO05D000854 3.9e-06 55.1 63 42.9
arahy.Tifrunner.gnm1.ann1.3GIK5E Arachis hypogaea HOM05D000029 ORTHO05D000854 5.1e-06 54.7 63 66.7
CSS0026314 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D000854 5.1e-06 54.7 66 45.5
PGSC0003DMG400024890 Solanum tuberosum HOM05D000029 ORTHO05D000854 5.1e-06 54.7 63 42.9
arahy.Tifrunner.gnm1.ann1.IA1MHA Arachis hypogaea HOM05D000029 ORTHO05D000854 6.6e-06 54.3 63 58.7
Solyc01g103530.3 Solanum lycopersicum HOM05D000029 ORTHO05D000854 6.6e-06 54.3 63 42.9
Sopen01g045880 Solanum pennellii HOM05D000029 ORTHO05D000854 6.6e-06 54.3 63 42.9
Nitab4.5_0008934g0010 Nicotiana tabacum HOM05D000029 ORTHO05D000854 8.6e-06 53.9 63 42.9


User provided reference genes

Program Settings