Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G077227 Manihot esculenta HOM05D000236 ORTHO05D249995 2.1e-64 248.8 123 100.0
Manes.01G062000 Manihot esculenta HOM05D000236 ORTHO05D000192 1.3e-37 159.8 80 97.5
Manes.02G022500 Manihot esculenta HOM05D000236 ORTHO05D000192 6.5e-29 131.0 80 77.5
Sabra03G0089500 Salix brachista HOM05D000236 ORTHO05D000192 1.5e-25 119.8 80 71.2
Potri.003G126500 Populus trichocarpa HOM05D000236 ORTHO05D000192 1.9e-25 119.4 80 71.2
Potri.001G104900 Populus trichocarpa HOM05D000236 ORTHO05D000192 5.3e-23 111.3 80 68.8
Sabra01G0079600 Salix brachista HOM05D000236 ORTHO05D000192 5.0e-21 104.8 80 63.8
Cfa012171 Carpinus fangiana HOM05D000236 ORTHO05D000192 3.2e-20 102.1 80 66.2
QL12p033521 Quercus lobata HOM05D000236 ORTHO05D000192 3.2e-20 102.1 80 65.0
QL12p034212 Quercus lobata HOM05D000236 ORTHO05D000192 3.2e-20 102.1 80 65.0
Haze_08852 Corylus avellana HOM05D000236 ORTHO05D000192 4.6e-19 98.2 80 63.8
TWI81G1003 Tripterygium wilfordii HOM05D000236 ORTHO05D000192 2.5e-17 92.4 81 61.7
CiPaw.11G136200 Carya illinoinensis HOM05D000236 ORTHO05D000192 1.3e-16 90.1 77 59.7
CiPaw.12G093900 Carya illinoinensis HOM05D000236 ORTHO05D000192 1.7e-16 89.7 80 61.2
Eucgr.D01853 Eucalyptus grandis HOM05D000236 ORTHO05D000192 2.8e-16 89.0 81 59.3
TWI15G0132 Tripterygium wilfordii HOM05D000236 ORTHO05D000192 3.7e-16 88.6 77 64.9
Cpa.g.sc74.23 Carica papaya HOM05D000236 ORTHO05D000192 3.1e-15 85.5 80 57.5
CANSAT21G1348 Cannabis sativa HOM05D000236 ORTHO05D000192 6.9e-15 84.3 80 61.2
ClCG01G002800 Citrullus lanatus HOM05D000236 ORTHO05D000192 1.5e-14 83.2 81 48.1
MELO3C005668.2 Cucumis melo HOM05D000236 ORTHO05D000192 1.5e-14 83.2 81 48.1
CsaV3_5G002880 Cucumis sativus L. HOM05D000236 ORTHO05D000192 1.5e-14 83.2 81 48.1
Prupe.5G098800 Prunus persica HOM05D000236 ORTHO05D000192 2.0e-14 82.8 83 57.8
Hma1.2p1_1788F.1_g302430 Hydrangea macrophylla HOM05D000236 ORTHO05D000192 2.6e-14 82.4 80 55.0
FvH4_5g02200 Fragaria vesca HOM05D000236 ORTHO05D000192 3.4e-14 82.0 81 55.6
FAN08G1301 Fragaria x ananassa HOM05D000236 ORTHO05D000192 5.9e-14 81.3 81 55.6
FAN13G2168 Fragaria x ananassa HOM05D000236 ORTHO05D000192 5.9e-14 81.3 81 55.6
Dinv37648 Davidia involucrata HOM05D000236 ORTHO05D000192 1.7e-13 79.7 80 55.0
CSS0003563 Camellia sinensis var. sinensis HOM05D000236 ORTHO05D000192 2.2e-13 79.3 82 52.4
Thecc.03G277600 Theobroma cacao HOM05D000236 ORTHO05D000192 2.2e-13 79.3 82 53.7
Duzib068G0245 Durio zibethinus HOM05D000236 ORTHO05D000192 3.8e-13 78.6 82 53.7
FAN18G4588 Fragaria x ananassa HOM05D000236 ORTHO05D000192 5.0e-13 78.2 81 54.3
Gohir.A08G182100 Gossypium hirsutum HOM05D000236 ORTHO05D000192 5.0e-13 78.2 84 56.0
Gohir.D08G200700 Gossypium hirsutum HOM05D000236 ORTHO05D000192 5.0e-13 78.2 84 56.0
Gorai.004G211500 Gossypium raimondii HOM05D000236 ORTHO05D000192 5.0e-13 78.2 84 56.0
CSS0046199 Camellia sinensis var. sinensis HOM05D000236 ORTHO05D000192 8.5e-13 77.4 82 51.2
RcHm_v2.0_Chr7g0197931 Rosa chinensis HOM05D000236 ORTHO05D000192 1.4e-12 76.6 82 54.9
Sed0015615 Sechium edule HOM05D000236 ORTHO05D000192 1.4e-12 76.6 82 46.3
Actinidia27385 Actinidia chinensis HOM05D000236 ORTHO05D000192 1.9e-12 76.3 82 52.4
Duzib084G1115 Durio zibethinus HOM05D000236 ORTHO05D000192 2.5e-12 75.9 83 50.6
MD06G1081700 Malus domestica HOM05D000236 ORTHO05D000192 1.6e-11 73.2 80 52.5
Nn1g01491 Nelumbo nucifera HOM05D000236 ORTHO05D000192 1.6e-11 73.2 80 50.0
TAR636G1270 Trochodendron aralioides HOM05D000236 ORTHO05D000192 1.6e-11 73.2 80 51.2
Medtr8g098390 Medicago truncatula HOM05D000236 ORTHO05D000192 2.7e-11 72.4 87 51.7
Glyma.05G207300 Glycine max HOM05D000236 ORTHO05D000192 4.7e-11 71.6 90 51.1
CSS0007853 Camellia sinensis var. sinensis HOM05D000236 ORTHO05D000192 6.1e-11 71.2 81 49.4
Sed0021731 Sechium edule HOM05D000236 ORTHO05D000192 6.1e-11 71.2 81 43.2
Gohir.D12G230500 Gossypium hirsutum HOM05D000236 ORTHO05D000192 7.9e-11 70.9 82 48.8
Gorai.008G246700 Gossypium raimondii HOM05D000236 ORTHO05D000192 7.9e-11 70.9 82 48.8
MSTRG.1871 Avicennia marina HOM05D000236 ORTHO05D000192 1.4e-10 70.1 97 43.3
Dinv38950 Davidia involucrata HOM05D000236 ORTHO05D000192 1.4e-10 70.1 80 50.0
Psat7g032520 Pisum sativum HOM05D000236 ORTHO05D000192 1.4e-10 70.1 85 50.6
CSS0039311 Camellia sinensis var. sinensis HOM05D000236 ORTHO05D000192 2.3e-10 69.3 81 48.1
Nn6g33474 Nelumbo nucifera HOM05D000236 ORTHO05D000192 5.1e-10 68.2 80 50.0
Gohir.A12G228000 Gossypium hirsutum HOM05D000236 ORTHO05D000192 6.7e-10 67.8 82 47.6
vmacro11320 Vaccinium macrocarpon HOM05D000236 ORTHO05D000192 6.7e-10 67.8 82 48.8
VMungo0251G3179 Vigna mungo HOM05D000236 ORTHO05D000192 8.8e-10 67.4 91 49.5
Ca_17539_v3 Cicer arietinum L. HOM05D000236 ORTHO05D000192 1.1e-09 67.0 87 52.9
Lj4g0005438 Lotus japonicus HOM05D000236 ORTHO05D000192 1.1e-09 67.0 88 54.5
Aqoxy7G00345 Aquilegia oxysepala HOM05D000236 ORTHO05D000192 1.5e-09 66.6 79 46.8
Glyma.11G023900 Glycine max HOM05D000236 ORTHO05D000192 2.0e-09 66.2 87 50.6
Atru.chr5.470 Acer truncatum HOM05D000236 ORTHO05D000192 3.3e-09 65.5 80 50.0
EL10Ac5g13080 Beta vulgaris HOM05D000236 ORTHO05D000192 3.3e-09 65.5 81 50.6
COL.COLO4_34452 Corchorus olitorius HOM05D000236 ORTHO05D000192 3.3e-09 65.5 78 51.3
Glyma.08G014000 Glycine max HOM05D000236 ORTHO05D000192 5.7e-09 64.7 90 47.8
Thecc.01G361000 Theobroma cacao HOM05D000236 ORTHO05D000192 5.7e-09 64.7 80 47.5
Nitab4.5_0000580g0280 Nicotiana tabacum HOM05D000236 ORTHO05D000192 7.4e-09 64.3 90 44.4
TPR.G6681 Trifolium pratense HOM05D000236 ORTHO05D000192 9.7e-09 63.9 77 46.8
Ah.12g057060 Amaranthus hybridus HOM05D000236 ORTHO05D000192 1.3e-08 63.5 83 50.6
Dinv32466 Davidia involucrata HOM05D000236 ORTHO05D000192 1.3e-08 63.5 82 47.6
Ca_24554_v3 Cicer arietinum L. HOM05D000236 ORTHO05D000192 1.7e-08 63.2 79 50.6
MD01G1056200 Malus domestica HOM05D000236 ORTHO05D000192 2.2e-08 62.8 80 47.5
Ciclev10020988m.g Citrus clementina HOM05D000236 ORTHO05D000192 6.3e-08 61.2 80 43.8
CAN.G792.80 Capsicum annuum HOM05D000236 ORTHO05D000192 1.1e-07 60.5 89 42.7
Glyma.01G219600 Glycine max HOM05D000236 ORTHO05D000192 1.1e-07 60.5 95 45.3
MD07G1139600 Malus domestica HOM05D000236 ORTHO05D000192 1.1e-07 60.5 80 48.8
Rhsim02G0228500 Rhododendron simsii HOM05D000236 ORTHO05D000192 1.1e-07 60.5 83 44.6
CANSAT56G2807 Cannabis sativa HOM05D000236 ORTHO05D000192 1.4e-07 60.1 80 42.5
Gohir.A11G088000 Gossypium hirsutum HOM05D000236 ORTHO05D000192 1.4e-07 60.1 80 43.8
Gohir.D11G092300 Gossypium hirsutum HOM05D000236 ORTHO05D000192 1.4e-07 60.1 80 43.8
Gorai.007G098600 Gossypium raimondii HOM05D000236 ORTHO05D000192 1.4e-07 60.1 80 43.8
MBI17_g28344_MAGBIO Magnolia biondii HOM05D000236 ORTHO05D000192 1.4e-07 60.1 82 48.8
Phvul.002G288900 Phaseolus vulgaris HOM05D000236 ORTHO05D000192 1.4e-07 60.1 83 48.2
TAR375G0962 Trochodendron aralioides HOM05D000236 ORTHO05D000192 1.4e-07 60.1 74 48.6
Atru.chr9.2238 Acer truncatum HOM05D000236 ORTHO05D000192 1.8e-07 59.7 83 39.8
Atru.chr9.2248 Acer truncatum HOM05D000236 ORTHO05D000192 1.8e-07 59.7 83 39.8
Cpa.g.sc18.240 Carica papaya HOM05D000236 ORTHO05D000192 2.4e-07 59.3 80 45.0
Lalb_Chr16g0389941 Lupinus albus HOM05D000236 ORTHO05D000192 2.4e-07 59.3 86 48.8
Ah.02g116620 Amaranthus hybridus HOM05D000236 ORTHO05D000192 3.1e-07 58.9 82 51.2
Hund11477 Selenicereus undatus HOM05D000236 ORTHO05D000192 3.1e-07 58.9 82 46.3
Solyc08g008030.3 Solanum lycopersicum HOM05D000236 ORTHO05D000192 3.1e-07 58.9 86 44.2
arahy.Tifrunner.gnm1.ann1.WKC89F Arachis hypogaea HOM05D000236 ORTHO05D000192 4.1e-07 58.5 93 43.0
Nitab4.5_0003441g0030 Nicotiana tabacum HOM05D000236 ORTHO05D000192 5.3e-07 58.2 90 40.0
SGA_v2.0_scaffold253G45137 Striga asiatica HOM05D000236 ORTHO05D000192 5.3e-07 58.2 95 43.2
SGA_v2.0_scaffold96G28952 Striga asiatica HOM05D000236 ORTHO05D000192 5.3e-07 58.2 101 42.6
Aa31LG2G800 Aethionema arabicum HOM05D000236 ORTHO05D000192 7.0e-07 57.8 81 39.5
Sopen08g003910 Solanum pennellii HOM05D000236 ORTHO05D000192 7.0e-07 57.8 86 44.2
COL.COLO4_12694 Corchorus olitorius HOM05D000236 ORTHO05D000192 1.2e-06 57.0 80 45.0
Oeu031504.1 Olea europaea HOM05D000236 ORTHO05D000192 1.2e-06 57.0 95 40.0
QL08p049076 Quercus lobata HOM05D000236 ORTHO05D000192 1.5e-06 56.6 80 41.2
THA.LOC104818049 Tarenaya hassleriana HOM05D000236 ORTHO05D000192 1.5e-06 56.6 82 45.1
Duzib138G1566 Durio zibethinus HOM05D000236 ORTHO05D000192 2.0e-06 56.2 80 42.5
Lalb_Chr05g0211821 Lupinus albus HOM05D000236 ORTHO05D000192 2.0e-06 56.2 81 44.4
Manes.01G258800 Manihot esculenta HOM05D000236 ORTHO05D000192 2.0e-06 56.2 80 42.5
CSS0011876 Camellia sinensis var. sinensis HOM05D000236 ORTHO05D000192 2.6e-06 55.8 79 48.1
Prupe.2G167000 Prunus persica HOM05D000236 ORTHO05D000192 2.6e-06 55.8 80 45.0
Hund11476 Selenicereus undatus HOM05D000236 ORTHO05D000192 3.4e-06 55.5 81 45.7
FAN06G1469 Fragaria x ananassa HOM05D000236 ORTHO05D000192 4.5e-06 55.1 80 45.0
FAN10G2718 Fragaria x ananassa HOM05D000236 ORTHO05D000192 4.5e-06 55.1 80 43.8
LjContig00312_ERROPOS870357g0002920 Lotus japonicus HOM05D000236 ORTHO05D000192 4.5e-06 55.1 83 48.2
Migut.E01099 Erythranthe guttata HOM05D000236 ORTHO05D000192 7.7e-06 54.3 101 36.6
FvH4_7g13980 Fragaria vesca HOM05D000236 ORTHO05D000192 7.7e-06 54.3 80 43.8
FAN06G1927 Fragaria x ananassa HOM05D000236 ORTHO05D000192 7.7e-06 54.3 80 43.8


User provided reference genes

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