Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G075018 Manihot esculenta HOM05D007170 ORTHO05D009243 0.0e+00 2943.3 1504 100.0
Potri.006G023500 Populus trichocarpa HOM05D007170 ORTHO05D009243 0.0e+00 1946.8 1529 67.8
Sabra06G0017000 Salix brachista HOM05D007170 ORTHO05D009243 0.0e+00 1937.5 1529 67.6
Cfa020492 Carpinus fangiana HOM05D007170 ORTHO05D009243 0.0e+00 1833.5 1520 64.6
Atru.chr8.950 Acer truncatum HOM05D007170 ORTHO05D009243 0.0e+00 1792.3 1519 64.1
Haze_09546 Corylus avellana HOM05D007170 ORTHO05D009243 0.0e+00 1774.6 1512 63.6
Prupe.3G191100 Prunus persica HOM05D007170 ORTHO05D009243 0.0e+00 1773.1 1497 62.3
RcHm_v2.0_Chr2g0154431 Rosa chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1747.3 1458 62.9
Duzib138G0290 Durio zibethinus HOM05D007170 ORTHO05D009243 0.0e+00 1746.9 1523 62.4
TAR626G1158 Trochodendron aralioides HOM05D007170 ORTHO05D009243 0.0e+00 1736.5 1530 61.2
GSVIVG01020797001 Vitis vinifera HOM05D007170 ORTHO05D009243 0.0e+00 1725.3 1532 60.6
CANSAT64G1590 Cannabis sativa HOM05D007170 ORTHO05D009243 0.0e+00 1720.7 1522 61.2
MD09G1135500 Malus domestica HOM05D007170 ORTHO05D009243 0.0e+00 1715.7 1525 60.2
FvH4_6g39900 Fragaria vesca HOM05D007170 ORTHO05D009243 0.0e+00 1712.2 1433 62.1
CiPaw.03G198500 Carya illinoinensis HOM05D007170 ORTHO05D009243 0.0e+00 1700.6 1460 62.1
Actinidia06806 Actinidia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1694.5 1523 60.1
Gohir.D07G192100 Gossypium hirsutum HOM05D007170 ORTHO05D009243 0.0e+00 1688.7 1495 60.9
Gorai.001G214900 Gossypium raimondii HOM05D007170 ORTHO05D009243 0.0e+00 1680.6 1495 60.9
FAN14G4936 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 1680.2 1506 59.6
FAN02G4004 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 1679.8 1516 59.5
Ciclev10010909m.g Citrus clementina HOM05D007170 ORTHO05D009243 0.0e+00 1669.4 1428 63.4
Nn3g20634 Nelumbo nucifera HOM05D007170 ORTHO05D009243 0.0e+00 1647.1 1495 59.6
Thecc.01G177100 Theobroma cacao HOM05D007170 ORTHO05D009243 0.0e+00 1637.1 1379 63.2
PGR031G3275 Punica granatum HOM05D007170 ORTHO05D009243 0.0e+00 1584.3 1524 57.4
Eucgr.A00891 Eucalyptus grandis HOM05D007170 ORTHO05D009243 0.0e+00 1550.0 1531 55.5
MBI02_g15149_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 0.0e+00 1526.9 1556 55.1
DCAR_006644 Daucus carota HOM05D007170 ORTHO05D009243 0.0e+00 1517.7 1527 53.2
Aqoxy3G00362 Aquilegia oxysepala HOM05D007170 ORTHO05D009243 0.0e+00 1508.8 1528 54.9
Cc02_g31000 Coffea canephora HOM05D007170 ORTHO05D009243 0.0e+00 1495.7 1462 56.1
BcaB04g18275 Brassica carinata HOM05D007170 ORTHO05D009243 0.0e+00 1494.9 1472 55.4
AL7G40850 Arabidopsis lyrata HOM05D007170 ORTHO05D009243 0.0e+00 1489.6 1482 55.9
Solyc01g097110.2 Solanum lycopersicum HOM05D007170 ORTHO05D009243 0.0e+00 1488.4 1525 53.9
Nitab4.5_0002247g0080 Nicotiana tabacum HOM05D007170 ORTHO05D009243 0.0e+00 1487.2 1544 53.9
Sopen01g040790 Solanum pennellii HOM05D007170 ORTHO05D009243 0.0e+00 1486.9 1525 54.0
PSO541G2476 Papaver somniferum HOM05D007170 ORTHO05D009243 0.0e+00 1485.3 1525 54.0
AT4G14970 Arabidopsis thaliana HOM05D007170 ORTHO05D009243 0.0e+00 1476.8 1476 55.8
A08p11580 Brassica napus HOM05D007170 ORTHO05D009243 0.0e+00 1473.4 1466 54.9
PSO675G2674 Papaver somniferum HOM05D007170 ORTHO05D009243 0.0e+00 1472.2 1529 53.6
BraA08t33150Z Brassica rapa HOM05D007170 ORTHO05D009243 0.0e+00 1470.7 1467 55.1
BolC8t48255H Brassica oleracea HOM05D007170 ORTHO05D009243 0.0e+00 1464.1 1469 54.5
Sc07g0002130 Simmondsia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1457.2 1417 55.3
BcaC07g37864 Brassica carinata HOM05D007170 ORTHO05D009243 0.0e+00 1453.3 1453 54.6
Peaxi162Scf00647g00012 Petunia axillaris HOM05D007170 ORTHO05D009243 0.0e+00 1447.6 1552 52.6
Lsat_1_v5_gn_2_66140 Lactuca sativa HOM05D007170 ORTHO05D009243 0.0e+00 1446.8 1540 53.2
HanXRQChr10g0314771 Helianthus annuus HOM05D007170 ORTHO05D009243 0.0e+00 1432.5 1515 53.3
Thhalv10024215m.g Eutrema salsugineum HOM05D007170 ORTHO05D009243 0.0e+00 1432.2 1484 53.8
Nitab4.5_0005905g0020 Nicotiana tabacum HOM05D007170 ORTHO05D009243 0.0e+00 1406.0 1541 52.0
CSS0034103 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 0.0e+00 1404.0 1239 60.7
Oeu038464.1 Olea europaea HOM05D007170 ORTHO05D009243 0.0e+00 1373.6 1578 50.4
ATR1098G002 Amborella trichopoda HOM05D007170 ORTHO05D009243 0.0e+00 1371.3 1511 50.6
SalBow8G4071 Salvia bowleyana HOM05D007170 ORTHO05D009243 0.0e+00 1355.1 1584 50.5
SGA_v2.0_scaffold172G38980 Striga asiatica HOM05D007170 ORTHO05D009243 0.0e+00 1324.7 1613 48.7
Lj7A482G28 Lonicera japonica HOM05D007170 ORTHO05D009243 0.0e+00 1278.8 1358 53.4
Cpa.g.sc8.299 Carica papaya HOM05D007170 ORTHO05D009243 0.0e+00 1278.1 1520 49.5
ECA238G4341 Erigeron canadensis HOM05D007170 ORTHO05D009243 0.0e+00 1246.1 1356 51.6
Migut.B01114 Erythranthe guttata HOM05D007170 ORTHO05D009243 1.0e-311 1074.7 1302 48.6
CSS0006494 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 7.8e-294 1014.6 981 56.4
Zm00001eb117500 Zea mays HOM05D007170 ORTHO05D009243 2.8e-291 1006.1 1272 46.1
Gohir.A07G185500 Gossypium hirsutum HOM05D007170 ORTHO05D009243 1.8e-290 1003.4 941 58.1
Dinv20277 Davidia involucrata HOM05D007170 ORTHO05D009243 4.9e-288 995.3 835 63.8
CSS0002264 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 9.6e-284 981.1 981 55.0
SEGI_23823 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 1.7e-277 960.3 1239 45.0
Os07g0154400 Oryza sativa ssp. japonica HOM05D007170 ORTHO05D009243 9.0e-266 921.4 1061 47.9
Pp3c3_20180 Physcomitrium patens HOM05D007170 ORTHO05D009243 5.8e-265 918.7 1469 38.3
Mapoly0001s0378 Marchantia polymorpha HOM05D007170 ORTHO05D009243 2.8e-259 899.8 1487 38.2
Hma1.2p1_0892F.1_g233440 Hydrangea macrophylla HOM05D007170 ORTHO05D009243 1.2e-198 698.4 544 68.0
Dinv20276 Davidia involucrata HOM05D007170 ORTHO05D009243 6.2e-198 696.0 656 58.8
AagrBONN_evm.TU.Sc2ySwM_344.1322 Anthoceros agrestis HOM05D007170 ORTHO05D009243 8.9e-197 692.2 1224 36.8
HPP92_019550 Vanilla planifolia HOM05D007170 ORTHO05D009243 9.9e-180 635.6 738 49.2
CAN.G134.71 Capsicum annuum HOM05D007170 ORTHO05D009243 1.1e-175 622.1 529 60.5
HPP92_019551 Vanilla planifolia HOM05D007170 ORTHO05D009243 3.2e-170 604.0 754 46.4
CBR_g3147 Chara braunii HOM05D007170 ORTHO05D009243 2.1e-153 548.1 967 35.2
CARHR221630 Cardamine hirsuta HOM05D007170 ORTHO05D009243 5.0e-139 500.4 393 65.4
CAN.G134.69 Capsicum annuum HOM05D007170 ORTHO05D009243 1.5e-119 435.6 713 40.0
Dinv20273 Davidia involucrata HOM05D007170 ORTHO05D009243 2.3e-75 288.9 253 60.5
Gohir.A07G185533 Gossypium hirsutum HOM05D007170 ORTHO05D009243 5.1e-67 261.2 229 61.1
CARHR221660 Cardamine hirsuta HOM05D007170 ORTHO05D009243 8.9e-64 250.4 333 45.3
CARHR221670 Cardamine hirsuta HOM05D007170 ORTHO05D009243 2.8e-57 228.8 193 62.7
CBR_g54165 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-45 188.7 236 42.8
COL.COLO4_06563 Corchorus olitorius HOM05D007170 ORTHO05D009243 1.6e-44 186.4 139 69.1
Cpa.g.sc8.300 Carica papaya HOM05D007170 ORTHO05D009243 6.0e-44 184.5 138 65.9
SEGI_21897 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 1.3e-43 183.3 264 43.2
CARHR221640 Cardamine hirsuta HOM05D007170 ORTHO05D009243 2.8e-41 175.6 147 58.5
QL08p022040 Quercus lobata HOM05D007170 ORTHO05D009243 1.1e-40 173.7 125 68.0
CDE07G1176 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 3.5e-36 158.7 157 57.3
Zm00001eb046090 Zea mays HOM05D007170 ORTHO05D009243 9.0e-32 144.1 218 39.4
Dinv20272 Davidia involucrata HOM05D007170 ORTHO05D009243 9.7e-26 124.0 125 59.2
CARHR221650 Cardamine hirsuta HOM05D007170 ORTHO05D009243 7.7e-23 114.4 196 41.3
Zm00001eb031530 Zea mays HOM05D007170 ORTHO05D009243 7.2e-21 107.8 116 46.6
Zm00001eb010760 Zea mays HOM05D007170 ORTHO05D009243 7.9e-20 104.4 116 45.7
Zm00001eb442000 Zea mays HOM05D007170 ORTHO05D009243 7.9e-20 104.4 116 45.7
MBI08_g17991_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 1.4e-16 93.6 76 61.8
COL.COLO4_06564 Corchorus olitorius HOM05D007170 ORTHO05D009243 9.1e-16 90.9 128 40.6
Carub.0007s2712 Capsella rubella HOM05D007170 ORTHO05D009243 2.9e-14 85.9 69 60.9
QL02p039588 Quercus lobata HOM05D007170 ORTHO05D009243 2.9e-14 85.9 135 38.5
GSVIVG01038387001 Vitis vinifera HOM05D007170 ORTHO05D009243 1.9e-13 83.2 50 80.0
Lj7A482T28 Lonicera japonica HOM05D007170 ORTHO05D009243 2.3e-11 76.3 120 40.8
Zm00001eb008220 Zea mays HOM05D007170 ORTHO05D009243 1.1e-08 67.4 111 38.7
CDE07G1841 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 2.4e-08 66.2 302 23.5
GSVIVG01038403001 Vitis vinifera HOM05D007170 ORTHO05D009243 2.4e-08 66.2 39 76.9
C03p18330 Brassica napus HOM05D007170 ORTHO05D041508 1.7e-06 60.1 46 56.5
TAR365G0197 Trochodendron aralioides HOM05D000751 ORTHO05D000889 1.7e-06 60.1 48 60.4
Cre10.g453650 Chlamydomonas reinhardtii HOM05D007170 ORTHO05D009243 2.2e-06 59.7 144 31.2
MBI08_g46642_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D002061 3.8e-06 58.9 47 66.0
CDE07G0977 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 8.5e-06 57.8 90 38.9


User provided reference genes

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