Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G070900 Manihot esculenta HOM05D007024 ORTHO05D008865 2.2e-100 369.0 191 100.0
Manes.08G001700 Manihot esculenta HOM05D007024 ORTHO05D008865 7.6e-69 264.2 188 75.5
Potri.006G133100 Populus trichocarpa HOM05D007024 ORTHO05D008865 5.5e-59 231.5 186 66.7
CANSAT80G1842 Cannabis sativa HOM05D007024 ORTHO05D008865 1.8e-57 226.5 180 65.6
FAN02G0668 Fragaria x ananassa HOM05D007024 ORTHO05D008865 8.7e-57 224.2 140 77.1
FvH4_6g15080 Fragaria vesca HOM05D007024 ORTHO05D008865 4.3e-56 221.9 140 76.4
Ciclev10013683m.g Citrus clementina HOM05D007024 ORTHO05D008865 7.4e-56 221.1 187 62.6
MD12G1128400 Malus domestica HOM05D007024 ORTHO05D008865 9.6e-56 220.7 191 62.3
CiPaw.09G183100 Carya illinoinensis HOM05D007024 ORTHO05D008865 1.3e-55 220.3 140 77.9
QL07p045588 Quercus lobata HOM05D007024 ORTHO05D008865 1.3e-55 220.3 190 63.7
Duzib106G2062 Durio zibethinus HOM05D007024 ORTHO05D008865 2.8e-55 219.2 188 64.4
FAN09G4212 Fragaria x ananassa HOM05D007024 ORTHO05D008865 3.7e-55 218.8 145 74.5
Gohir.A09G160700 Gossypium hirsutum HOM05D007024 ORTHO05D008865 1.1e-54 217.2 142 76.8
Cfa017486 Carpinus fangiana HOM05D007024 ORTHO05D008865 4.0e-54 215.3 138 78.3
Thecc.05G052000 Theobroma cacao HOM05D007024 ORTHO05D008865 9.0e-54 214.2 137 78.1
GSVIVG01025554001 Vitis vinifera HOM05D007024 ORTHO05D008865 1.5e-53 213.4 187 64.7
FAN14G4602 Fragaria x ananassa HOM05D007024 ORTHO05D007145 2.0e-53 213.0 128 79.7
CsaV3_4G024400 Cucumis sativus L. HOM05D007024 ORTHO05D008865 5.8e-53 211.5 143 74.8
ClCG04G008760 Citrullus lanatus HOM05D007024 ORTHO05D008865 1.0e-52 210.7 185 61.1
Gohir.D09G156400 Gossypium hirsutum HOM05D007024 ORTHO05D008865 1.0e-52 210.7 130 79.2
RcHm_v2.0_Chr3g0468261 Rosa chinensis HOM05D007024 ORTHO05D008865 1.3e-52 210.3 197 59.4
VMungo1383G1891 Vigna mungo HOM05D007024 ORTHO05D008865 2.2e-52 209.5 172 62.2
Thhalv10017137m.g Eutrema salsugineum HOM05D007024 ORTHO05D008865 1.1e-51 207.2 147 70.7
Atru.chr8.2534 Acer truncatum HOM05D007024 ORTHO05D008865 1.9e-51 206.5 192 60.4
Ca_08817_v3 Cicer arietinum L. HOM05D007024 ORTHO05D008865 2.5e-51 206.1 127 78.7
Phvul.001G173900 Phaseolus vulgaris HOM05D007024 ORTHO05D008865 2.5e-51 206.1 172 62.2
Sabra06G0104600 Salix brachista HOM05D007024 ORTHO05D008865 2.5e-51 206.1 119 83.2
COL.COLO4_10283 Corchorus olitorius HOM05D007024 ORTHO05D008865 3.2e-51 205.7 116 83.6
PGR004G2860 Punica granatum HOM05D007024 ORTHO05D008865 3.2e-51 205.7 144 70.1
TAR633G0628 Trochodendron aralioides HOM05D007024 ORTHO05D008865 3.2e-51 205.7 138 75.4
Gorai.006G177900 Gossypium raimondii HOM05D007024 ORTHO05D008865 4.2e-51 205.3 130 76.9
Lj1g0023744 Lotus japonicus HOM05D007024 ORTHO05D008865 4.2e-51 205.3 133 76.7
Medtr7g100540 Medicago truncatula HOM05D007024 ORTHO05D008865 5.5e-51 204.9 127 78.0
Sed0013795 Sechium edule HOM05D007024 ORTHO05D008865 5.5e-51 204.9 133 75.2
CARHR132350 Cardamine hirsuta HOM05D007024 ORTHO05D008865 9.3e-51 204.1 137 73.7
TPR.G39424 Trifolium pratense HOM05D007024 ORTHO05D008865 9.3e-51 204.1 150 67.3
CSS0004845 Camellia sinensis var. sinensis HOM05D007024 ORTHO05D008865 2.1e-50 203.0 115 83.5
Nitab4.5_0000848g0140 Nicotiana tabacum HOM05D007024 ORTHO05D008865 2.1e-50 203.0 171 62.6
Aa31LG5G22570 Aethionema arabicum HOM05D007024 ORTHO05D008865 2.7e-50 202.6 190 58.9
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 2.7e-50 202.6 194 59.3
THA.LOC104805324 Tarenaya hassleriana HOM05D007024 ORTHO05D008865 2.7e-50 202.6 187 58.8
Eucgr.K03198 Eucalyptus grandis HOM05D007024 ORTHO05D008865 3.5e-50 202.2 136 72.8
Haze_20672 Corylus avellana HOM05D007024 ORTHO05D008865 7.9e-50 201.1 119 79.8
BcaC02g11844 Brassica carinata HOM05D007024 ORTHO05D008865 1.0e-49 200.7 137 73.0
A05p08660 Brassica napus HOM05D007024 ORTHO05D008865 1.0e-49 200.7 137 73.0
BraA05t19834Z Brassica rapa HOM05D007024 ORTHO05D008865 1.0e-49 200.7 137 73.0
Oeu029107.1 Olea europaea HOM05D007024 ORTHO05D008865 1.0e-49 200.7 128 77.3
Psat3g045960 Pisum sativum HOM05D007024 ORTHO05D008865 1.3e-49 200.3 125 77.6
C04p10750 Brassica napus HOM05D007024 ORTHO05D008865 1.8e-49 199.9 137 73.0
BolC4t22670H Brassica oleracea HOM05D007024 ORTHO05D008865 1.8e-49 199.9 137 73.0
Peaxi162Scf01517g00138 Petunia axillaris HOM05D007024 ORTHO05D008865 1.8e-49 199.9 122 80.3
AL4G33620 Arabidopsis lyrata HOM05D007024 ORTHO05D008865 2.3e-49 199.5 175 60.6
arahy.Tifrunner.gnm1.ann1.4131RS Arachis hypogaea HOM05D007024 ORTHO05D008865 2.3e-49 199.5 144 68.1
Glyma.19G177600 Glycine max HOM05D007024 ORTHO05D008865 2.3e-49 199.5 135 70.4
Lalb_Chr20g0112901 Lupinus albus HOM05D007024 ORTHO05D008865 2.3e-49 199.5 142 70.4
AT2G37240 Arabidopsis thaliana HOM05D007024 ORTHO05D008865 3.0e-49 199.1 137 73.0
BcaB02g09297 Brassica carinata HOM05D007024 ORTHO05D008865 3.0e-49 199.1 138 71.0
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 3.0e-49 199.1 137 72.3
Migut.L01652 Erythranthe guttata HOM05D007024 ORTHO05D008865 5.1e-49 198.4 132 75.0
Sopen09g002060 Solanum pennellii HOM05D007024 ORTHO05D008865 8.7e-49 197.6 129 74.4
Nn2g10613 Nelumbo nucifera HOM05D007024 ORTHO05D008865 1.9e-48 196.4 178 59.6
CAN.G350.48 Capsicum annuum HOM05D007024 ORTHO05D008865 2.5e-48 196.1 190 57.4
PGSC0003DMG400027897 Solanum tuberosum HOM05D007024 ORTHO05D008865 2.5e-48 196.1 190 57.4
Sp4g19560 Schrenkiella parvula HOM05D007024 ORTHO05D008865 4.3e-48 195.3 185 58.4
TWI74G0989 Tripterygium wilfordii HOM05D007024 ORTHO05D008865 5.7e-48 194.9 141 68.1
Sc20g0004190 Simmondsia chinensis HOM05D007024 ORTHO05D008865 9.6e-48 194.1 140 70.7
vmacro08688 Vaccinium macrocarpon HOM05D007024 ORTHO05D008865 9.6e-48 194.1 189 58.7
Nitab4.5_0010883g0010 Nicotiana tabacum HOM05D007024 ORTHO05D008865 1.3e-47 193.7 118 78.0
Solyc09g007190.3 Solanum lycopersicum HOM05D007024 ORTHO05D008865 3.7e-47 192.2 186 56.5
Aqoxy4G03151 Aquilegia oxysepala HOM05D007024 ORTHO05D008865 6.3e-47 191.4 140 69.3
SGA_v2.0_scaffold94G28656 Striga asiatica HOM05D007024 ORTHO05D008865 6.3e-47 191.4 192 56.2
Lsat_1_v5_gn_2_109921 Lactuca sativa HOM05D007024 ORTHO05D008865 8.2e-47 191.0 130 72.3
Lj3A977T52 Lonicera japonica HOM05D007024 ORTHO05D008865 9.0e-46 187.6 141 68.1
MBI18_g34970_MAGBIO Magnolia biondii HOM05D007024 ORTHO05D008865 1.5e-45 186.8 137 69.3
unitig_746.g26783 Utricularia gibba HOM05D007024 ORTHO05D008865 2.0e-45 186.4 132 68.9
PSO063G4670 Papaver somniferum HOM05D007024 ORTHO05D008865 1.3e-44 183.7 128 69.5
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 3.8e-44 182.2 130 68.5
ECA238G1489 Erigeron canadensis HOM05D007024 ORTHO05D008865 6.5e-44 181.4 128 71.1
HanXRQChr05g0129231 Helianthus annuus HOM05D007024 ORTHO05D008865 1.1e-43 180.6 129 70.5
Hund12062 Selenicereus undatus HOM05D007024 ORTHO05D008865 1.1e-43 180.6 197 48.7
ATR0582G226 Amborella trichopoda HOM05D007024 ORTHO05D008865 3.2e-43 179.1 180 55.6
PSO782G5617 Papaver somniferum HOM05D007024 ORTHO05D008865 3.2e-43 179.1 113 71.7
Zm00001eb013030 Zea mays HOM05D007024 ORTHO05D008865 9.3e-43 177.6 133 66.2
Prupe.6G244000 Prunus persica HOM05D007024 ORTHO05D008865 4.6e-42 175.3 190 53.7
Os03g0284600 Oryza sativa ssp. japonica HOM05D007024 ORTHO05D008865 7.9e-42 174.5 125 66.4
MELO3C003072.2 Cucumis melo HOM05D007024 ORTHO05D008865 5.1e-41 171.8 147 63.3
Actinidia05279 Actinidia chinensis HOM05D007024 ORTHO05D008865 6.7e-41 171.4 94 86.2
Cc06_g03440 Coffea canephora HOM05D007024 ORTHO05D008865 1.5e-40 170.2 106 73.6
HPP92_003601 Vanilla planifolia HOM05D007024 ORTHO05D008865 1.3e-39 167.2 114 68.4
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 6.5e-36 154.8 103 67.0
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 8.5e-36 154.5 136 55.9
Hma1.2p1_0111F.1_g053680 Hydrangea macrophylla HOM05D007024 ORTHO05D008865 2.4e-30 136.3 92 76.1
Cpa.g.sc45.24 Carica papaya HOM05D007024 ORTHO05D008865 6.9e-30 134.8 74 83.8
Mapoly0154s0013 Marchantia polymorpha HOM05D007024 ORTHO05D008865 1.9e-27 126.7 137 46.7
CBR_g9017 Chara braunii HOM05D001161 ORTHO05D000497 3.6e-26 122.5 103 51.5
SEGI_25621 Sequoiadendron giganteum HOM05D007024 ORTHO05D008865 8.2e-23 111.3 76 68.4
arahy.Tifrunner.gnm1.ann1.GN5EPC Arachis hypogaea HOM05D007024 ORTHO05D008865 2.2e-20 103.2 61 75.4
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 5.0e-20 102.1 61 78.7
Glyma.03G176900 Glycine max HOM05D007024 ORTHO05D008865 7.2e-19 98.2 58 77.6
CiPaw.09G182200 Carya illinoinensis HOM05D007024 ORTHO05D008865 2.1e-18 96.7 57 78.9
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 2.7e-18 96.3 174 43.1
PGSC0003DMG400031729 Solanum tuberosum HOM05D007024 ORTHO05D008865 2.7e-18 96.3 56 78.6
CiPaw.09G182700 Carya illinoinensis HOM05D007024 ORTHO05D008865 1.4e-17 94.0 71 67.6
Zm00001eb110150 Zea mays HOM05D007024 ORTHO05D008865 3.1e-14 82.8 75 53.3
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 2.0e-13 80.1 107 40.2
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 2.7e-13 79.7 120 35.8
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 4.5e-13 79.0 121 39.7
C06p27120 Brassica napus HOM05D007024 ORTHO05D008865 4.5e-13 79.0 109 47.7
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 5.9e-13 78.6 136 34.6
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 5.9e-13 78.6 125 36.0
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 7.7e-13 78.2 144 32.6
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.0e-12 77.8 144 32.6
CDE07G1737 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 1.3e-12 77.4 72 58.3
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 1.3e-12 77.4 140 33.6
BolC6t37885H Brassica oleracea HOM05D007024 ORTHO05D008865 1.7e-12 77.0 64 64.1
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 2.2e-12 76.6 144 32.6
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 2.9e-12 76.3 115 35.7
BcaC08g45103 Brassica carinata HOM05D007024 ORTHO05D008865 5.0e-12 75.5 73 58.9
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 2.1e-10 70.1 188 31.4
COL.COLO4_27104 Corchorus olitorius HOM05D007024 ORTHO05D008865 2.7e-10 69.7 40 80.0
AagrBONN_evm.TU.Sc2ySwM_368.2780 Anthoceros agrestis HOM05D006847 ORTHO05D008685 2.8e-07 59.7 80 37.5
BcaB03g14405 Brassica carinata HOM05D033897 ORTHO05D032280 4.1e-06 55.8 100 38.0
CiPaw.06G095800 Carya illinoinensis HOM05D006847 ORTHO05D008685 4.1e-06 55.8 100 35.0
Aqoxy3G00572 Aquilegia oxysepala HOM05D006847 ORTHO05D008685 7.0e-06 55.1 132 28.8
C07p24150 Brassica napus HOM05D033897 ORTHO05D032280 7.0e-06 55.1 94 37.2
BolC7t42941H Brassica oleracea HOM05D033897 ORTHO05D032280 7.0e-06 55.1 94 37.2
PGSC0003DMG400019650 Solanum tuberosum HOM05D006847 ORTHO05D008685 9.1e-06 54.7 92 35.9


User provided reference genes

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