Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G070200 Manihot esculenta HOM05D007926 ORTHO05D009983 2.9e-51 204.9 103 100.0
TWI63G0020 Tripterygium wilfordii HOM05D007926 ORTHO05D009983 2.6e-31 138.7 90 65.6
CiPaw.09G102200 Carya illinoinensis HOM05D007926 ORTHO05D009983 3.2e-29 131.7 88 64.8
TAR627G0241 Trochodendron aralioides HOM05D007926 ORTHO05D009983 4.1e-29 131.3 92 62.0
Ciclev10017269m.g Citrus clementina HOM05D007926 ORTHO05D009983 5.4e-29 131.0 98 63.3
Potri.006G009500 Populus trichocarpa HOM05D007926 ORTHO05D009983 3.0e-27 125.2 115 54.8
Duzib192G0081 Durio zibethinus HOM05D007926 ORTHO05D009983 3.9e-27 124.8 77 63.6
Sabra06G0007300 Salix brachista HOM05D007926 ORTHO05D009983 2.5e-26 122.1 108 56.5
Manes.13G107300 Manihot esculenta HOM05D007926 ORTHO05D009983 1.6e-25 119.4 97 58.8
Prupe.4G010900 Prunus persica HOM05D007926 ORTHO05D009983 1.6e-25 119.4 87 57.5
Atru.chr1.2458 Acer truncatum HOM05D007926 ORTHO05D009983 2.1e-25 119.0 94 59.6
Cfa000107 Carpinus fangiana HOM05D007926 ORTHO05D009983 8.1e-25 117.1 88 58.0
Eucgr.E03949 Eucalyptus grandis HOM05D007926 ORTHO05D009983 1.1e-24 116.7 96 55.2
RhsimUnG0109600 Rhododendron simsii HOM05D007926 ORTHO05D009983 2.4e-24 115.5 81 56.8
FAN25G3056 Fragaria x ananassa HOM05D007926 ORTHO05D009983 4.0e-24 114.8 102 51.0
Gorai.011G009900 Gossypium raimondii HOM05D007926 ORTHO05D009983 4.0e-24 114.8 98 54.1
CSS0041628 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 5.2e-24 114.4 97 56.7
FAN21G0219 Fragaria x ananassa HOM05D007926 ORTHO05D009983 5.2e-24 114.4 108 50.0
Gohir.A10G009400 Gossypium hirsutum HOM05D007926 ORTHO05D009983 5.2e-24 114.4 98 54.1
CANSAT56G0946 Cannabis sativa HOM05D007926 ORTHO05D009983 8.9e-24 113.6 92 55.4
Rhsim13G0146200 Rhododendron simsii HOM05D007926 ORTHO05D009983 1.2e-23 113.2 81 55.6
Migut.H01604 Erythranthe guttata HOM05D007926 ORTHO05D009983 2.0e-23 112.5 79 54.4
CSS0027622 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 2.6e-23 112.1 100 52.0
FvH4_3g01020 Fragaria vesca HOM05D007926 ORTHO05D009983 2.6e-23 112.1 108 49.1
Oeu002767.1 Olea europaea HOM05D007926 ORTHO05D009983 9.9e-23 110.2 96 50.0
Glyma.15G114500 Glycine max HOM05D007926 ORTHO05D009983 1.3e-22 109.8 89 52.8
Hma1.2p1_0700F.1_g205740 Hydrangea macrophylla HOM05D007926 ORTHO05D009983 1.3e-22 109.8 97 54.6
PGR042G0446 Punica granatum HOM05D007926 ORTHO05D009983 2.2e-22 109.0 95 52.6
Sc05g0009590 Simmondsia chinensis HOM05D007926 ORTHO05D009983 4.9e-22 107.8 92 52.2
arahy.Tifrunner.gnm1.ann1.I7SJA3 Arachis hypogaea HOM05D007926 ORTHO05D009983 8.4e-22 107.1 83 54.2
Gohir.D10G009100 Gossypium hirsutum HOM05D007926 ORTHO05D009983 4.2e-21 104.8 95 50.5
Gohir.A06G205500 Gossypium hirsutum HOM05D007926 ORTHO05D009983 5.4e-21 104.4 93 55.9
Gohir.D06G216000 Gossypium hirsutum HOM05D007926 ORTHO05D009983 7.1e-21 104.0 93 54.8
Gorai.010G250100 Gossypium raimondii HOM05D007926 ORTHO05D009983 7.1e-21 104.0 93 54.8
Phvul.006G143300 Phaseolus vulgaris HOM05D007926 ORTHO05D009983 1.2e-20 103.2 96 52.1
Lalb_Chr18g0056941 Lupinus albus HOM05D007926 ORTHO05D009983 1.6e-20 102.8 93 46.2
DCAR_002220 Daucus carota HOM05D007926 ORTHO05D009983 3.5e-20 101.7 95 48.4
RcHm_v2.0_Chr5g0001551 Rosa chinensis HOM05D007926 ORTHO05D009983 4.6e-20 101.3 98 51.0
Solyc04g014750.1 Solanum lycopersicum HOM05D007926 ORTHO05D009983 6.0e-20 100.9 84 46.4
Sopen04g006860 Solanum pennellii HOM05D007926 ORTHO05D009983 6.0e-20 100.9 84 46.4
CSS0047308 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 1.3e-19 99.8 78 57.7
AUR62021866 Chenopodium quinoa HOM05D007926 ORTHO05D009983 2.3e-19 99.0 91 49.5
PGSC0003DMG400023652 Solanum tuberosum HOM05D007926 ORTHO05D009983 2.3e-19 99.0 84 46.4
Nn1g03317 Nelumbo nucifera HOM05D007926 ORTHO05D009983 3.0e-19 98.6 98 49.0
Eucgr.E03934 Eucalyptus grandis HOM05D007926 ORTHO05D009983 3.6e-17 91.7 69 55.1
MD10G1331300 Malus domestica HOM05D007926 ORTHO05D009983 3.6e-17 91.7 94 46.8
Sp1g10740 Schrenkiella parvula HOM05D007926 ORTHO05D009983 8.1e-17 90.5 67 53.7
SGA_v2.0_scaffold89G27497 Striga asiatica HOM05D007926 ORTHO05D009983 8.1e-17 90.5 95 43.2
TPR.G13087 Trifolium pratense HOM05D007926 ORTHO05D009983 1.4e-16 89.7 96 44.8
AL1G23320 Arabidopsis lyrata HOM05D007926 ORTHO05D009983 2.4e-16 89.0 93 41.9
BcaC07g41751 Brassica carinata HOM05D007926 ORTHO05D009983 2.4e-16 89.0 100 45.0
CARHR012430 Cardamine hirsuta HOM05D007926 ORTHO05D009983 4.0e-16 88.2 88 46.6
Thhalv10009916m.g Eutrema salsugineum HOM05D007926 ORTHO05D009983 5.3e-16 87.8 104 45.2
THA.LOC104809471 Tarenaya hassleriana HOM05D007926 ORTHO05D009983 5.3e-16 87.8 63 57.1
Carub.0001s1175 Capsella rubella HOM05D007926 ORTHO05D009983 6.9e-16 87.4 93 44.1
Aa31LG1G2660 Aethionema arabicum HOM05D007926 ORTHO05D009983 1.5e-15 86.3 99 41.4
A08p33040 Brassica napus HOM05D007926 ORTHO05D009983 2.6e-15 85.5 92 45.7
BcaB02g06430 Brassica carinata HOM05D007926 ORTHO05D009983 4.4e-15 84.7 100 43.0
BcaC05g25224 Brassica carinata HOM05D007926 ORTHO05D009983 4.4e-15 84.7 106 40.6
C05p11100 Brassica napus HOM05D007926 ORTHO05D009983 4.4e-15 84.7 106 40.6
BolC5t29857H Brassica oleracea HOM05D007926 ORTHO05D009983 4.4e-15 84.7 106 40.6
BraA08t35224Z Brassica rapa HOM05D007926 ORTHO05D009983 4.4e-15 84.7 92 45.7
Sed0015463 Sechium edule HOM05D007926 ORTHO05D009983 5.8e-15 84.3 84 44.0
BcaB08g37432 Brassica carinata HOM05D007926 ORTHO05D009983 7.6e-15 84.0 100 45.0
BcaC07g41734 Brassica carinata HOM05D007926 ORTHO05D009983 7.6e-15 84.0 100 45.0
BcaC07g41735 Brassica carinata HOM05D007926 ORTHO05D009983 7.6e-15 84.0 100 45.0
C08p47740 Brassica napus HOM05D007926 ORTHO05D009983 7.6e-15 84.0 98 43.9
BolC8t52311H Brassica oleracea HOM05D007926 ORTHO05D009983 9.9e-15 83.6 98 43.9
A06p09430 Brassica napus HOM05D007926 ORTHO05D009983 1.7e-14 82.8 106 41.5
BraA06t24128Z Brassica rapa HOM05D007926 ORTHO05D009983 1.7e-14 82.8 106 41.5
MELO3C021682.2 Cucumis melo HOM05D007926 ORTHO05D009983 2.2e-14 82.4 83 39.8
A09p64120 Brassica napus HOM05D007926 ORTHO05D009983 3.8e-14 81.6 98 42.9
BraA09t41758Z Brassica rapa HOM05D007926 ORTHO05D009983 3.8e-14 81.6 98 42.9
ATR0712G022 Amborella trichopoda HOM05D007926 ORTHO05D009983 7.1e-13 77.4 63 46.0
AT1G12064 Arabidopsis thaliana HOM05D007926 ORTHO05D009983 4.6e-12 74.7 95 40.0
DCAR_004887 Daucus carota HOM05D000701 ORTHO05D000531 3.0e-11 72.0 58 46.6
ClCG01G010240 Citrullus lanatus HOM05D007926 ORTHO05D009983 6.6e-11 70.9 93 36.6
HanXRQChr15g0470111 Helianthus annuus HOM05D007926 ORTHO05D009983 1.1e-10 70.1 79 40.5
Medtr2g025700 Medicago truncatula HOM05D007926 ORTHO05D009983 1.6e-09 66.2 95 33.7
Lj6g0017055 Lotus japonicus HOM05D007926 ORTHO05D009983 4.0e-08 61.6 81 40.7
BcaB02g06429 Brassica carinata HOM05D007926 ORTHO05D009983 9.9e-07 57.0 72 41.7


User provided reference genes

Program Settings