Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G064200 Manihot esculenta HOM05D006384 ORTHO05D007917 7.3e-113 410.6 212 100.0
Haze_20571 Corylus avellana HOM05D006384 ORTHO05D007917 1.8e-71 273.1 216 68.1
CiPaw.10G132500 Carya illinoinensis HOM05D006384 ORTHO05D007917 1.2e-70 270.4 226 65.5
Potri.006G126200 Populus trichocarpa HOM05D006384 ORTHO05D007917 4.9e-69 265.0 220 66.4
QL07p044018 Quercus lobata HOM05D006384 ORTHO05D007917 1.2e-67 260.4 217 65.4
Duzib093G1098 Durio zibethinus HOM05D006384 ORTHO05D007917 1.6e-67 260.0 217 67.7
Gohir.D04G111800 Gossypium hirsutum HOM05D006384 ORTHO05D007917 1.0e-66 257.3 212 66.5
Gorai.009G415700 Gossypium raimondii HOM05D006384 ORTHO05D007917 1.0e-66 257.3 212 66.5
Gohir.A04G072900 Gossypium hirsutum HOM05D006384 ORTHO05D007917 8.7e-66 254.2 212 65.6
Thecc.05G063500 Theobroma cacao HOM05D006384 ORTHO05D007917 3.3e-65 252.3 217 63.1
THA.LOC104823480 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 1.3e-64 250.4 219 63.5
Nn2g11540 Nelumbo nucifera HOM05D006384 ORTHO05D007917 1.6e-64 250.0 217 63.1
arahy.Tifrunner.gnm1.ann1.TG2889 Arachis hypogaea HOM05D006384 ORTHO05D007917 3.7e-64 248.8 214 63.6
arahy.Tifrunner.gnm1.ann1.FRB5VT Arachis hypogaea HOM05D006384 ORTHO05D007917 6.2e-64 248.1 214 64.0
TWI74G0201 Tripterygium wilfordii HOM05D006384 ORTHO05D007917 8.2e-64 247.7 213 62.4
Hma1.2p1_0205F.1_g087265 Hydrangea macrophylla HOM05D006384 ORTHO05D007917 1.4e-63 246.9 209 64.6
PGR004G0408 Punica granatum HOM05D006384 ORTHO05D007917 5.3e-63 245.0 215 62.3
MD12G1115500 Malus domestica HOM05D006384 ORTHO05D007917 2.6e-62 242.7 214 63.6
MELO3C009346.2 Cucumis melo HOM05D006384 ORTHO05D007917 7.6e-62 241.1 219 60.7
COL.COLO4_26986 Corchorus olitorius HOM05D006384 ORTHO05D001525 2.9e-61 239.2 180 67.2
ClCG10G020230 Citrullus lanatus HOM05D006384 ORTHO05D007917 1.1e-60 237.3 220 60.9
Prupe.6G234600 Prunus persica HOM05D006384 ORTHO05D007917 1.1e-60 237.3 213 61.5
Cc06_g04070 Coffea canephora HOM05D006384 ORTHO05D007917 3.2e-60 235.7 230 60.9
Atru.chr8.1840 Acer truncatum HOM05D006384 ORTHO05D007917 7.2e-60 234.6 214 61.2
FAN09G1862 Fragaria x ananassa HOM05D006384 ORTHO05D007917 9.3e-60 234.2 211 61.1
Lj2A115T51 Lonicera japonica HOM05D006384 ORTHO05D007917 9.3e-60 234.2 215 58.6
FAN02G0742 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.2e-59 233.8 211 61.1
TAR369G0955 Trochodendron aralioides HOM05D006384 ORTHO05D007917 1.2e-59 233.8 215 59.1
FvH4_6g16140 Fragaria vesca HOM05D006384 ORTHO05D007917 1.6e-59 233.4 211 61.1
RcHm_v2.0_Chr3g0469981 Rosa chinensis HOM05D006384 ORTHO05D007917 6.1e-59 231.5 218 61.9
THA.LOC104806487 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 6.1e-59 231.5 152 74.3
Sopen10g035590 Solanum pennellii HOM05D006384 ORTHO05D007917 1.3e-58 230.3 210 61.4
Cpa.g.c35130 Carica papaya HOM05D006384 ORTHO05D007917 2.3e-58 229.6 192 62.0
FAN14G1974 Fragaria x ananassa HOM05D006384 ORTHO05D007917 2.3e-58 229.6 211 60.7
FAN14G4113 Fragaria x ananassa HOM05D006384 ORTHO05D007917 2.3e-58 229.6 211 60.7
CAN.G509.15 Capsicum annuum HOM05D006384 ORTHO05D007917 3.9e-58 228.8 212 60.4
CsaV3_3G035870 Cucumis sativus L. HOM05D006384 ORTHO05D007917 5.1e-58 228.4 218 59.6
PSO339G6114 Papaver somniferum HOM05D006384 ORTHO05D007917 5.1e-58 228.4 208 62.0
AT2G37020 Arabidopsis thaliana HOM05D006384 ORTHO05D007917 6.7e-58 228.0 222 59.5
Carub.0004s1888 Capsella rubella HOM05D006384 ORTHO05D007917 6.7e-58 228.0 217 59.9
Thhalv10016975m.g Eutrema salsugineum HOM05D006384 ORTHO05D007917 6.7e-58 228.0 223 58.3
PSO801G0099 Papaver somniferum HOM05D006384 ORTHO05D007917 1.9e-57 226.5 208 60.1
Rhsim03G0093600 Rhododendron simsii HOM05D006384 ORTHO05D007917 3.3e-57 225.7 223 57.0
TAR623G0498 Trochodendron aralioides HOM05D001475 ORTHO05D001525 3.3e-57 225.7 160 71.2
Dinv37301 Davidia involucrata HOM05D006384 ORTHO05D007917 7.4e-57 224.6 209 61.2
Solyc10g086210.2 Solanum lycopersicum HOM05D006384 ORTHO05D007917 7.4e-57 224.6 210 60.0
BcaC01g05625 Brassica carinata HOM05D006384 ORTHO05D007917 9.7e-57 224.2 214 58.4
AL4G33330 Arabidopsis lyrata HOM05D006384 ORTHO05D007917 1.6e-56 223.4 212 60.8
GSVIVG01025711001 Vitis vinifera HOM05D006384 ORTHO05D007917 1.6e-56 223.4 141 73.0
ECA248G2568 Erigeron canadensis HOM05D006384 ORTHO05D007917 2.2e-56 223.0 210 58.6
SalBow5G1519 Salvia bowleyana HOM05D006384 ORTHO05D007917 2.2e-56 223.0 217 58.1
SalBow5G1643 Salvia bowleyana HOM05D006384 ORTHO05D007917 2.2e-56 223.0 217 58.1
Ah.15g092420 Amaranthus hybridus HOM05D006384 ORTHO05D007917 2.8e-56 222.6 207 57.0
HanXRQChr01g0027531 Helianthus annuus HOM05D006384 ORTHO05D007917 2.8e-56 222.6 202 61.4
Nitab4.5_0000754g0290 Nicotiana tabacum HOM05D006384 ORTHO05D007917 3.7e-56 222.2 217 57.6
Nitab4.5_0002130g0050 Nicotiana tabacum HOM05D006384 ORTHO05D007917 3.7e-56 222.2 212 59.9
Peaxi162Scf00488g00042 Petunia axillaris HOM05D006384 ORTHO05D007917 4.8e-56 221.9 137 75.2
C03p23970 Brassica napus HOM05D006384 ORTHO05D007917 6.3e-56 221.5 215 58.6
Glyma.19G182800 Glycine max HOM05D006384 ORTHO05D007917 8.2e-56 221.1 182 62.1
BolC3t14788H Brassica oleracea HOM05D006384 ORTHO05D007917 2.4e-55 219.5 215 58.1
Ca_08852_v3 Cicer arietinum L. HOM05D006384 ORTHO05D007917 4.1e-55 218.8 181 65.2
Eucgr.A01141 Eucalyptus grandis HOM05D006384 ORTHO05D007917 4.1e-55 218.8 220 56.4
Sp4g19300 Schrenkiella parvula HOM05D006384 ORTHO05D007917 5.3e-55 218.4 223 57.8
unitig_0.g684 Utricularia gibba HOM05D006384 ORTHO05D007917 6.9e-55 218.0 169 65.1
A03p20380 Brassica napus HOM05D006384 ORTHO05D007917 1.2e-54 217.2 220 56.8
BraA03t11282Z Brassica rapa HOM05D006384 ORTHO05D007917 1.2e-54 217.2 220 56.8
Lj1g0002515 Lotus japonicus HOM05D006384 ORTHO05D007917 1.2e-54 217.2 214 57.9
TPR.G9375 Trifolium pratense HOM05D006384 ORTHO05D007917 2.0e-54 216.5 155 69.0
CSS0004677 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 2.6e-54 216.1 145 72.4
CARHR131500 Cardamine hirsuta HOM05D006384 ORTHO05D007917 4.5e-54 215.3 221 55.2
ATR0680G046 Amborella trichopoda HOM05D006384 ORTHO05D007917 1.0e-53 214.2 141 71.6
CANSAT80G0575 Cannabis sativa HOM05D006384 ORTHO05D007917 1.3e-53 213.8 198 60.6
Migut.L01690 Erythranthe guttata HOM05D006384 ORTHO05D007917 1.3e-53 213.8 219 56.6
BcaB01g03801 Brassica carinata HOM05D006384 ORTHO05D007917 1.7e-53 213.4 220 54.1
Lalb_Chr20g0112661 Lupinus albus HOM05D006384 ORTHO05D007917 2.9e-53 212.6 214 55.6
Sed0012269 Sechium edule HOM05D006384 ORTHO05D007917 3.8e-53 212.2 218 56.4
MSTRG.10316 Avicennia marina HOM05D006384 ORTHO05D007917 1.4e-52 210.3 211 56.9
AUR62040461 Chenopodium quinoa HOM05D006384 ORTHO05D007917 1.9e-52 209.9 159 65.4
Aa31LG5G22260 Aethionema arabicum HOM05D006384 ORTHO05D007917 4.2e-52 208.8 148 68.9
Os10g0443200 Oryza sativa ssp. japonica HOM05D006384 ORTHO05D007917 5.5e-52 208.4 162 61.7
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 1.6e-51 206.8 138 71.0
Aqoxy2G01819 Aquilegia oxysepala HOM05D006384 ORTHO05D007917 3.6e-51 205.7 146 69.9
Medtr7g101760 Medicago truncatula HOM05D006384 ORTHO05D007917 4.6e-51 205.3 221 55.7
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 4.6e-51 205.3 181 60.8
SGA_v2.0_scaffold452G51820 Striga asiatica HOM05D006384 ORTHO05D007917 4.6e-51 205.3 214 55.6
VMungo1383G1856 Vigna mungo HOM05D006384 ORTHO05D007917 1.0e-50 204.1 212 57.1
Hund20279 Selenicereus undatus HOM05D006384 ORTHO05D007917 3.9e-50 202.2 232 50.9
Lsat_1_v5_gn_1_52961 Lactuca sativa HOM05D006384 ORTHO05D007917 8.8e-50 201.1 218 55.5
Oeu016975.2 Olea europaea HOM05D006384 ORTHO05D007917 8.8e-50 201.1 195 55.9
Phvul.001G178300 Phaseolus vulgaris HOM05D006384 ORTHO05D007917 4.3e-49 198.7 214 56.1
DCAR_009302 Daucus carota HOM05D006384 ORTHO05D007917 3.7e-48 195.7 137 65.0
CSS0039092 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.4e-47 193.7 111 81.1
CDE06G0314 Ceratophyllum demersum HOM05D006384 ORTHO05D007917 1.8e-47 193.4 137 63.5
HPP92_025998 Vanilla planifolia HOM05D006384 ORTHO05D007917 1.8e-47 193.4 156 61.5
VMungo1383G2663 Vigna mungo HOM05D006384 ORTHO05D007917 1.5e-46 190.3 213 55.4
Ciclev10013845m.g Citrus clementina HOM05D006384 ORTHO05D007917 2.0e-46 189.9 136 69.1
EL10Ac7g16562 Beta vulgaris HOM05D006384 ORTHO05D007917 2.2e-45 186.4 211 53.1
CSS0019463 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 2.2e-45 186.4 158 62.0
AUR62041978 Chenopodium quinoa HOM05D006384 ORTHO05D007917 2.5e-44 183.0 134 66.4
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 1.6e-43 180.3 137 60.6
Actinidia40017 Actinidia chinensis HOM05D006384 ORTHO05D007917 4.1e-39 165.6 149 57.7
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 3.8e-37 159.1 139 55.4
Sc20g0001670 Simmondsia chinensis HOM05D006384 ORTHO05D007917 3.1e-31 139.4 120 56.7
AagrBONN_evm.TU.Sc2ySwM_117.2066 Anthoceros agrestis HOM05D006384 ORTHO05D007917 7.0e-31 138.3 139 46.0
SMO197G0035 Selaginella moellendorffii HOM05D006384 ORTHO05D007917 2.2e-29 133.3 135 43.7
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 3.6e-27 125.9 162 41.4
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 2.3e-26 123.2 137 41.6
Glyma.03G182200 Glycine max HOM05D006384 ORTHO05D007917 2.0e-25 120.2 84 70.2
Zm00001eb222550 Zea mays HOM05D006384 ORTHO05D007917 1.3e-21 107.5 105 53.3
Cpa.g.sc2150.3 Carica papaya HOM05D006384 ORTHO05D007917 3.8e-13 79.3 61 65.6
DCAR_017395 Daucus carota HOM05D006384 ORTHO05D007917 4.7e-11 72.4 58 56.9
vmacro07280 Vaccinium macrocarpon HOM05D006384 ORTHO05D007917 1.0e-10 71.2 35 88.6
TAR374G1213 Trochodendron aralioides HOM05D000928 ORTHO05D000023 2.2e-08 63.5 46 60.9
RcHm_v2.0_Chr4g0411411 Rosa chinensis HOM05D006384 ORTHO05D007917 4.9e-08 62.4 49 65.3
MELO3C032679.2 Cucumis melo HOM05D006384 ORTHO05D007917 2.4e-07 60.1 57 56.1
DCAR_032298 Daucus carota HOM05D006384 ORTHO05D007917 2.0e-06 57.0 39 69.2
CsaV3_7G026110 Cucumis sativus L. HOM05D006384 ORTHO05D007917 5.9e-06 55.5 87 41.4


User provided reference genes

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