Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G062100 Manihot esculenta HOM05D005036 ORTHO05D005881 1.1e-76 290.4 204 100.0
Manes.08G013000 Manihot esculenta HOM05D005036 ORTHO05D005881 7.1e-57 224.6 204 84.8
Potri.016G097900 Populus trichocarpa HOM05D005036 ORTHO05D005881 1.8e-52 209.9 196 81.6
Potri.006G121500 Populus trichocarpa HOM05D005036 ORTHO05D005881 1.9e-49 199.9 201 78.6
Sabra06G0095700 Salix brachista HOM05D005036 ORTHO05D005881 2.7e-48 196.1 201 77.6
Ciclev10012800m.g Citrus clementina HOM05D005036 ORTHO05D005881 1.8e-47 193.4 205 75.1
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 6.7e-47 191.4 204 75.5
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 2.5e-46 189.5 195 78.5
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 3.3e-46 189.1 204 76.0
Actinidia32478 Actinidia chinensis HOM05D005036 ORTHO05D005881 5.7e-46 188.3 195 76.4
Nn2g13858 Nelumbo nucifera HOM05D005036 ORTHO05D005881 9.6e-46 187.6 198 74.2
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 1.6e-45 186.8 202 75.7
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 2.1e-45 186.4 204 75.5
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.8e-45 186.0 202 75.2
Atru.chr8.1751 Acer truncatum HOM05D005036 ORTHO05D005881 8.2e-45 184.5 196 75.5
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 1.4e-44 183.7 204 75.5
MD12G1106800 Malus domestica HOM05D005036 ORTHO05D005881 3.1e-44 182.6 200 74.5
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.9e-44 181.4 202 75.2
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 2.6e-43 179.5 204 66.7
PGR004G0584 Punica granatum HOM05D005036 ORTHO05D005881 3.4e-43 179.1 188 77.1
ClCG10G019890 Citrullus lanatus HOM05D005036 ORTHO05D005881 1.7e-42 176.8 203 72.4
VMungo0720G2361 Vigna mungo HOM05D005036 ORTHO05D005881 2.2e-42 176.4 198 70.2
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 2.9e-42 176.0 204 66.7
Phvul.007G151800 Phaseolus vulgaris HOM05D005036 ORTHO05D005881 5.0e-42 175.3 198 70.7
RhsimUnG0004000 Rhododendron simsii HOM05D005036 ORTHO05D005881 5.0e-42 175.3 175 75.4
RhsimUnG0067400 Rhododendron simsii HOM05D005036 ORTHO05D005881 5.0e-42 175.3 175 75.4
QL07p042294 Quercus lobata HOM05D005036 ORTHO05D005881 6.5e-42 174.9 225 64.9
TWI53G1582 Tripterygium wilfordii HOM05D005036 ORTHO05D005881 6.5e-42 174.9 193 75.6
Thecc.05G071400 Theobroma cacao HOM05D005036 ORTHO05D005881 8.5e-42 174.5 201 70.6
EL10Ac7g16693 Beta vulgaris HOM05D005036 ORTHO05D005881 1.4e-41 173.7 200 71.0
Cfa017655 Carpinus fangiana HOM05D005036 ORTHO05D005881 1.4e-41 173.7 199 66.3
Sc02g0001470 Simmondsia chinensis HOM05D005036 ORTHO05D005881 1.4e-41 173.7 198 61.6
Glyma.13G146500 Glycine max HOM05D005036 ORTHO05D005881 3.2e-41 172.6 200 69.5
CiPaw.10G127400 Carya illinoinensis HOM05D005036 ORTHO05D005881 5.5e-41 171.8 189 75.1
Lalb_Chr02g0155461 Lupinus albus HOM05D005036 ORTHO05D005881 5.5e-41 171.8 202 70.3
Gohir.A01G214100 Gossypium hirsutum HOM05D005036 ORTHO05D005881 1.2e-40 170.6 194 73.2
CSS0031942 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 1.6e-40 170.2 204 71.6
CSS0042807 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 1.6e-40 170.2 204 71.6
Haze_20497 Corylus avellana HOM05D005036 ORTHO05D005881 1.6e-40 170.2 198 65.2
Duzib128G0734 Durio zibethinus HOM05D005036 ORTHO05D005881 2.1e-40 169.9 206 69.4
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 2.7e-40 169.5 199 63.3
Duzib093G0365 Durio zibethinus HOM05D005036 ORTHO05D005881 2.7e-40 169.5 201 69.7
Glyma.10G059800 Glycine max HOM05D005036 ORTHO05D005881 2.7e-40 169.5 200 69.5
Prupe.7G125700 Prunus persica HOM05D005036 ORTHO05D005881 3.6e-40 169.1 197 73.6
TAR623G1598 Trochodendron aralioides HOM05D005036 ORTHO05D005881 3.6e-40 169.1 199 67.3
Sed0017772 Sechium edule HOM05D005036 ORTHO05D005881 1.0e-39 167.5 202 68.8
Lj5g0011319 Lotus japonicus HOM05D005036 ORTHO05D005881 1.3e-39 167.2 199 69.3
Cpa.g.sc92.91 Carica papaya HOM05D005036 ORTHO05D005881 1.8e-39 166.8 195 69.7
Gohir.D01G201000 Gossypium hirsutum HOM05D005036 ORTHO05D005881 3.0e-39 166.0 189 73.0
arahy.Tifrunner.gnm1.ann1.HJT5F9 Arachis hypogaea HOM05D005036 ORTHO05D005881 6.7e-39 164.9 183 74.3
arahy.Tifrunner.gnm1.ann1.LB0AEW Arachis hypogaea HOM05D005036 ORTHO05D005881 6.7e-39 164.9 183 74.3
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 6.7e-39 164.9 194 72.7
Psat6g076000 Pisum sativum HOM05D005036 ORTHO05D005881 8.7e-39 164.5 192 69.3
CANSAT80G0983 Cannabis sativa HOM05D005036 ORTHO05D005881 1.1e-38 164.1 197 71.6
AUR62041564 Chenopodium quinoa HOM05D005036 ORTHO05D005881 1.9e-38 163.3 199 69.8
Medtr1g062770 Medicago truncatula HOM05D005036 ORTHO05D005881 1.9e-38 163.3 192 69.3
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 1.3e-37 160.6 199 69.3
Ca_08897_v3 Cicer arietinum L. HOM05D005036 ORTHO05D005881 1.3e-37 160.6 195 69.2
GSVIVG01033679001 Vitis vinifera HOM05D005036 ORTHO05D005881 1.3e-37 160.6 186 74.7
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 2.8e-37 159.5 201 68.7
Hma1.2p1_0547F.1_g176530 Hydrangea macrophylla HOM05D005036 ORTHO05D005881 1.4e-36 157.1 175 77.7
THA.LOC104823230 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 1.4e-36 157.1 201 70.1
TPR.G20997 Trifolium pratense HOM05D005036 ORTHO05D005881 9.0e-36 154.5 182 72.5
COL.COLO4_26911 Corchorus olitorius HOM05D005036 ORTHO05D005881 1.5e-35 153.7 216 65.3
Hund20124 Selenicereus undatus HOM05D005036 ORTHO05D005881 2.0e-35 153.3 217 64.5
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 2.6e-35 152.9 175 76.6
Nitab4.5_0000132g0510 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.0e-34 151.0 201 66.2
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 1.0e-34 151.0 185 73.0
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 1.7e-34 150.2 201 69.7
HanXRQChr13g0400721 Helianthus annuus HOM05D005036 ORTHO05D005881 3.8e-34 149.1 196 68.9
vmacro08795 Vaccinium macrocarpon HOM05D005036 ORTHO05D005881 6.5e-34 148.3 230 48.7
ECA233G6008 Erigeron canadensis HOM05D005036 ORTHO05D005881 8.5e-34 147.9 198 67.7
Gorai.002G245700 Gossypium raimondii HOM05D005036 ORTHO05D005881 8.5e-34 147.9 167 76.6
PSO339G6683 Papaver somniferum HOM05D005036 ORTHO05D005881 8.5e-34 147.9 192 66.1
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 1.1e-33 147.5 194 69.1
Nitab4.5_0002373g0080 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.4e-33 147.1 203 66.5
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 1.9e-33 146.7 201 66.2
Cc06_g04530 Coffea canephora HOM05D005036 ORTHO05D005881 3.2e-33 146.0 196 67.9
Sopen10g033320 Solanum pennellii HOM05D005036 ORTHO05D005881 3.2e-33 146.0 204 66.7
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 4.2e-33 145.6 201 63.7
AL3G21130 Arabidopsis lyrata HOM05D005036 ORTHO05D005881 7.2e-33 144.8 200 60.5
Nitab4.5_0003314g0090 Nicotiana tabacum HOM05D005036 ORTHO05D005881 9.4e-33 144.4 203 65.0
AT3G09890 Arabidopsis thaliana HOM05D005036 ORTHO05D005881 2.1e-32 143.3 199 60.8
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 2.1e-32 143.3 196 68.4
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 2.1e-32 143.3 204 66.7
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 2.1e-32 143.3 201 60.7
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 2.7e-32 142.9 201 66.2
Dinv37336 Davidia involucrata HOM05D005036 ORTHO05D005881 4.6e-32 142.1 135 74.1
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 4.6e-32 142.1 196 52.6
SGA_v2.0_scaffold40G15474 Striga asiatica HOM05D005036 ORTHO05D005881 7.9e-32 141.4 204 66.2
Lsat_1_v5_gn_6_28400 Lactuca sativa HOM05D005036 ORTHO05D005881 1.0e-31 141.0 193 66.8
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 2.3e-31 139.8 191 60.7
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 3.0e-31 139.4 193 54.9
unitig_578.g16379 Utricularia gibba HOM05D000468 ORTHO05D005881 1.1e-30 137.5 195 64.1
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 3.3e-30 136.0 192 54.7
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 1.7e-29 133.7 187 42.8
DCAR_017666 Daucus carota HOM05D005036 ORTHO05D005881 2.2e-29 133.3 194 67.0
Thhalv10021529m.g Eutrema salsugineum HOM05D005036 ORTHO05D005881 2.2e-29 133.3 200 58.0
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 3.7e-29 132.5 187 42.2
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 3.7e-29 132.5 187 42.2
Sp3g08240 Schrenkiella parvula HOM05D005036 ORTHO05D005881 1.8e-28 130.2 193 48.7
BcaC01g04251 Brassica carinata HOM05D005036 ORTHO05D005881 2.4e-28 129.8 186 60.8
Aa31LG3G2370 Aethionema arabicum HOM05D005036 ORTHO05D005881 4.1e-28 129.0 181 51.4
ATR0329G020 Amborella trichopoda HOM05D005036 ORTHO05D005881 4.1e-28 129.0 160 72.5
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 5.3e-28 128.6 187 41.2
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 5.3e-28 128.6 187 41.2
BcaB03g11582 Brassica carinata HOM05D005036 ORTHO05D005881 1.2e-27 127.5 189 59.8
Carub.0003s0899 Capsella rubella HOM05D005036 ORTHO05D005881 1.2e-27 127.5 189 58.2
Lj3A990G72 Lonicera japonica HOM05D005036 ORTHO05D005881 7.7e-27 124.8 148 81.1
CDE06G0353 Ceratophyllum demersum HOM05D005036 ORTHO05D005881 2.2e-26 123.2 188 63.8
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 2.2e-26 123.2 200 51.0
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 1.9e-25 120.2 168 69.6
SEGI_13906 Sequoiadendron giganteum HOM05D005036 ORTHO05D005881 1.6e-24 117.1 186 62.4
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 3.9e-23 112.5 194 49.0
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 1.4e-20 104.0 183 49.2
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 2.6e-19 99.8 188 34.6
MBI13_g13833_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 7.7e-19 98.2 199 47.2
Sc02g0001400 Simmondsia chinensis HOM05D005036 ORTHO05D005881 7.7e-19 98.2 208 44.7
THA.LOC104816666 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 1.0e-18 97.8 85 58.8
BcaC05g29502 Brassica carinata HOM05D005036 ORTHO05D005881 3.8e-18 95.9 157 59.9
BcaC05g29503 Brassica carinata HOM05D005036 ORTHO05D005881 3.8e-18 95.9 157 59.9
C05p58170 Brassica napus HOM05D005036 ORTHO05D005881 3.8e-18 95.9 157 59.9
BolC5t34473H Brassica oleracea HOM05D005036 ORTHO05D005881 3.8e-18 95.9 157 59.9
A05p39150 Brassica napus HOM05D005036 ORTHO05D005881 6.5e-18 95.1 170 58.8
BraA05t22704Z Brassica rapa HOM05D005036 ORTHO05D005881 6.5e-18 95.1 170 58.8
BcaC05g29714 Brassica carinata HOM05D005036 ORTHO05D005881 7.2e-17 91.7 188 36.7
BcaC05g29715 Brassica carinata HOM05D005036 ORTHO05D005881 7.2e-17 91.7 188 36.7
Carub.0003s0923 Capsella rubella HOM05D005036 ORTHO05D005881 1.2e-16 90.9 139 66.9
Zm00001eb003690 Zea mays HOM05D005036 ORTHO05D005881 2.1e-16 90.1 138 69.6
BcaC05g29712 Brassica carinata HOM05D005036 ORTHO05D005881 4.7e-16 89.0 188 36.2
MBI01_g04638_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 4.7e-16 89.0 146 69.9
BcaC05g29713 Brassica carinata HOM05D005036 ORTHO05D005881 6.1e-16 88.6 188 36.2
MBI18_g12436_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.0e-15 87.8 150 66.7
Os03g0145800 Oryza sativa ssp. japonica HOM05D005036 ORTHO05D005881 1.0e-15 87.8 138 50.7
MBI15_g24508_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 6.7e-15 85.1 141 46.8
Pp3c10_11210 Physcomitrium patens HOM05D005036 ORTHO05D005881 3.3e-14 82.8 189 50.8
CBR_g9117 Chara braunii HOM05D005036 ORTHO05D005881 3.7e-13 79.3 183 55.2
MBI16_g11024_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.1e-12 77.8 146 51.4
MD04G1089000 Malus domestica HOM05D005036 ORTHO05D005881 5.3e-12 75.5 117 59.8
Psat6g104720 Pisum sativum HOM05D001839 ORTHO05D001867 9.1e-12 74.7 201 30.3
Psat4g020880 Pisum sativum HOM05D005036 ORTHO05D005881 1.6e-11 73.9 78 75.6
AagrBONN_evm.TU.Sc2ySwM_368.2717 Anthoceros agrestis HOM05D005036 ORTHO05D005881 1.7e-10 70.5 69 44.9
Ah.14g078370 Amaranthus hybridus HOM05D005036 ORTHO05D005881 1.5e-09 67.4 83 47.0
Solyc10g083870.2 Solanum lycopersicum HOM05D005036 ORTHO05D005881 1.5e-09 67.4 122 59.0
Lj3C990T8 Lonicera japonica HOM05D005036 ORTHO05D005881 5.2e-07 58.9 53 58.5
MCO14G431 Micromonas commoda HOM05D005036 ORTHO05D005881 2.6e-06 56.6 58 46.6


User provided reference genes

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