Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G058000 Manihot esculenta HOM05D007410 ORTHO05D009500 2.9e-96 357.5 830 100.0
Dinv39608 Davidia involucrata HOM05D007410 ORTHO05D009500 2.4e-26 125.2 175 65.1
Dinv34010 Davidia involucrata HOM05D007410 ORTHO05D009500 1.6e-25 122.5 171 71.9
CSS0026121 Camellia sinensis var. sinensis HOM05D007410 ORTHO05D009500 1.5e-23 115.9 175 65.7
Potri.010G249800 Populus trichocarpa HOM05D007410 ORTHO05D009500 2.5e-23 115.2 177 70.1
Duzib093G0520 Durio zibethinus HOM05D007410 ORTHO05D009500 7.2e-23 113.6 176 67.6
Haze_19526 Corylus avellana HOM05D007410 ORTHO05D009500 9.4e-23 113.2 160 43.8
Sabra10G0194300 Salix brachista HOM05D001909 ORTHO05D007079 1.2e-22 112.8 173 71.1
Prupe.7G119000 Prunus persica HOM05D007410 ORTHO05D009500 6.1e-22 110.5 175 68.6
SHI27720 Sapria himalayana HOM05D007410 ORTHO05D009500 6.1e-22 110.5 159 40.9
TWI60G0552 Tripterygium wilfordii HOM05D007410 ORTHO05D009500 1.4e-21 109.4 175 65.1
Hma1.2p1_0084F.1_g043130 Hydrangea macrophylla HOM05D007410 ORTHO05D009500 4.0e-21 107.8 175 66.9
QL02p025248 Quercus lobata HOM05D007410 ORTHO05D009500 1.1e-20 106.3 160 41.9
Cfa016527 Carpinus fangiana HOM05D007410 ORTHO05D009500 2.0e-20 105.5 160 41.9
FAN05G1927 Fragaria x ananassa HOM05D007410 ORTHO05D009500 5.7e-20 104.0 175 65.7
FAN02G1401 Fragaria x ananassa HOM05D007410 ORTHO05D009500 7.5e-20 103.6 175 65.7
Gohir.A01G210000 Gossypium hirsutum HOM05D007410 ORTHO05D009500 7.5e-20 103.6 172 65.7
RcHm_v2.0_Chr3g0471971 Rosa chinensis HOM05D007410 ORTHO05D009500 7.5e-20 103.6 175 66.9
Gohir.D01G198900 Gossypium hirsutum HOM05D007410 ORTHO05D009500 6.3e-19 100.5 172 64.5
Gorai.002G243300 Gossypium raimondii HOM05D007410 ORTHO05D009500 6.3e-19 100.5 172 64.5
MD14G1014400 Malus domestica HOM05D007410 ORTHO05D009500 2.4e-18 98.6 163 41.7
FvH4_6g17750 Fragaria vesca HOM05D007410 ORTHO05D009500 5.3e-18 97.4 175 64.0
FAN14G2442 Fragaria x ananassa HOM05D007410 ORTHO05D009500 5.3e-18 97.4 175 64.0
TAR365G0607 Trochodendron aralioides HOM05D007410 ORTHO05D009500 5.3e-18 97.4 161 37.9
MD12G1016300 Malus domestica HOM05D007410 ORTHO05D009500 7.0e-18 97.1 161 41.0
FAN09G0790 Fragaria x ananassa HOM05D007410 ORTHO05D009500 9.1e-18 96.7 175 64.0
PGR004G1775 Punica granatum HOM05D007410 ORTHO05D009500 1.2e-17 96.3 105 51.4
AUR62013683 Chenopodium quinoa HOM05D007410 ORTHO05D009500 7.7e-17 93.6 173 64.7
PGSC0003DMG400004719 Solanum tuberosum HOM05D007410 ORTHO05D009500 2.5e-15 88.6 174 57.5
Nitab4.5_0005621g0120 Nicotiana tabacum HOM05D007410 ORTHO05D009500 3.2e-15 88.2 175 62.3
Eucgr.A01557 Eucalyptus grandis HOM05D007410 ORTHO05D009500 5.5e-15 87.4 106 47.2
FAN09G1720 Fragaria x ananassa HOM05D007410 ORTHO05D009500 1.2e-14 86.3 97 51.5
Sed0018174 Sechium edule HOM05D007410 ORTHO05D009500 1.2e-14 86.3 172 61.0
Cc06_g05130 Coffea canephora HOM05D007410 ORTHO05D009500 1.6e-14 85.9 171 62.6
Nitab4.5_0026813g0010 Nicotiana tabacum HOM05D007410 ORTHO05D009500 2.7e-14 85.1 175 60.0
Sc18g0006010 Simmondsia chinensis HOM05D007410 ORTHO05D009500 2.7e-14 85.1 169 64.5
CANSAT80G0494 Cannabis sativa HOM05D007410 ORTHO05D009500 4.7e-14 84.3 162 37.7
COL.COLO4_29826 Corchorus olitorius HOM05D007410 ORTHO05D009500 4.7e-14 84.3 70 55.7
DCAR_020784 Daucus carota HOM05D007410 ORTHO05D009500 4.7e-14 84.3 102 44.1
Glyma.03G190300 Glycine max HOM05D007410 ORTHO05D009500 4.7e-14 84.3 161 61.5
DCAR_013956 Daucus carota HOM05D007410 ORTHO05D009500 8.0e-14 83.6 173 63.6
VMungo1383G0444 Vigna mungo HOM05D007410 ORTHO05D009500 1.8e-13 82.4 161 62.1
Cpa.g.sc117.70 Carica papaya HOM05D007410 ORTHO05D009500 3.0e-13 81.6 176 62.5
CiPaw.09G007900 Carya illinoinensis HOM05D007410 ORTHO05D009500 6.8e-13 80.5 143 37.8
Glyma.19G190733 Glycine max HOM05D007410 ORTHO05D009500 2.6e-12 78.6 161 59.6
CAN.G575.91 Capsicum annuum HOM05D007410 ORTHO05D009500 5.7e-12 77.4 175 54.9
Atru.chr12.1030 Acer truncatum HOM05D007410 ORTHO05D009500 9.8e-12 76.6 101 47.5
MELO3C006839.2 Cucumis melo HOM05D007410 ORTHO05D009500 1.7e-11 75.9 167 36.5
Ca_08961_v3 Cicer arietinum L. HOM05D007410 ORTHO05D009500 2.8e-11 75.1 156 63.5
ClCG05G007520 Citrullus lanatus HOM05D007410 ORTHO05D009500 2.8e-11 75.1 110 42.7
AT5G12100 Arabidopsis thaliana HOM05D007410 ORTHO05D009500 3.7e-11 74.7 172 29.7
Nn8g39918 Nelumbo nucifera HOM05D007410 ORTHO05D009500 4.8e-11 74.3 145 38.6
Phvul.001G185900 Phaseolus vulgaris HOM05D007410 ORTHO05D009500 4.8e-11 74.3 156 62.2
Medtr7g103600 Medicago truncatula HOM05D007410 ORTHO05D009500 6.3e-11 73.9 156 62.2
EL10Ac1g00861 Beta vulgaris HOM05D007410 ORTHO05D009500 1.1e-10 73.2 161 32.9
CsaV3_3G016400 Cucumis sativus L. HOM05D007410 ORTHO05D009500 1.1e-10 73.2 129 40.3
Psat2g007640 Pisum sativum HOM05D007410 ORTHO05D009500 2.4e-10 72.0 156 61.5
Rhsim03G0082200 Rhododendron simsii HOM05D007410 ORTHO05D009500 3.1e-10 71.6 144 36.8
Lj9E304T4 Lonicera japonica HOM05D007410 ORTHO05D009500 4.1e-10 71.2 105 41.9
Aqoxy1G00955 Aquilegia oxysepala HOM05D007410 ORTHO05D009500 5.4e-10 70.9 164 31.1
HanXRQChr02g0058171 Helianthus annuus HOM05D007410 ORTHO05D009500 5.4e-10 70.9 142 58.5
Solyc12g099840.1 Solanum lycopersicum HOM05D007410 ORTHO05D009500 7.0e-10 70.5 146 63.0
Lj1g0017625 Lotus japonicus HOM05D007410 ORTHO05D009500 1.2e-09 69.7 163 60.7
Ah.05g174660 Amaranthus hybridus HOM05D007410 ORTHO05D009500 1.6e-09 69.3 163 60.7
Lalb_Chr01g0018371 Lupinus albus HOM05D007410 ORTHO05D009500 4.5e-09 67.8 156 60.3
HanXRQChr17g0535541 Helianthus annuus HOM05D007410 ORTHO05D009500 7.7e-09 67.0 146 26.7
Oeu023854.1 Olea europaea HOM05D007410 ORTHO05D009500 1.3e-08 66.2 175 56.0
Atru.BG.129.p Acer truncatum HOM05D007410 ORTHO05D009500 1.7e-08 65.9 92 42.4
TPR.G28359 Trifolium pratense HOM05D007410 ORTHO05D009500 3.8e-08 64.7 156 60.9
Sopen12g034470 Solanum pennellii HOM05D007410 ORTHO05D009500 5.0e-08 64.3 146 63.0
AUR62004183 Chenopodium quinoa HOM05D007410 ORTHO05D009500 8.5e-08 63.5 173 58.4
Glyma.19G190667 Glycine max HOM05D007410 ORTHO05D009500 8.5e-08 63.5 99 39.4
Carub.0006s1061 Capsella rubella HOM05D007410 ORTHO05D009500 3.2e-07 61.6 111 38.7
CARHR201020 Cardamine hirsuta HOM05D007410 ORTHO05D009500 3.2e-07 61.6 133 38.3
Aa31LG3G15130 Aethionema arabicum HOM05D007410 ORTHO05D009500 4.2e-07 61.2 175 48.6
Migut.J00989 Erythranthe guttata HOM05D007410 ORTHO05D009500 7.2e-07 60.5 163 59.5
Migut.A01169 Erythranthe guttata HOM05D007410 ORTHO05D009500 9.4e-07 60.1 172 58.7
BolC9t59308H Brassica oleracea HOM05D007410 ORTHO05D009500 1.2e-06 59.7 108 38.0
Oeu058028.1 Olea europaea HOM05D007410 ORTHO05D009500 1.2e-06 59.7 174 55.2
HanXRQChr17g0534281 Helianthus annuus HOM05D007410 ORTHO05D009500 2.1e-06 58.9 97 35.1
Nitab4.5_0001290g0100 Nicotiana tabacum HOM05D007410 ORTHO05D009500 2.7e-06 58.5 131 33.6
BcaNung06328 Brassica carinata HOM05D007410 ORTHO05D009500 3.6e-06 58.2 138 35.5
C09p64770 Brassica napus HOM05D007410 ORTHO05D009500 8.0e-06 57.0 108 38.0
Sp6g31520 Schrenkiella parvula HOM05D007410 ORTHO05D009500 8.0e-06 57.0 132 34.8


User provided reference genes

Program Settings