Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G055100 Manihot esculenta HOM05D006980 ORTHO05D008704 1.3e-117 427.6 491 100.0
Potri.006G068700 Populus trichocarpa HOM05D006980 ORTHO05D008704 1.6e-78 297.7 224 73.2
Prupe.7G109800 Prunus persica HOM05D006980 ORTHO05D008704 1.3e-75 288.1 220 61.4
QL07p038724 Quercus lobata HOM05D006980 ORTHO05D008704 6.1e-70 269.2 167 72.5
CiPaw.09G014400 Carya illinoinensis HOM05D006980 ORTHO05D008704 1.0e-69 268.5 177 70.1
SHI12421 Sapria himalayana HOM05D006980 ORTHO05D008704 3.9e-69 266.5 222 64.9
Cfa016610 Carpinus fangiana HOM05D006980 ORTHO05D008704 8.8e-69 265.4 173 68.2
RcHm_v2.0_Chr3g0473791 Rosa chinensis HOM05D006980 ORTHO05D008704 1.1e-66 258.5 181 63.5
FAN05G0999 Fragaria x ananassa HOM05D006980 ORTHO05D008704 4.5e-65 253.1 181 63.0
QL07p038975 Quercus lobata HOM05D006980 ORTHO05D008704 1.3e-64 251.5 167 68.3
Lj1g0023344 Lotus japonicus HOM05D006980 ORTHO05D008704 2.2e-64 250.8 180 65.0
Atru.chr8.1533 Acer truncatum HOM05D006980 ORTHO05D008704 3.8e-64 250.0 179 64.8
TWI77G0642 Tripterygium wilfordii HOM05D006980 ORTHO05D008704 4.2e-63 246.5 220 53.6
CANSAT64G1568 Cannabis sativa HOM05D006980 ORTHO05D008704 7.2e-63 245.7 178 64.0
Ciclev10011570m.g Citrus clementina HOM05D006980 ORTHO05D008704 1.6e-62 244.6 182 62.1
Ah.02g130100 Amaranthus hybridus HOM05D006980 ORTHO05D008704 4.7e-62 243.0 182 62.6
PGR142G3286 Punica granatum HOM05D006980 ORTHO05D008704 3.0e-61 240.4 179 63.1
COL.COLO4_29731 Corchorus olitorius HOM05D006980 ORTHO05D008704 3.3e-60 236.9 182 59.3
Medtr7g104640 Medicago truncatula HOM05D006980 ORTHO05D008704 3.3e-60 236.9 175 61.1
CsaV3_6G007180 Cucumis sativus L. HOM05D006980 ORTHO05D008704 1.3e-59 235.0 216 55.6
Dinv21206 Davidia involucrata HOM05D006980 ORTHO05D008704 1.3e-59 235.0 180 61.1
Sed0006527 Sechium edule HOM05D006980 ORTHO05D008704 1.3e-59 235.0 220 55.9
Thecc.05G089500 Theobroma cacao HOM05D006980 ORTHO05D008704 1.7e-59 234.6 182 58.8
Eucgr.G00971 Eucalyptus grandis HOM05D006980 ORTHO05D008704 2.8e-59 233.8 178 62.9
EL10Ac6g13708 Beta vulgaris HOM05D006980 ORTHO05D008704 3.7e-59 233.4 179 60.9
Actinidia05428 Actinidia chinensis HOM05D006980 ORTHO05D008704 6.3e-59 232.6 182 57.7
Cpa.g.sc166.4 Carica papaya HOM05D006980 ORTHO05D008704 6.3e-59 232.6 222 53.2
TPR.G19555 Trifolium pratense HOM05D006980 ORTHO05D008704 8.2e-59 232.3 171 60.8
Rhsim03G0075000 Rhododendron simsii HOM05D006980 ORTHO05D008704 1.1e-58 231.9 182 58.8
Sc02g0000270 Simmondsia chinensis HOM05D006980 ORTHO05D008704 1.8e-58 231.1 179 57.5
THA.LOC104804920 Tarenaya hassleriana HOM05D006980 ORTHO05D008704 1.8e-58 231.1 179 58.7
CARHR130480 Cardamine hirsuta HOM05D006980 ORTHO05D008704 1.6e-57 228.0 178 59.0
BcaB02g09370 Brassica carinata HOM05D006980 ORTHO05D008704 3.5e-57 226.9 182 56.0
TAR633G1277 Trochodendron aralioides HOM05D006980 ORTHO05D008704 4.5e-57 226.5 216 53.7
MELO3C022409.2 Cucumis melo HOM05D006980 ORTHO05D008704 7.7e-57 225.7 217 53.9
AL4G32340 Arabidopsis lyrata HOM05D006980 ORTHO05D008704 3.8e-56 223.4 178 56.7
AT2G36240 Arabidopsis thaliana HOM05D006980 ORTHO05D008704 6.5e-56 222.6 178 56.7
Lsat_1_v5_gn_5_164841 Lactuca sativa HOM05D006980 ORTHO05D008704 8.5e-56 222.2 180 57.2
arahy.Tifrunner.gnm1.ann1.3P0NFT Arachis hypogaea HOM05D006980 ORTHO05D008704 1.5e-55 221.5 172 60.5
arahy.Tifrunner.gnm1.ann1.IK7M5W Arachis hypogaea HOM05D006980 ORTHO05D008704 1.5e-55 221.5 172 59.9
Sp4g18460 Schrenkiella parvula HOM05D006980 ORTHO05D008704 1.5e-55 221.5 178 57.9
Aa31LG5G21360 Aethionema arabicum HOM05D006980 ORTHO05D008704 1.9e-55 221.1 178 56.7
PSO541G2622 Papaver somniferum HOM05D006980 ORTHO05D008704 1.9e-55 221.1 216 52.8
ClCG06G001250 Citrullus lanatus HOM05D006980 ORTHO05D008704 2.5e-55 220.7 141 69.5
CSS0041599 Camellia sinensis var. sinensis HOM05D006980 ORTHO05D008704 5.5e-55 219.5 182 57.1
Aqoxy2G01180 Aquilegia oxysepala HOM05D006980 ORTHO05D008704 2.1e-54 217.6 178 57.3
Cc02_g28460 Coffea canephora HOM05D006980 ORTHO05D008704 8.0e-54 215.7 178 55.6
HanXRQChr02g0032651 Helianthus annuus HOM05D006980 ORTHO05D008704 8.0e-54 215.7 180 53.9
PSO675G7214 Papaver somniferum HOM05D006980 ORTHO05D008704 1.0e-53 215.3 221 52.5
AUR62014076 Chenopodium quinoa HOM05D006980 ORTHO05D008704 3.0e-53 213.8 179 56.4
BcaC02g11732 Brassica carinata HOM05D006980 ORTHO05D008704 4.0e-53 213.4 183 54.6
BolC4t22838H Brassica oleracea HOM05D006980 ORTHO05D008704 4.0e-53 213.4 183 54.6
BraA05t19913Z Brassica rapa HOM05D006980 ORTHO05D008704 1.1e-52 211.8 177 57.1
Nitab4.5_0003259g0020 Nicotiana tabacum HOM05D006980 ORTHO05D008704 1.5e-52 211.5 178 56.2
Lj2P137T25 Lonicera japonica HOM05D006980 ORTHO05D008704 3.3e-52 210.3 147 62.6
Nitab4.5_0000025g0100 Nicotiana tabacum HOM05D006980 ORTHO05D008704 3.3e-52 210.3 178 56.2
Peaxi162Scf00045g00156 Petunia axillaris HOM05D006980 ORTHO05D008704 3.3e-52 210.3 168 58.3
Lalb_Chr20g0111701 Lupinus albus HOM05D006980 ORTHO05D008704 4.4e-52 209.9 161 65.2
AUR62005415 Chenopodium quinoa HOM05D006980 ORTHO05D008704 5.7e-52 209.5 179 55.9
SalBow3G1904 Salvia bowleyana HOM05D006980 ORTHO05D008704 7.5e-52 209.1 184 53.8
C04p11900 Brassica napus HOM05D006980 ORTHO05D008704 1.3e-51 208.4 182 54.9
ECA248G2176 Erigeron canadensis HOM05D006980 ORTHO05D008704 1.7e-51 208.0 221 49.8
A05p09600 Brassica napus HOM05D006980 ORTHO05D008704 3.7e-51 206.8 179 55.9
Duzib106G0372 Durio zibethinus HOM05D006980 ORTHO05D008704 1.1e-50 205.3 182 53.3
Solyc08g006170.1 Solanum lycopersicum HOM05D006980 ORTHO05D008704 1.1e-50 205.3 178 55.1
BcaC02g11726 Brassica carinata HOM05D006980 ORTHO05D008704 1.8e-50 204.5 155 57.4
BcaC02g11728 Brassica carinata HOM05D006980 ORTHO05D008704 1.8e-50 204.5 155 57.4
Sopen08g002140 Solanum pennellii HOM05D006980 ORTHO05D008704 3.1e-50 203.8 178 54.5
PGSC0003DMG401009543 Solanum tuberosum HOM05D006980 ORTHO05D008704 3.1e-50 203.8 178 54.5
ATR0051G062 Amborella trichopoda HOM05D006980 ORTHO05D008704 5.3e-50 203.0 178 53.9
CAN.G137.42 Capsicum annuum HOM05D006980 ORTHO05D008704 5.3e-50 203.0 164 56.1
Oeu056884.1 Olea europaea HOM05D006980 ORTHO05D008704 9.1e-50 202.2 169 55.0
CAN.G2030.1 Capsicum annuum HOM05D006980 ORTHO05D008704 2.0e-49 201.1 167 54.5
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 2.0e-49 201.1 179 54.2
Gorai.009G402600 Gossypium raimondii HOM05D006980 ORTHO05D008704 7.7e-49 199.1 182 50.5
Nn6g34894 Nelumbo nucifera HOM05D006980 ORTHO05D008704 2.9e-48 197.2 147 66.0
MSTRG.19261 Avicennia marina HOM05D006980 ORTHO05D008704 3.8e-48 196.8 180 50.6
Migut.J01034 Erythranthe guttata HOM05D006980 ORTHO05D008704 1.6e-46 191.4 152 56.6
BcaC02g11731 Brassica carinata HOM05D006980 ORTHO05D008704 2.7e-46 190.7 142 57.7
SGA_v2.0_scaffold13G06715 Striga asiatica HOM05D006980 ORTHO05D008704 3.6e-46 190.3 155 54.2
GSVIVG01029738001 Vitis vinifera HOM05D006980 ORTHO05D008704 3.6e-46 190.3 180 53.3
BcaB02g09372 Brassica carinata HOM05D006980 ORTHO05D008704 3.0e-45 187.2 148 56.8
Sabra06G0051200 Salix brachista HOM05D006980 ORTHO05D008704 4.4e-44 183.3 106 77.4
Eucgr.G00972 Eucalyptus grandis HOM05D006980 ORTHO05D008704 4.8e-43 179.9 160 56.9
Cc00_g27900 Coffea canephora HOM05D006980 ORTHO05D008704 5.4e-42 176.4 178 50.0
Glyma.03G196000 Glycine max HOM05D006980 ORTHO05D008704 1.0e-40 172.2 153 55.6
Phvul.001G190300 Phaseolus vulgaris HOM05D006980 ORTHO05D008704 2.9e-40 170.6 152 53.3
GSVIVG01015930001 Vitis vinifera HOM05D006980 ORTHO05D008704 5.0e-40 169.9 178 50.0
VMungo1383G3509 Vigna mungo HOM05D006980 ORTHO05D008704 8.5e-40 169.1 152 53.3
Thhalv10016603m.g Eutrema salsugineum HOM05D006980 ORTHO05D008704 7.2e-39 166.0 182 45.6
Haze_19614 Corylus avellana HOM05D006980 ORTHO05D008704 1.4e-37 161.8 108 63.0
HPP92_011900 Vanilla planifolia HOM05D006980 ORTHO05D008704 1.8e-37 161.4 169 47.9
SEGI_13947 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 5.2e-37 159.8 180 42.8
SEGI_40503 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 5.2e-37 159.8 180 42.8
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 6.8e-37 159.5 118 57.6
FAN02G3599 Fragaria x ananassa HOM05D006980 ORTHO05D008704 1.4e-34 151.8 109 62.4
arahy.Tifrunner.gnm1.ann1.FQN2WV Arachis hypogaea HOM05D006980 ORTHO05D008704 2.9e-32 144.1 111 62.2
Ca_09007_v3 Cicer arietinum L. HOM05D006980 ORTHO05D008704 1.1e-31 142.1 106 61.3
Psat3g033240 Pisum sativum HOM05D006980 ORTHO05D008704 1.7e-27 128.3 106 57.5
DCAR_013476 Daucus carota HOM05D006980 ORTHO05D008704 1.0e-24 119.0 88 56.8
Eucgr.G00976 Eucalyptus grandis HOM05D006980 ORTHO05D008704 5.6e-23 113.2 181 38.7
Manes.07G071796 Manihot esculenta HOM05D006980 ORTHO05D008704 3.5e-17 94.0 45 93.3
Os01g0908800 Oryza sativa ssp. japonica HOM05D006980 ORTHO05D008704 2.8e-14 84.3 157 33.1
Zm00001eb365120 Zea mays HOM05D006980 ORTHO05D008704 6.8e-13 79.7 157 31.2
Ciclev10028524m.g Citrus clementina HOM05D007402 ORTHO05D003673 9.2e-10 69.3 139 29.5
Manes.11G141800 Manihot esculenta HOM05D007402 ORTHO05D003673 2.1e-09 68.2 141 31.2
FvH4_6g18780 Fragaria vesca HOM05D006980 ORTHO05D008704 1.0e-08 65.9 45 62.2
FAN14G4048 Fragaria x ananassa HOM05D006980 ORTHO05D008704 1.0e-08 65.9 45 62.2
SEGI_09666 Sequoiadendron giganteum HOM05D007402 ORTHO05D003673 1.3e-08 65.5 165 27.3
Carub.0004s1800 Capsella rubella HOM05D006980 ORTHO05D008704 5.1e-08 63.5 45 60.0
MBI06_g43058_MAGBIO Magnolia biondii HOM05D007402 ORTHO05D003673 6.6e-08 63.2 173 29.5
ATR0068G034 Amborella trichopoda HOM05D007402 ORTHO05D003673 2.5e-07 61.2 183 26.8
FAN05G0477 Fragaria x ananassa HOM05D006980 ORTHO05D008704 2.5e-07 61.2 36 75.0
MBI06_g23075_MAGBIO Magnolia biondii HOM05D007402 ORTHO05D003673 4.3e-07 60.5 173 29.5
Potri.018G093700 Populus trichocarpa HOM05D007402 ORTHO05D003673 5.6e-07 60.1 139 28.8
SGA_v2.0_scaffold32G13171 Striga asiatica HOM05D006980 ORTHO05D008704 5.6e-07 60.1 42 61.9
TWI75G1283 Tripterygium wilfordii HOM05D007402 ORTHO05D003673 7.3e-07 59.7 139 28.1
Nn7g37996 Nelumbo nucifera HOM05D007402 ORTHO05D003673 2.8e-06 57.8 139 28.1
Sabra18G0080600 Salix brachista HOM05D007402 ORTHO05D003673 4.7e-06 57.0 139 27.3
Thecc.09G259500 Theobroma cacao HOM05D007402 ORTHO05D003673 6.2e-06 56.6 139 27.3
Gohir.A08G008400 Gossypium hirsutum HOM05D007402 ORTHO05D003673 8.1e-06 56.2 139 26.6


User provided reference genes

Program Settings