Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G054200 Manihot esculenta HOM05D007825 ORTHO05D009693 6.6e-42 173.7 94 100.0
TWI74G1133 Tripterygium wilfordii HOM05D007825 ORTHO05D009693 2.2e-21 105.5 90 61.1
Dinv31697 Davidia involucrata HOM05D007825 ORTHO05D009693 1.3e-18 96.3 88 60.2
Sabra06G0163100 Salix brachista HOM05D001354 ORTHO05D007486 6.7e-18 94.0 94 55.3
Sabra16G0083000 Salix brachista HOM05D007825 ORTHO05D009693 8.7e-18 93.6 94 57.4
Eucgr.A02998 Eucalyptus grandis HOM05D007825 ORTHO05D009693 1.1e-17 93.2 95 56.8
Rhsim03G0074400 Rhododendron simsii HOM05D001257 ORTHO05D007181 1.5e-17 92.8 83 56.6
Potri.016G078700 Populus trichocarpa HOM05D007825 ORTHO05D009693 7.4e-17 90.5 94 55.3
Prupe.7G104600 Prunus persica HOM05D007825 ORTHO05D009693 1.3e-16 89.7 92 54.3
Duzib093G1765 Durio zibethinus HOM05D007825 ORTHO05D009693 1.6e-16 89.4 94 54.3
Potri.006G211600 Populus trichocarpa HOM05D007825 ORTHO05D009693 1.6e-16 89.4 90 52.2
GSVIVG01033861001 Vitis vinifera HOM05D007825 ORTHO05D009693 2.2e-16 89.0 83 55.4
Actinidia07924 Actinidia chinensis HOM05D001354 ORTHO05D007486 3.7e-16 88.2 94 46.8
Cpa.g.sc5.6 Carica papaya HOM05D007825 ORTHO05D009693 4.8e-16 87.8 89 55.1
COL.COLO4_29710 Corchorus olitorius HOM05D007825 ORTHO05D009693 6.3e-16 87.4 94 54.3
Lj5g0027478 Lotus japonicus HOM05D007825 ORTHO05D009693 1.1e-15 86.7 94 48.9
Thecc.05G090800 Theobroma cacao HOM05D007825 ORTHO05D009693 1.1e-15 86.7 92 54.3
MD12G1027000 Malus domestica HOM05D007825 ORTHO05D009693 3.1e-15 85.1 85 49.4
QL07p038635 Quercus lobata HOM05D007825 ORTHO05D009693 3.1e-15 85.1 82 54.9
Solyc09g009930.2 Solanum lycopersicum HOM05D007825 ORTHO05D009693 5.3e-15 84.3 88 50.0
Sopen09g004680 Solanum pennellii HOM05D007825 ORTHO05D009693 6.9e-15 84.0 88 50.0
Glyma.19G194978 Glycine max HOM05D007825 ORTHO05D009693 2.0e-14 82.4 95 50.5
Lalb_Chr10g0096381 Lupinus albus HOM05D007825 ORTHO05D009693 2.0e-14 82.4 88 53.4
TPR.G9902 Trifolium pratense HOM05D007825 ORTHO05D009693 2.6e-14 82.0 89 48.3
Medtr1g059820 Medicago truncatula HOM05D007825 ORTHO05D009693 3.4e-14 81.6 94 42.6
Atru.chr2.2492 Acer truncatum HOM05D007825 ORTHO05D009693 4.5e-14 81.3 92 51.1
Cc06_g05960 Coffea canephora HOM05D007825 ORTHO05D009693 5.9e-14 80.9 89 51.7
THA.LOC104799760 Tarenaya hassleriana HOM05D007825 ORTHO05D009693 5.9e-14 80.9 85 52.9
EL10Ac7g16903 Beta vulgaris HOM05D007825 ORTHO05D009693 7.7e-14 80.5 90 50.0
DCAR_013397 Daucus carota HOM05D007825 ORTHO05D009693 7.7e-14 80.5 86 52.3
Sc07g0005630 Simmondsia chinensis HOM05D007825 ORTHO05D009693 7.7e-14 80.5 89 50.6
Ca_00897_v3 Cicer arietinum L. HOM05D007825 ORTHO05D009693 1.0e-13 80.1 94 42.6
SalBow3G1626 Salvia bowleyana HOM05D007825 ORTHO05D009693 1.3e-13 79.7 105 43.8
Haze_12107 Corylus avellana HOM05D001354 ORTHO05D007486 1.7e-13 79.3 94 52.1
AUR62006195 Chenopodium quinoa HOM05D007825 ORTHO05D009693 2.2e-13 79.0 92 48.9
CARHR162440 Cardamine hirsuta HOM05D007825 ORTHO05D009693 2.9e-13 78.6 87 51.7
AL5G33400 Arabidopsis lyrata HOM05D007825 ORTHO05D009693 3.8e-13 78.2 87 50.6
Sp5g09670 Schrenkiella parvula HOM05D007825 ORTHO05D009693 3.8e-13 78.2 94 53.2
BcaB01g00352 Brassica carinata HOM05D007825 ORTHO05D009693 5.0e-13 77.8 89 50.6
BcaC07g39631 Brassica carinata HOM05D007825 ORTHO05D009693 5.0e-13 77.8 89 50.6
A09p45710 Brassica napus HOM05D007825 ORTHO05D009693 5.0e-13 77.8 89 50.6
BraA09t40032Z Brassica rapa HOM05D007825 ORTHO05D009693 5.0e-13 77.8 89 50.6
Thhalv10010896m.g Eutrema salsugineum HOM05D007825 ORTHO05D009693 5.0e-13 77.8 94 51.1
Lalb_Chr17g0338831 Lupinus albus HOM05D007825 ORTHO05D009693 5.0e-13 77.8 83 54.2
PGSC0003DMG400008872 Solanum tuberosum HOM05D007825 ORTHO05D009693 5.0e-13 77.8 88 46.6
C08p27910 Brassica napus HOM05D007825 ORTHO05D009693 6.5e-13 77.4 89 50.6
BolC8t50406H Brassica oleracea HOM05D007825 ORTHO05D009693 6.5e-13 77.4 89 50.6
BcaB02g07824 Brassica carinata HOM05D007825 ORTHO05D009693 8.5e-13 77.0 89 51.7
Glyma.13G154500 Glycine max HOM05D007825 ORTHO05D009693 8.5e-13 77.0 94 48.9
AT3G52620 Arabidopsis thaliana HOM05D007825 ORTHO05D009693 1.4e-12 76.3 87 50.6
Phvul.001G191100 Phaseolus vulgaris HOM05D007825 ORTHO05D009693 1.4e-12 76.3 95 47.4
CiPaw.09G015200 Carya illinoinensis HOM05D007825 ORTHO05D009693 1.9e-12 75.9 93 49.5
AUR62037026 Chenopodium quinoa HOM05D007825 ORTHO05D009693 1.9e-12 75.9 92 47.8
Lalb_Chr02g0154901 Lupinus albus HOM05D007825 ORTHO05D009693 1.9e-12 75.9 94 48.9
arahy.Tifrunner.gnm1.ann1.KBFV5H Arachis hypogaea HOM05D001354 ORTHO05D007486 3.2e-12 75.1 88 45.5
Carub.0005s1904 Capsella rubella HOM05D007825 ORTHO05D009693 9.4e-12 73.6 87 49.4
Cfa009073 Carpinus fangiana HOM05D007825 ORTHO05D009693 9.4e-12 73.6 96 50.0
MD14G1027100 Malus domestica HOM05D007825 ORTHO05D009693 9.4e-12 73.6 93 45.2
Psat3g207080 Pisum sativum HOM05D007825 ORTHO05D009693 9.4e-12 73.6 94 41.5
Ah.15g090680 Amaranthus hybridus HOM05D007825 ORTHO05D009693 1.2e-11 73.2 91 47.3
ClCG10G018870 Citrullus lanatus HOM05D007825 ORTHO05D009693 1.2e-11 73.2 86 51.2
DCAR_013400 Daucus carota HOM05D007825 ORTHO05D009693 1.6e-11 72.8 84 45.2
Phvul.003G041100 Phaseolus vulgaris HOM05D007825 ORTHO05D009693 1.6e-11 72.8 94 43.6
FAN05G0267 Fragaria x ananassa HOM05D007825 ORTHO05D009693 2.7e-11 72.0 87 50.6
MELO3C009481.2 Cucumis melo HOM05D007825 ORTHO05D009693 3.6e-11 71.6 87 51.7
CsaV3_3G037370 Cucumis sativus L. HOM05D007825 ORTHO05D009693 3.6e-11 71.6 87 51.7
arahy.Tifrunner.gnm1.ann1.S2NT6M Arachis hypogaea HOM05D007825 ORTHO05D009693 4.6e-11 71.2 79 46.8
Aa31LG10G7690 Aethionema arabicum HOM05D007825 ORTHO05D009693 6.1e-11 70.9 88 46.6
FAN14G3782 Fragaria x ananassa HOM05D007825 ORTHO05D009693 6.1e-11 70.9 87 50.6
Migut.J01022 Erythranthe guttata HOM05D007825 ORTHO05D009693 1.8e-10 69.3 101 44.6
FAN02G3309 Fragaria x ananassa HOM05D007825 ORTHO05D009693 1.8e-10 69.3 87 50.6
FAN14G2292 Fragaria x ananassa HOM05D007825 ORTHO05D009693 1.8e-10 69.3 87 50.6
Peaxi162Scf00404g00115 Petunia axillaris HOM05D007825 ORTHO05D009693 3.9e-10 68.2 88 43.2
Sed0008191 Sechium edule HOM05D007825 ORTHO05D009693 3.9e-10 68.2 91 45.1
Glyma.09G026600 Glycine max HOM05D007825 ORTHO05D009693 5.7e-09 64.3 94 44.7
Glyma.10G074000 Glycine max HOM05D007825 ORTHO05D009693 5.7e-09 64.3 94 41.5
Aqoxy2G01123 Aquilegia oxysepala HOM05D007825 ORTHO05D009693 3.7e-08 61.6 84 39.3
Nn2g14176 Nelumbo nucifera HOM05D007825 ORTHO05D009693 1.1e-07 60.1 87 46.0
RcHm_v2.0_Chr3g0474201 Rosa chinensis HOM05D007825 ORTHO05D009693 1.1e-07 60.1 88 43.2
TAR633G2289 Trochodendron aralioides HOM05D007825 ORTHO05D009693 2.4e-07 58.9 86 40.7
arahy.Tifrunner.gnm1.ann1.24RTVW Arachis hypogaea HOM05D007825 ORTHO05D009693 4.1e-07 58.2 89 41.6
arahy.Tifrunner.gnm1.ann1.L43FYW Arachis hypogaea HOM05D007825 ORTHO05D009693 4.1e-07 58.2 89 41.6
Aqoxy4G02759 Aquilegia oxysepala HOM05D007825 ORTHO05D009693 5.3e-07 57.8 93 39.8
unitig_578.g16364 Utricularia gibba HOM05D001354 ORTHO05D007486 9.1e-07 57.0 94 35.1
SalBow7G1966 Salvia bowleyana HOM05D007825 ORTHO05D009693 5.9e-06 54.3 61 41.0
TAR623G0830 Trochodendron aralioides HOM05D007825 ORTHO05D009693 7.7e-06 53.9 89 36.0


User provided reference genes

Program Settings