Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G050900 Manihot esculenta HOM05D007252 ORTHO05D009074 9.6e-29 129.4 63 100.0
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 1.3e-22 109.0 63 82.5
Potri.006G207600 Populus trichocarpa HOM05D007252 ORTHO05D009074 1.6e-20 102.1 62 77.4
Duzib093G1663 Durio zibethinus HOM05D007252 ORTHO05D009074 1.1e-19 99.4 63 74.6
Cfa016655 Carpinus fangiana HOM05D007252 ORTHO05D009074 1.4e-19 99.0 61 80.3
Thecc.05G097600 Theobroma cacao HOM05D007252 ORTHO05D009074 3.1e-19 97.8 63 74.6
COL.COLO4_29654 Corchorus olitorius HOM05D007252 ORTHO05D009074 6.9e-19 96.7 63 73.0
MD14G1032500 Malus domestica HOM05D007252 ORTHO05D009074 1.5e-18 95.5 62 69.4
Gohir.A11G318300 Gossypium hirsutum HOM05D007252 ORTHO05D009074 2.0e-18 95.1 63 73.0
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 2.6e-18 94.7 62 74.2
Gohir.D11G337600 Gossypium hirsutum HOM05D007252 ORTHO05D009074 3.4e-18 94.4 63 71.4
Gorai.007G367600 Gossypium raimondii HOM05D007252 ORTHO05D009074 3.4e-18 94.4 63 71.4
Cpa.g.sc104.83 Carica papaya HOM05D007252 ORTHO05D009074 2.9e-17 91.3 63 69.8
PGR142G0020 Punica granatum HOM05D007252 ORTHO05D009074 8.5e-17 89.7 63 71.4
RcHm_v2.0_Chr3g0474991 Rosa chinensis HOM05D007252 ORTHO05D009074 1.9e-16 88.6 62 62.9
Sc20g0006500 Simmondsia chinensis HOM05D007252 ORTHO05D009074 2.5e-16 88.2 60 68.3
AT3G11591 Arabidopsis thaliana HOM05D007252 ORTHO05D009074 4.2e-16 87.4 59 69.5
CiPaw.10G013500 Carya illinoinensis HOM05D007252 ORTHO05D009074 4.2e-16 87.4 62 67.7
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 5.5e-16 87.0 59 72.9
Prupe.7G100100 Prunus persica HOM05D007252 ORTHO05D009074 3.6e-15 84.3 63 61.9
CARHR086150 Cardamine hirsuta HOM05D007252 ORTHO05D009074 1.0e-14 82.8 59 67.8
BcaB04g21127 Brassica carinata HOM05D007252 ORTHO05D009074 2.3e-14 81.6 59 64.4
BcaC09g48182 Brassica carinata HOM05D007252 ORTHO05D009074 2.3e-14 81.6 59 64.4
BolC1t05305H Brassica oleracea HOM05D007252 ORTHO05D009074 2.3e-14 81.6 59 64.4
FAN09G1620 Fragaria x ananassa HOM05D007252 ORTHO05D009074 3.0e-14 81.3 62 59.7
Migut.L01811 Erythranthe guttata HOM05D007252 ORTHO05D009074 3.9e-14 80.9 63 61.9
Aa31LG3G4990 Aethionema arabicum HOM05D007252 ORTHO05D009074 6.7e-14 80.1 63 65.1
BNapus_Darmor_BZH_scaffold_145p00090 Brassica napus HOM05D007252 ORTHO05D009074 6.7e-14 80.1 59 62.7
BraA01t04175Z Brassica rapa HOM05D007252 ORTHO05D009074 6.7e-14 80.1 59 62.7
Sabra06G0159800 Salix brachista HOM05D002789 ORTHO05D009074 2.5e-13 78.2 47 74.5
Lalb_Chr21g0315921 Lupinus albus HOM05D007252 ORTHO05D009074 3.3e-13 77.8 63 61.9
Lj5g0009107 Lotus japonicus HOM05D007252 ORTHO05D009074 1.6e-12 75.5 63 57.1
DCAR_020730 Daucus carota HOM05D006095 ORTHO05D001225 6.3e-12 73.6 48 72.9
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 1.4e-11 72.4 58 58.6
CANSAT80G1100 Cannabis sativa HOM05D007252 ORTHO05D009074 4.1e-11 70.9 53 58.5
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 5.3e-11 70.5 53 60.4
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 6.9e-11 70.1 53 62.3
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 6.9e-11 70.1 53 62.3
Medtr1g058260 Medicago truncatula HOM05D007252 ORTHO05D009074 9.1e-11 69.7 58 55.2
Aa31LG5G12260 Aethionema arabicum HOM05D007252 ORTHO05D009074 1.2e-10 69.3 53 56.6
Glyma.02G200400 Glycine max HOM05D007252 ORTHO05D009074 1.2e-10 69.3 62 48.4
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 1.2e-10 69.3 57 56.1
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 1.2e-10 69.3 60 55.0
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 1.5e-10 68.9 53 62.3
COL.COLO4_09763 Corchorus olitorius HOM05D007252 ORTHO05D009074 1.5e-10 68.9 53 62.3
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 1.5e-10 68.9 57 56.1
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 2.0e-10 68.6 57 56.1
Manes.03G134300 Manihot esculenta HOM05D007252 ORTHO05D009074 2.6e-10 68.2 53 60.4
Thecc.07G024200 Theobroma cacao HOM05D007252 ORTHO05D009074 3.4e-10 67.8 53 60.4
RcHm_v2.0_Chr5g0041991 Rosa chinensis HOM05D007252 ORTHO05D009074 4.5e-10 67.4 53 54.7
Aqoxy6G01551 Aquilegia oxysepala HOM05D007252 ORTHO05D009074 5.9e-10 67.0 52 59.6
BcaB03g12504 Brassica carinata HOM05D007252 ORTHO05D009074 5.9e-10 67.0 53 56.6
BcaC09g50629 Brassica carinata HOM05D007252 ORTHO05D009074 5.9e-10 67.0 53 56.6
BcaC09g52252 Brassica carinata HOM05D007252 ORTHO05D009074 5.9e-10 67.0 53 56.6
A08p20750 Brassica napus HOM05D007252 ORTHO05D009074 5.9e-10 67.0 53 56.6
C01p22730 Brassica napus HOM05D007252 ORTHO05D009074 5.9e-10 67.0 53 56.6
BolC1t02202H Brassica oleracea HOM05D007252 ORTHO05D009074 5.9e-10 67.0 53 56.6
MD11G1206600 Malus domestica HOM05D007252 ORTHO05D009074 5.9e-10 67.0 53 52.8
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 5.9e-10 67.0 53 58.5
A01p17930 Brassica napus HOM05D007252 ORTHO05D009074 7.7e-10 66.6 53 56.6
BraA01t01748Z Brassica rapa HOM05D007252 ORTHO05D009074 7.7e-10 66.6 53 56.6
FvH4_3g23810 Fragaria vesca HOM05D007252 ORTHO05D009074 1.3e-09 65.9 53 52.8
FAN11G0552 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.3e-09 65.9 53 52.8
FAN21G1608 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.3e-09 65.9 53 52.8
Prupe.4G229900 Prunus persica HOM05D007252 ORTHO05D009074 1.3e-09 65.9 53 50.9
AL7G26180 Arabidopsis lyrata HOM05D007252 ORTHO05D009074 1.7e-09 65.5 53 54.7
BolC8t48668H Brassica oleracea HOM05D007252 ORTHO05D009074 1.7e-09 65.5 53 56.6
BraA08t34029Z Brassica rapa HOM05D007252 ORTHO05D009074 1.7e-09 65.5 53 54.7
Carub.0007s1418 Capsella rubella HOM05D007252 ORTHO05D009074 1.7e-09 65.5 53 54.7
CAN.G337.42 Capsicum annuum HOM05D007252 ORTHO05D009074 1.7e-09 65.5 57 54.4
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 3.8e-09 64.3 53 54.7
Sc07g0002910 Simmondsia chinensis HOM05D007252 ORTHO05D009074 5.0e-09 63.9 53 52.8
BcaC07g38242 Brassica carinata HOM05D007252 ORTHO05D009074 8.5e-09 63.2 53 54.7
C08p09910 Brassica napus HOM05D007252 ORTHO05D009074 8.5e-09 63.2 53 54.7
PGSC0003DMG402022195 Solanum tuberosum HOM05D007252 ORTHO05D009074 1.1e-08 62.8 57 50.9
Lsat_1_v5_gn_0_15441 Lactuca sativa HOM05D007252 ORTHO05D009074 1.4e-08 62.4 53 54.7
Sed0008758 Sechium edule HOM05D007252 ORTHO05D009074 1.4e-08 62.4 58 50.0
AUR62015933 Chenopodium quinoa HOM05D007252 ORTHO05D009074 1.9e-08 62.0 53 54.7
Glyma.10G076300 Glycine max HOM05D007252 ORTHO05D009074 2.5e-08 61.6 58 46.6
Phvul.007G231000 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 2.5e-08 61.6 60 46.7
Eucgr.F03517 Eucalyptus grandis HOM05D007252 ORTHO05D009074 3.2e-08 61.2 53 49.1
Potri.008G011620 Populus trichocarpa HOM05D007252 ORTHO05D009074 3.2e-08 61.2 53 50.9
SalBow8G3523 Salvia bowleyana HOM05D007252 ORTHO05D009074 3.2e-08 61.2 54 51.9
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 4.2e-08 60.8 53 52.8
Ciclev10003084m.g Citrus clementina HOM05D007252 ORTHO05D009074 5.5e-08 60.5 53 52.8
MD03G1190100 Malus domestica HOM05D007252 ORTHO05D009074 5.5e-08 60.5 52 51.9
HanXRQChr03g0076961 Helianthus annuus HOM05D007252 ORTHO05D009074 7.2e-08 60.1 53 49.1
VMungo0540G2390 Vigna mungo HOM05D007252 ORTHO05D009074 7.2e-08 60.1 53 52.8
CsaV3_6G040900 Cucumis sativus L. HOM05D007252 ORTHO05D009074 9.4e-08 59.7 61 52.5
CARHR234280 Cardamine hirsuta HOM05D007252 ORTHO05D009074 1.2e-07 59.3 53 50.9
ECA240G2584 Erigeron canadensis HOM05D007252 ORTHO05D009074 1.2e-07 59.3 53 52.8
ClCG04G010260 Citrullus lanatus HOM05D007252 ORTHO05D009074 1.6e-07 58.9 54 53.7
AUR62040676 Chenopodium quinoa HOM05D007252 ORTHO05D009074 2.7e-07 58.2 53 50.9
Actinidia39080 Actinidia chinensis HOM05D007252 ORTHO05D009074 4.6e-07 57.4 62 46.8
SHI26548 Sapria himalayana HOM05D007252 ORTHO05D009074 4.6e-07 57.4 46 56.5
Nn2g15499 Nelumbo nucifera HOM05D007252 ORTHO05D009074 6.1e-07 57.0 55 49.1
Phvul.006G051100 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 7.9e-07 56.6 53 45.3
ECA240G2620 Erigeron canadensis HOM05D000132 ORTHO05D000058 1.4e-06 55.8 58 46.6
Migut.M01689 Erythranthe guttata HOM05D007252 ORTHO05D009074 1.4e-06 55.8 50 54.0
FAN17G0382 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.4e-06 55.8 42 59.5
HPP92_005058 Vanilla planifolia HOM05D007563 ORTHO05D009546 2.3e-06 55.1 55 50.9
Cpa.g.c35309 Carica papaya HOM05D007252 ORTHO05D009074 6.7e-06 53.5 44 59.1
Lalb_Chr15g0081811 Lupinus albus HOM05D007252 ORTHO05D009074 8.8e-06 53.1 53 41.5
Lalb_Chr15g0081831 Lupinus albus HOM05D007252 ORTHO05D009074 8.8e-06 53.1 53 41.5
Lalb_Chr15g0081851 Lupinus albus HOM05D007252 ORTHO05D009074 8.8e-06 53.1 53 41.5
Lalb_Chr15g0081871 Lupinus albus HOM05D007252 ORTHO05D009074 8.8e-06 53.1 53 41.5


User provided reference genes

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