Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G048478 Manihot esculenta HOM05D005722 ORTHO05D007934 0.0e+00 1106.7 562 100.0
Duzib128G0866 Durio zibethinus HOM05D005722 ORTHO05D007934 3.2e-248 861.7 570 78.4
Cfa016476 Carpinus fangiana HOM05D005722 ORTHO05D007934 5.4e-248 860.9 565 78.6
Potri.006G119500 Populus trichocarpa HOM05D005722 ORTHO05D007934 7.1e-248 860.5 571 79.7
CSS0018899 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 1.5e-245 852.8 574 76.7
Sabra06G0094100 Salix brachista HOM05D005722 ORTHO05D007934 3.3e-245 851.7 497 86.1
QL07p041452 Quercus lobata HOM05D005722 ORTHO05D007934 5.6e-245 850.9 571 76.7
CiPaw.09G004900 Carya illinoinensis HOM05D005722 ORTHO05D007934 3.6e-244 848.2 496 84.9
Prupe.7G123300 Prunus persica HOM05D005722 ORTHO05D007934 1.8e-243 845.9 576 75.5
Gohir.A09G143300 Gossypium hirsutum HOM05D005722 ORTHO05D007934 4.1e-240 834.7 571 75.3
TWI74G0410 Tripterygium wilfordii HOM05D005722 ORTHO05D007934 3.5e-239 831.6 578 74.9
TAR623G1222 Trochodendron aralioides HOM05D005722 ORTHO05D007934 1.7e-238 829.3 573 75.0
Thecc.05G075200 Theobroma cacao HOM05D005722 ORTHO05D007934 3.0e-238 828.6 578 74.7
Hma1.2p1_0547F.1_g176330 Hydrangea macrophylla HOM05D005722 ORTHO05D007934 5.1e-238 827.8 568 74.8
FAN05G4610 Fragaria x ananassa HOM05D005722 ORTHO05D007934 6.6e-238 827.4 575 74.1
FAN05G1451 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.9e-237 825.9 575 73.9
Atru.chr8.1708 Acer truncatum HOM05D005722 ORTHO05D007934 2.5e-237 825.5 556 76.3
CSS0022139 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 7.3e-237 823.9 500 81.6
RcHm_v2.0_Chr3g0471261 Rosa chinensis HOM05D005722 ORTHO05D007934 3.6e-236 821.6 576 72.7
COL.COLO4_22250 Corchorus olitorius HOM05D005722 ORTHO05D007934 1.1e-235 820.1 494 82.2
Gorai.006G160000 Gossypium raimondii HOM05D005722 ORTHO05D007934 1.8e-235 819.3 575 74.4
Cpa.g.sc5.129 Carica papaya HOM05D005722 ORTHO05D007934 2.4e-235 818.9 506 80.4
Peaxi162Scf00138g00041 Petunia axillaris HOM05D005722 ORTHO05D007934 8.9e-235 817.0 506 80.2
Rhsim03G0086400 Rhododendron simsii HOM05D005722 ORTHO05D007934 2.0e-234 815.8 561 74.9
AUR62026979 Chenopodium quinoa HOM05D005722 ORTHO05D007934 4.4e-234 814.7 567 74.6
FvH4_6g17170 Fragaria vesca HOM05D005722 ORTHO05D007934 5.8e-234 814.3 507 79.7
Cc06_g04740 Coffea canephora HOM05D005722 ORTHO05D007934 1.3e-233 813.1 506 79.6
CANSAT56G0690 Cannabis sativa HOM05D005722 ORTHO05D007934 8.4e-233 810.4 569 73.1
Ciclev10011424m.g Citrus clementina HOM05D005722 ORTHO05D007934 8.4e-233 810.4 535 77.9
AUR62042706 Chenopodium quinoa HOM05D005722 ORTHO05D007934 4.2e-232 808.1 566 74.4
MD12G1103200 Malus domestica HOM05D005722 ORTHO05D007934 2.1e-231 805.8 575 72.7
Lj1g0006800 Lotus japonicus HOM05D005722 ORTHO05D007934 2.7e-231 805.4 565 73.8
Ah.08g211270 Amaranthus hybridus HOM05D005722 ORTHO05D007934 6.6e-230 800.8 577 73.0
EL10Ac7g16706 Beta vulgaris HOM05D005722 ORTHO05D007934 2.5e-229 798.9 502 81.1
Glyma.13G147700 Glycine max HOM05D005722 ORTHO05D007934 3.6e-228 795.0 572 72.7
Migut.J00472 Erythranthe guttata HOM05D005722 ORTHO05D007934 4.8e-228 794.7 490 79.8
MSTRG.19206 Avicennia marina HOM05D005722 ORTHO05D007934 8.1e-228 793.9 575 71.1
CAN.G1038.3 Capsicum annuum HOM05D005722 ORTHO05D007934 1.1e-227 793.5 571 72.3
vmacro23004 Vaccinium macrocarpon HOM05D005722 ORTHO05D007934 1.8e-227 792.7 505 79.0
Aqoxy1G01041 Aquilegia oxysepala HOM05D005722 ORTHO05D007934 3.1e-227 792.0 559 73.2
Glyma.10G063100 Glycine max HOM05D005722 ORTHO05D007934 5.3e-227 791.2 571 72.3
PGSC0003DMG400003879 Solanum tuberosum HOM05D005722 ORTHO05D007934 2.6e-226 788.9 496 79.6
Lalb_Chr02g0155431 Lupinus albus HOM05D005722 ORTHO05D007934 4.4e-226 788.1 491 80.0
Nitab4.5_0004731g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 7.6e-226 787.3 503 78.5
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 4.9e-225 784.6 495 78.6
Lj5g0013810 Lotus japonicus HOM05D005722 ORTHO05D007934 8.4e-225 783.9 542 73.1
Phvul.007G226300 Phaseolus vulgaris HOM05D005722 ORTHO05D007934 1.4e-224 783.1 569 71.9
Medtr1g062130 Medicago truncatula HOM05D005722 ORTHO05D007934 1.9e-224 782.7 494 78.7
Sopen09g003380 Solanum pennellii HOM05D005722 ORTHO05D007934 1.9e-224 782.7 493 78.9
PGR004G2571 Punica granatum HOM05D005722 ORTHO05D007934 5.4e-224 781.2 572 72.2
PSO063G5110 Papaver somniferum HOM05D005722 ORTHO05D007934 2.1e-223 779.2 574 70.7
Nn2g13890 Nelumbo nucifera HOM05D005722 ORTHO05D007934 4.6e-223 778.1 567 70.4
Ca_04564_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 1.0e-222 776.9 536 73.9
PSO339G6299 Papaver somniferum HOM05D005722 ORTHO05D007934 1.0e-222 776.9 573 70.7
VMungo0720G2103 Vigna mungo HOM05D005722 ORTHO05D007934 3.9e-222 775.0 493 77.5
Haze_19473 Corylus avellana HOM05D005722 ORTHO05D007934 1.1e-221 773.5 451 84.9
TPR.G31667 Trifolium pratense HOM05D005722 ORTHO05D007934 1.5e-221 773.1 562 70.8
THA.LOC104816667 Tarenaya hassleriana HOM05D005722 ORTHO05D007934 4.3e-221 771.5 470 81.1
Lalb_Chr25g0288811 Lupinus albus HOM05D005722 ORTHO05D007934 5.6e-221 771.2 569 71.2
Medtr7g102810 Medicago truncatula HOM05D005722 ORTHO05D007934 3.6e-220 768.5 551 71.5
SalBow3G1081 Salvia bowleyana HOM05D005722 ORTHO05D007934 3.6e-220 768.5 504 76.6
SalBow3G1392 Salvia bowleyana HOM05D005722 ORTHO05D007934 1.4e-219 766.5 504 76.4
Carub.0006s0238 Capsella rubella HOM05D005722 ORTHO05D007934 6.9e-219 764.2 583 67.6
Psat3g038760 Pisum sativum HOM05D005722 ORTHO05D007934 6.9e-219 764.2 548 71.7
C03p01590 Brassica napus HOM05D005722 ORTHO05D007934 2.6e-218 762.3 511 75.1
Sc20g0005780 Simmondsia chinensis HOM05D005722 ORTHO05D007934 3.4e-218 761.9 505 76.4
A03p01230 Brassica napus HOM05D005722 ORTHO05D007934 4.5e-218 761.5 515 74.0
BolC3t12711H Brassica oleracea HOM05D005722 ORTHO05D007934 9.9e-218 760.4 511 75.0
Lsat_1_v5_gn_2_20401 Lactuca sativa HOM05D005722 ORTHO05D007934 9.9e-218 760.4 576 68.9
TPR.G22453 Trifolium pratense HOM05D005722 ORTHO05D007934 9.9e-218 760.4 533 73.2
Gohir.D09G139600 Gossypium hirsutum HOM05D005722 ORTHO05D007934 2.2e-217 759.2 550 71.1
Sp6g39190 Schrenkiella parvula HOM05D005722 ORTHO05D007934 2.2e-217 759.2 489 76.5
CARHR209770 Cardamine hirsuta HOM05D005722 ORTHO05D007934 2.9e-217 758.8 490 76.1
BraA03t09503Z Brassica rapa HOM05D005722 ORTHO05D007934 3.8e-217 758.4 515 73.6
Psat6g077240 Pisum sativum HOM05D005722 ORTHO05D007934 3.8e-217 758.4 566 69.3
Gorai.006G160100 Gossypium raimondii HOM05D005722 ORTHO05D007934 6.4e-217 757.7 558 70.4
AT5G03555 Arabidopsis thaliana HOM05D005722 ORTHO05D007934 8.4e-217 757.3 554 69.9
arahy.Tifrunner.gnm1.ann1.D7QF3J Arachis hypogaea HOM05D005722 ORTHO05D007934 8.4e-217 757.3 477 78.8
arahy.Tifrunner.gnm1.ann1.P0W3IN Arachis hypogaea HOM05D005722 ORTHO05D007934 8.4e-217 757.3 477 78.8
Thhalv10015725m.g Eutrema salsugineum HOM05D005722 ORTHO05D007934 1.1e-216 756.9 483 76.6
AL6G13040 Arabidopsis lyrata HOM05D005722 ORTHO05D007934 2.4e-216 755.7 491 76.0
Aa31LG1G21640 Aethionema arabicum HOM05D005722 ORTHO05D007934 3.2e-216 755.4 593 67.3
Gohir.D09G139500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 3.2e-216 755.4 521 75.6
ECA238G3369 Erigeron canadensis HOM05D005722 ORTHO05D007934 5.4e-216 754.6 548 70.6
Gohir.A09G143500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.0e-214 750.4 549 70.9
Solyc09g008550.4 Solanum lycopersicum HOM05D005722 ORTHO05D007934 3.0e-214 748.8 469 78.3
ClCG10G019670 Citrullus lanatus HOM05D005722 ORTHO05D007934 1.3e-212 743.4 559 67.3
SGA_v2.0_scaffold75G24819 Striga asiatica HOM05D005722 ORTHO05D007934 2.1e-212 742.7 562 68.3
MBI18_g39612_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 6.2e-212 741.1 562 68.0
unitig_578.g15784 Utricularia gibba HOM05D005722 ORTHO05D007934 1.1e-211 740.3 523 71.3
HanXRQChr14g0432851 Helianthus annuus HOM05D005722 ORTHO05D007934 1.5e-210 736.5 494 74.7
MELO3C009405.2 Cucumis melo HOM05D005722 ORTHO05D007934 1.0e-209 733.8 564 67.4
FAN02G1363 Fragaria x ananassa HOM05D005722 ORTHO05D007934 7.9e-207 724.2 489 75.3
FAN14G5091 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.8e-206 723.0 442 80.8
CsaV3_3G036500 Cucumis sativus L. HOM05D005722 ORTHO05D007934 2.3e-206 722.6 563 66.6
Sed0005717 Sechium edule HOM05D005722 ORTHO05D007934 8.7e-206 720.7 553 66.2
Nitab4.5_0003906g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 2.0e-202 709.5 503 73.0
GSVIVG01033705001 Vitis vinifera HOM05D005722 ORTHO05D007934 2.8e-196 689.1 561 65.8
ATR0009G019 Amborella trichopoda HOM05D005722 ORTHO05D007934 2.6e-194 682.6 488 68.4
Cfa016468 Carpinus fangiana HOM05D005722 ORTHO05D007934 3.2e-192 675.6 447 77.4
Dinv35829 Davidia involucrata HOM05D005722 ORTHO05D007934 9.4e-192 674.1 479 73.5
Eucgr.A01597 Eucalyptus grandis HOM05D005722 ORTHO05D007934 6.7e-190 667.9 567 63.0
Ca_30109_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 5.7e-189 664.8 409 78.0
SEGI_35570 Sequoiadendron giganteum HOM05D005722 ORTHO05D007934 1.2e-186 657.1 476 66.8
MBI18_g31623_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 1.9e-184 649.8 487 66.1
MBI18_g19054_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 2.5e-184 649.4 487 65.5
MBI18_g39457_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 4.2e-184 648.7 487 65.9
HPP92_025568 Vanilla planifolia HOM05D005722 ORTHO05D007934 7.7e-178 627.9 466 67.8
Os02g0666700 Oryza sativa ssp. japonica HOM05D005722 ORTHO05D007934 2.5e-176 622.9 480 64.0
Cc06_g04750 Coffea canephora HOM05D005722 ORTHO05D007934 6.7e-174 614.8 499 62.3
Zm00001eb249990 Zea mays HOM05D005722 ORTHO05D007934 3.7e-172 609.0 471 62.8
CDE08G1312 Ceratophyllum demersum HOM05D005722 ORTHO05D007934 5.5e-168 595.1 471 67.9
Mapoly0002s0120 Marchantia polymorpha HOM05D005722 ORTHO05D007934 4.1e-163 578.9 475 57.1
Pp3c1_30640 Physcomitrium patens HOM05D005722 ORTHO05D007934 1.5e-160 570.5 476 58.4
Pp3c14_20990 Physcomitrium patens HOM05D005722 ORTHO05D007934 2.5e-160 569.7 474 58.4
SMO115G0026 Selaginella moellendorffii HOM05D005722 ORTHO05D007934 5.2e-158 562.0 483 59.0
Actinidia26637 Actinidia chinensis HOM05D005722 ORTHO05D007934 1.5e-149 533.9 447 64.2
Actinidia28931 Actinidia chinensis HOM05D005722 ORTHO05D007934 6.6e-145 518.5 372 71.8
Lj2P123T37 Lonicera japonica HOM05D005722 ORTHO05D007934 1.9e-139 500.4 320 78.8
Cre09.g389356 Chlamydomonas reinhardtii HOM05D005722 ORTHO05D007934 6.0e-138 495.4 474 50.6
Sc20g0005800 Simmondsia chinensis HOM05D005722 ORTHO05D007934 4.7e-135 485.7 333 75.1
MCO11G702 Micromonas commoda HOM05D005722 ORTHO05D007934 4.0e-126 456.1 492 48.8
PRCOL_00006021 Prasinoderma coloniale HOM05D005722 ORTHO05D007934 1.2e-122 444.5 493 47.3
Haze_19472 Corylus avellana HOM05D005722 ORTHO05D007934 5.5e-75 286.2 210 68.1
Cfa025019 Carpinus fangiana HOM05D005722 ORTHO05D123305 3.5e-61 240.4 486 31.5
Haze_02843 Corylus avellana HOM05D005722 ORTHO05D029153 6.7e-57 226.1 135 80.0
Sc20g0005790 Simmondsia chinensis HOM05D005722 ORTHO05D029153 4.7e-42 176.8 114 74.6
Pp3s34_270 Physcomitrium patens HOM05D005722 ORTHO05D317165 2.9e-36 157.5 426 27.0
TPR.G39511 Trifolium pratense HOM05D005722 ORTHO05D029153 7.8e-29 132.9 72 86.1
Lsat_1_v5_gn_4_152401 Lactuca sativa HOM05D005722 ORTHO05D007934 2.0e-24 118.2 80 81.2
MCO10G252 Micromonas commoda HOM05D005722 ORTHO05D270642 4.0e-17 94.0 420 28.1
MCO11G808 Micromonas commoda HOM05D005722 ORTHO05D268580 6.8e-17 93.2 418 24.6
FAN14G5603 Fragaria x ananassa HOM05D005722 ORTHO05D029153 9.8e-16 89.4 64 68.8
Cfa016469 Carpinus fangiana HOM05D005722 ORTHO05D125356 1.9e-06 58.5 28 92.9


User provided reference genes

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