Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G044900 Manihot esculenta HOM05D007097 ORTHO05D008131 5.6e-127 457.6 227 100.0
Manes.08G033000 Manihot esculenta HOM05D007097 ORTHO05D008131 1.1e-87 327.0 217 76.5
Sabra06G0157000 Salix brachista HOM05D007097 ORTHO05D008131 9.3e-74 280.8 236 62.3
TWI74G0793 Tripterygium wilfordii HOM05D007097 ORTHO05D008131 5.1e-64 248.4 229 57.2
Gorai.006G149800 Gossypium raimondii HOM05D007097 ORTHO05D008131 3.8e-59 232.3 222 53.2
CiPaw.09G020600 Carya illinoinensis HOM05D007097 ORTHO05D008131 5.7e-55 218.4 237 52.3
Gohir.D09G131100 Gossypium hirsutum HOM05D007097 ORTHO05D008131 5.7e-55 218.4 222 50.5
Cpa.g.sc104.37 Carica papaya HOM05D007097 ORTHO05D008131 7.4e-55 218.0 236 50.8
Gohir.A09G134600 Gossypium hirsutum HOM05D007097 ORTHO05D008131 2.2e-54 216.5 223 50.7
Prupe.7G095200 Prunus persica HOM05D007097 ORTHO05D008131 6.3e-54 214.9 240 47.5
COL.COLO4_29582 Corchorus olitorius HOM05D007097 ORTHO05D008131 3.1e-53 212.6 219 50.7
MD12G1039700 Malus domestica HOM05D007097 ORTHO05D008131 5.9e-52 208.4 249 49.8
Thecc.05G103600 Theobroma cacao HOM05D007097 ORTHO05D008131 5.9e-52 208.4 222 50.9
Haze_20191 Corylus avellana HOM05D007097 ORTHO05D008131 7.9e-49 198.0 240 50.4
Cfa020025 Carpinus fangiana HOM05D007097 ORTHO05D008131 1.4e-48 197.2 252 48.4
MD14G1038300 Malus domestica HOM05D007097 ORTHO05D008131 3.3e-47 192.6 245 45.7
FAN02G1136 Fragaria x ananassa HOM05D007097 ORTHO05D008131 4.4e-47 192.2 245 48.2
FvH4_6g20260 Fragaria vesca HOM05D007097 ORTHO05D008131 4.8e-46 188.7 245 46.9
FAN05G2168 Fragaria x ananassa HOM05D007097 ORTHO05D008131 2.4e-45 186.4 233 46.8
Nn6g34702 Nelumbo nucifera HOM05D007097 ORTHO05D008131 4.1e-45 185.7 260 43.8
FAN09G3875 Fragaria x ananassa HOM05D007097 ORTHO05D008131 7.0e-45 184.9 245 45.3
FAN14G0555 Fragaria x ananassa HOM05D007097 ORTHO05D008131 1.5e-44 183.7 236 46.2
FAN05G0285 Fragaria x ananassa HOM05D007097 ORTHO05D008131 2.0e-44 183.3 242 47.1
ClCG10G018390 Citrullus lanatus HOM05D007097 ORTHO05D008131 1.3e-43 180.6 244 42.2
RcHm_v2.0_Chr3g0475851 Rosa chinensis HOM05D007097 ORTHO05D008131 6.7e-40 168.3 254 40.2
Atru.chr8.1373 Acer truncatum HOM05D007097 ORTHO05D008131 3.7e-38 162.5 220 44.5
Ciclev10012818m.g Citrus clementina HOM05D007097 ORTHO05D008131 4.8e-38 162.2 230 43.0
VMungo0720G1866 Vigna mungo HOM05D007097 ORTHO05D008131 8.2e-38 161.4 232 41.4
Glyma.03G201700 Glycine max HOM05D007097 ORTHO05D008131 1.8e-37 160.2 223 43.5
Dinv31755 Davidia involucrata HOM05D007097 ORTHO05D008131 4.1e-37 159.1 241 39.4
Nn2g14294 Nelumbo nucifera HOM05D007097 ORTHO05D008131 5.3e-37 158.7 251 40.2
Sed0014531 Sechium edule HOM05D007097 ORTHO05D008131 1.2e-36 157.5 241 39.8
Sed0025399 Sechium edule HOM05D007097 ORTHO05D008131 7.7e-36 154.8 229 39.7
Actinidia37742 Actinidia chinensis HOM05D007097 ORTHO05D008131 1.3e-35 154.1 254 38.6
TAR633G2246 Trochodendron aralioides HOM05D007097 ORTHO05D008131 1.7e-35 153.7 257 38.9
Lalb_Chr01g0017871 Lupinus albus HOM05D007097 ORTHO05D008131 8.5e-35 151.4 239 41.4
Solyc10g081930.1 Solanum lycopersicum HOM05D007097 ORTHO05D008131 1.5e-34 150.6 246 37.4
Sopen10g032440 Solanum pennellii HOM05D007097 ORTHO05D008131 1.5e-34 150.6 246 37.4
PGSC0003DMG400028148 Solanum tuberosum HOM05D007097 ORTHO05D008131 5.5e-34 148.7 245 38.4
CAN.G1245.7 Capsicum annuum HOM05D007097 ORTHO05D008131 1.6e-33 147.1 243 37.4
Cc06_g06500 Coffea canephora HOM05D007097 ORTHO05D008131 1.6e-33 147.1 269 34.9
Lalb_Chr20g0111401 Lupinus albus HOM05D007097 ORTHO05D008131 8.0e-33 144.8 235 38.7
DCAR_020707 Daucus carota HOM05D007097 ORTHO05D008131 2.3e-32 143.3 228 39.0
Glyma.10G081100 Glycine max HOM05D007097 ORTHO05D008131 3.0e-32 142.9 238 37.8
HPP92_025143 Vanilla planifolia HOM05D007097 ORTHO05D008131 3.0e-32 142.9 252 34.5
HPP92_026079 Vanilla planifolia HOM05D007097 ORTHO05D008131 1.5e-31 140.6 252 34.1
MELO3C009534.2 Cucumis melo HOM05D007097 ORTHO05D008131 2.6e-31 139.8 244 36.1
CsaV3_3G037910 Cucumis sativus L. HOM05D007097 ORTHO05D008131 3.4e-31 139.4 245 35.9
Lsat_1_v5_gn_1_57020 Lactuca sativa HOM05D007097 ORTHO05D008131 4.4e-31 139.0 232 36.2
Rhsim03G0065800 Rhododendron simsii HOM05D007097 ORTHO05D008131 5.7e-31 138.7 243 37.4
QL07p036825 Quercus lobata HOM05D007097 ORTHO05D008131 9.8e-31 137.9 264 36.0
Phvul.007G268300 Phaseolus vulgaris HOM05D007097 ORTHO05D008131 4.1e-29 132.5 237 36.7
TAR623G1722 Trochodendron aralioides HOM05D007097 ORTHO05D008131 4.1e-29 132.5 257 34.6
Migut.J00707 Erythranthe guttata HOM05D007097 ORTHO05D008131 5.4e-29 132.1 271 32.8
Nitab4.5_0000020g0090 Nicotiana tabacum HOM05D007097 ORTHO05D008131 9.1e-29 131.3 250 36.0
Lsat_1_v5_gn_2_55400 Lactuca sativa HOM05D007097 ORTHO05D008131 1.2e-28 131.0 238 35.3
Lalb_Chr25g0288011 Lupinus albus HOM05D007097 ORTHO05D008131 1.2e-28 131.0 237 36.7
Medtr1g057600 Medicago truncatula HOM05D007097 ORTHO05D008131 1.3e-27 127.5 231 34.2
AUR62006282 Chenopodium quinoa HOM05D007097 ORTHO05D008131 2.2e-27 126.7 259 37.1
Peaxi162Scf00211g00105 Petunia axillaris HOM05D007097 ORTHO05D008131 2.2e-27 126.7 232 36.6
Ca_11701_v3 Cicer arietinum L. HOM05D007097 ORTHO05D008131 2.9e-27 126.3 219 36.5
Lj5g0024854 Lotus japonicus HOM05D007097 ORTHO05D008131 6.5e-27 125.2 253 35.2
DCAR_009176 Daucus carota HOM05D007097 ORTHO05D008131 1.1e-26 124.4 223 36.8
Nitab4.5_0005325g0010 Nicotiana tabacum HOM05D007097 ORTHO05D008131 1.5e-26 124.0 247 34.4
ATR0772G224 Amborella trichopoda HOM05D007097 ORTHO05D008131 1.9e-26 123.6 226 37.2
SGA_v2.0_scaffold31G12846 Striga asiatica HOM05D007097 ORTHO05D008131 1.9e-26 123.6 260 33.1
Sopen01g003170 Solanum pennellii HOM05D007097 ORTHO05D008131 7.2e-26 121.7 239 35.6
HanXRQChr09g0239941 Helianthus annuus HOM05D007097 ORTHO05D008131 9.4e-26 121.3 239 31.8
Glyma.02G197300 Glycine max HOM05D007097 ORTHO05D008131 1.2e-25 120.9 231 34.2
PGSC0003DMG400016423 Solanum tuberosum HOM05D007097 ORTHO05D008131 1.2e-25 120.9 250 33.6
SGA_v2.0_scaffold35G14013 Striga asiatica HOM05D007097 ORTHO05D008131 1.6e-25 120.6 226 32.3
HanXRQChr13g0398381 Helianthus annuus HOM05D007097 ORTHO05D008131 2.1e-25 120.2 242 31.8
SGA_v2.0_scaffold13G06627 Striga asiatica HOM05D007097 ORTHO05D008131 2.7e-25 119.8 280 31.8
Sc02g0000610 Simmondsia chinensis HOM05D007097 ORTHO05D008131 6.1e-25 118.6 173 42.2
Solyc01g007190.3 Solanum lycopersicum HOM05D007097 ORTHO05D008131 1.4e-24 117.5 243 34.6
HanXRQChr01g0025661 Helianthus annuus HOM05D007097 ORTHO05D008131 1.8e-24 117.1 228 32.0
TPR.G2776 Trifolium pratense HOM05D007097 ORTHO05D008131 6.8e-24 115.2 269 31.2
Nitab4.5_0001287g0020 Nicotiana tabacum HOM05D007097 ORTHO05D008131 2.6e-23 113.2 223 33.6
Eucgr.K02617 Eucalyptus grandis HOM05D007097 ORTHO05D008131 4.4e-23 112.5 230 36.5
Psat6g114400 Pisum sativum HOM05D007097 ORTHO05D008131 4.4e-23 112.5 230 32.2
unitig_578.g16474 Utricularia gibba HOM05D007097 ORTHO05D008131 4.4e-23 112.5 253 31.6
ECA248G2186 Erigeron canadensis HOM05D007097 ORTHO05D008131 7.5e-23 111.7 238 31.5
SalBow5G4860 Salvia bowleyana HOM05D007097 ORTHO05D008131 1.7e-22 110.5 214 35.0
Actinidia37743 Actinidia chinensis HOM05D007097 ORTHO05D008131 6.3e-22 108.6 133 46.6
AUR62026332 Chenopodium quinoa HOM05D007097 ORTHO05D008131 8.3e-22 108.2 243 34.2
Zm00001eb065580 Zea mays HOM05D007097 ORTHO05D008131 9.1e-21 104.8 263 30.4
Actinidia06180 Actinidia chinensis HOM05D000517 ORTHO05D008131 1.6e-20 104.0 247 31.6
unitig_22.g5144 Utricularia gibba HOM05D007097 ORTHO05D008131 4.5e-20 102.4 261 29.9
Ah.08g210070 Amaranthus hybridus HOM05D007097 ORTHO05D008131 5.9e-20 102.1 241 33.2
Nn1g01483 Nelumbo nucifera HOM05D007097 ORTHO05D008131 1.3e-19 100.9 136 44.1
Os04g0685700 Oryza sativa ssp. japonica HOM05D007097 ORTHO05D008131 1.3e-19 100.9 245 31.0
GSVIVG01033951001 Vitis vinifera HOM05D009231 ORTHO05D010800 8.6e-19 98.2 178 35.4
Lsat_1_v5_gn_1_58041 Lactuca sativa HOM05D007097 ORTHO05D008131 5.6e-18 95.5 226 29.2
Zm00001eb434190 Zea mays HOM05D007097 ORTHO05D008131 1.0e-16 91.3 249 30.9
Nn2g13712 Nelumbo nucifera HOM05D007097 ORTHO05D008131 3.4e-15 86.3 129 41.1
Nitab4.5_0010913g0010 Nicotiana tabacum HOM05D007097 ORTHO05D008131 7.5e-15 85.1 218 29.8
HanXRQChr16g0532971 Helianthus annuus HOM05D007097 ORTHO05D008131 2.9e-14 83.2 109 39.4
ECA233G1347 Erigeron canadensis HOM05D007097 ORTHO05D008131 1.2e-12 77.8 224 27.7
SEGI_34425 Sequoiadendron giganteum HOM05D017347 ORTHO05D008131 2.5e-10 70.1 118 31.4
Ah.08g210060 Amaranthus hybridus HOM05D007097 ORTHO05D008131 9.5e-10 68.2 103 36.9
Mapoly0048s0108 Marchantia polymorpha HOM05D017347 ORTHO05D008131 9.5e-10 68.2 125 32.8
SMO119G0030 Selaginella moellendorffii HOM05D017347 ORTHO05D008131 9.5e-10 68.2 115 32.2
Pp3c10_10040 Physcomitrium patens HOM05D017347 ORTHO05D008131 4.7e-09 65.9 114 33.3
Peaxi162Scf00388g01015 Petunia axillaris HOM05D007097 ORTHO05D008131 8.0e-09 65.1 72 41.7
CBR_g27764 Chara braunii HOM05D017347 ORTHO05D008131 8.9e-08 61.6 114 34.2
Nn8g40734 Nelumbo nucifera HOM05D007097 ORTHO05D008131 1.5e-07 60.8 190 29.5
SEGI_18590 Sequoiadendron giganteum HOM05D017347 ORTHO05D008131 4.4e-07 59.3 97 32.0
EL10Ac7g16802 Beta vulgaris HOM05D007097 ORTHO05D008131 6.4e-06 55.5 238 26.5


User provided reference genes

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