Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 0.0e+00 1686.4 863 100.0
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 0.0e+00 1568.9 868 93.5
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 0.0e+00 1090.1 870 67.7
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 0.0e+00 1088.2 870 67.4
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 5.9e-312 1073.5 853 67.5
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 1.4e-308 1062.8 878 65.0
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 3.0e-306 1055.0 880 63.2
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 7.4e-305 1050.4 869 63.1
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 1.8e-298 1029.2 877 62.7
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 2.5e-297 1025.4 878 62.3
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 5.7e-297 1024.2 866 61.3
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 4.8e-296 1021.1 866 61.2
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 6.9e-295 1017.3 866 61.3
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 2.2e-293 1012.3 878 60.9
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 1.4e-290 1003.0 864 61.1
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 9.1e-287 990.3 877 59.1
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 1.3e-285 986.5 882 60.7
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 5.0e-285 984.6 881 60.2
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 3.6e-283 978.4 872 58.8
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.4e-279 966.5 887 59.8
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.4e-279 965.7 878 57.9
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 4.1e-279 964.9 878 59.1
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 2.6e-278 962.2 746 66.5
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.0e-277 958.0 878 57.6
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 1.4e-276 956.4 733 66.2
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 4.7e-275 951.4 878 59.7
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 6.7e-274 947.6 882 56.8
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 2.0e-273 946.0 920 57.3
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 9.7e-273 943.7 887 58.9
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 2.0e-270 936.0 890 57.6
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 4.5e-270 934.9 853 61.3
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.9e-270 934.5 878 56.7
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.2e-269 932.6 878 56.7
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 3.6e-267 925.2 882 55.9
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 1.7e-261 906.4 862 55.6
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 2.9e-261 905.6 876 56.8
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 1.6e-259 899.8 935 55.5
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 1.6e-259 899.8 907 55.3
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 2.1e-259 899.4 831 56.6
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 2.6e-257 892.5 879 55.6
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 1.7e-256 889.8 871 54.1
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 2.2e-256 889.4 879 55.3
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 2.4e-255 885.9 943 52.6
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 9.1e-255 884.0 864 57.9
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.0e-254 882.9 894 54.1
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 2.3e-253 879.4 876 54.6
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 5.0e-253 878.2 875 54.4
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.4e-250 870.2 873 52.1
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 3.5e-246 855.5 855 53.3
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 3.5e-246 855.5 877 53.5
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 3.5e-246 855.5 874 53.5
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 1.0e-245 854.0 878 54.1
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 1.0e-245 854.0 877 52.9
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 5.0e-245 851.7 877 53.1
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 8.6e-245 850.9 880 53.3
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 3.6e-243 845.5 871 53.6
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 1.4e-242 843.6 872 52.2
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 2.6e-241 839.3 724 61.9
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 9.8e-241 837.4 875 52.7
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 5.4e-239 831.6 881 51.8
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 1.6e-238 830.1 880 51.8
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 8.6e-237 824.3 875 52.2
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 9.2e-231 804.3 692 59.5
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 8.6e-229 797.7 896 49.7
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 9.5e-228 794.3 644 63.7
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 8.1e-227 791.2 877 49.6
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 1.5e-225 786.9 942 48.3
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 1.6e-222 776.9 898 48.8
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 1.0e-221 774.2 881 49.1
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 1.5e-220 770.4 876 48.7
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 2.5e-220 769.6 722 55.4
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 4.3e-220 768.8 887 49.3
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 2.1e-219 766.5 881 49.5
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 8.1e-219 764.6 855 49.6
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 1.2e-217 760.8 881 49.3
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 2.0e-217 760.0 871 49.4
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 4.4e-217 758.8 692 56.2
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 3.9e-213 745.7 906 48.2
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 6.6e-213 745.0 879 47.9
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 1.9e-212 743.4 875 48.3
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 7.3e-212 741.5 882 47.7
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 4.8e-211 738.8 888 48.3
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 1.1e-210 737.6 881 47.4
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 1.1e-210 737.6 883 48.6
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 4.0e-210 735.7 876 47.5
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 4.0e-210 735.7 927 47.2
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 2.0e-209 733.4 876 47.0
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 2.6e-209 733.0 881 47.2
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 9.9e-209 731.1 883 47.9
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 4.9e-208 728.8 876 47.1
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 1.7e-200 703.7 707 53.9
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 3.8e-200 702.6 837 49.2
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.4e-199 700.7 853 47.7
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 2.4e-199 699.9 887 46.1
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 5.4e-199 698.7 877 47.2
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 4.6e-198 695.7 873 46.5
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 2.3e-197 693.3 839 47.6
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 7.4e-196 688.3 665 54.7
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 6.5e-192 675.2 884 45.4
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 1.3e-187 661.0 697 52.4
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 2.0e-185 653.7 621 56.4
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 4.3e-180 636.0 878 44.6
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 3.1e-170 603.2 695 48.8
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 7.2e-167 592.0 549 56.1
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 4.7e-166 589.3 683 49.8
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 2.3e-165 587.0 873 40.8
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 2.3e-149 533.9 745 42.4
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 2.7e-145 520.4 778 41.5
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 8.5e-144 515.4 639 45.9
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 4.2e-143 513.1 894 39.1
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 2.3e-136 490.7 878 36.6
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 4.4e-124 449.9 686 40.1
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 4.3e-119 433.3 748 39.2
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 8.3e-115 419.1 540 44.1
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 2.0e-108 397.9 260 78.1
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 7.3e-103 379.4 803 34.6
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 3.4e-100 370.5 596 38.9
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 5.4e-98 363.2 228 80.7
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 2.3e-96 357.8 888 31.2
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 3.0e-96 357.5 229 79.9
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 8.4e-91 339.3 920 29.6
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 8.4e-91 339.3 920 29.6
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 1.6e-89 335.1 521 39.7
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 4.3e-87 327.0 241 68.9
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 2.9e-83 314.3 729 30.5
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 2.3e-80 304.7 192 80.7
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 3.3e-79 300.8 193 78.8
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 1.1e-74 285.8 187 73.8
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 1.9e-74 285.0 518 36.3
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 4.5e-68 263.8 193 68.9
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 2.2e-67 261.5 355 39.7
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 1.3e-64 252.3 749 29.2
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 3.7e-62 244.2 336 42.3
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 3.4e-60 237.7 189 60.8
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 8.5e-59 233.0 259 51.4
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 8.5e-51 206.5 138 76.8
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.4e-50 205.7 202 51.5
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.7e-49 201.4 212 49.5
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 7.9e-49 199.9 332 35.2
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 3.8e-43 181.0 191 48.7
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 1.5e-42 179.1 143 67.8
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 1.9e-42 178.7 217 46.5
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.3e-38 166.0 174 50.0
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 1.8e-37 162.2 108 71.3
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 1.7e-35 155.6 178 46.1
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 2.2e-35 155.2 223 42.2
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 4.7e-33 147.5 215 41.4
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 7.5e-31 140.2 84 86.9
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.6e-28 132.5 101 64.4
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.2e-27 128.6 216 39.8
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 1.9e-26 125.6 104 71.2
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 2.3e-24 118.6 453 27.6
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 8.8e-24 116.7 110 58.2
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 1.2e-23 116.3 203 36.0
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 2.6e-23 115.2 247 30.0
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 1.7e-22 112.5 111 51.4
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 6.3e-22 110.5 78 65.4
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 1.0e-19 103.2 188 34.6
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 1.9e-18 99.0 171 39.2
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 9.8e-15 86.7 119 39.5
SEGI_15424 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 2.1e-09 68.9 88 42.0
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 5.2e-08 64.3 50 60.0
SHI10296 Sapria himalayana HOM05D000002 ORTHO05D000001 5.8e-07 60.8 74 41.9


User provided reference genes

Program Settings