Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G039600 Manihot esculenta HOM05D007176 ORTHO05D009050 3.0e-148 528.9 352 100.0
Dinv16365 Davidia involucrata HOM05D007176 ORTHO05D009050 8.6e-119 431.0 346 75.4
Nn2g15783 Nelumbo nucifera HOM05D007176 ORTHO05D009050 1.1e-116 424.1 349 80.2
Thecc.05G178200 Theobroma cacao HOM05D007176 ORTHO05D009050 6.8e-116 421.4 347 71.8
FAN02G0922 Fragaria x ananassa HOM05D007176 ORTHO05D009050 4.9e-114 415.2 345 83.2
Duzib106G0399 Durio zibethinus HOM05D007176 ORTHO05D009050 6.4e-114 414.8 347 72.9
RcHm_v2.0_Chr3g0478871 Rosa chinensis HOM05D007176 ORTHO05D009050 8.4e-114 414.5 345 75.4
Cfa020128 Carpinus fangiana HOM05D007176 ORTHO05D009050 1.9e-113 413.3 349 62.8
TAR633G1141 Trochodendron aralioides HOM05D007176 ORTHO05D009050 3.2e-113 412.5 347 82.7
QL07p025011 Quercus lobata HOM05D007176 ORTHO05D009050 4.2e-113 412.1 348 82.2
FvH4_6g21620 Fragaria vesca HOM05D007176 ORTHO05D009050 1.6e-112 410.2 345 82.6
TAR633G0683 Trochodendron aralioides HOM05D007176 ORTHO05D009050 1.6e-112 410.2 347 82.4
Lju124C23T17 Lonicera japonica HOM05D007176 ORTHO05D009050 2.7e-112 409.5 332 85.5
Gohir.A04G053500 Gossypium hirsutum HOM05D007176 ORTHO05D009050 4.6e-112 408.7 352 73.6
FAN14G2546 Fragaria x ananassa HOM05D007176 ORTHO05D009050 1.7e-111 406.8 345 82.0
FAN09G2372 Fragaria x ananassa HOM05D007176 ORTHO05D009050 1.9e-110 403.3 345 81.2
Aa31LG10G13110 Aethionema arabicum HOM05D007176 ORTHO05D009050 2.5e-110 402.9 354 73.7
CiPaw.09G027300 Carya illinoinensis HOM05D007176 ORTHO05D009050 4.8e-109 398.7 346 81.8
FAN05G5781 Fragaria x ananassa HOM05D007176 ORTHO05D009050 6.2e-109 398.3 351 80.9
Hma1.2p1_0645F.1_g194890 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 1.8e-108 396.7 348 80.2
Migut.K00028 Erythranthe guttata HOM05D007176 ORTHO05D009050 2.4e-108 396.4 352 81.0
Potri.006G195800 Populus trichocarpa HOM05D007176 ORTHO05D009050 3.1e-108 396.0 348 82.2
Eucgr.K01865 Eucalyptus grandis HOM05D007176 ORTHO05D009050 5.3e-108 395.2 348 79.6
BcaC07g40246 Brassica carinata HOM05D007176 ORTHO05D009050 7.1e-105 384.8 354 71.2
Prupe.7G084400 Prunus persica HOM05D007176 ORTHO05D009050 4.6e-104 382.1 351 78.9
ECA247G1245 Erigeron canadensis HOM05D007176 ORTHO05D009050 6.6e-103 378.3 349 77.7
A09p51090 Brassica napus HOM05D007176 ORTHO05D009050 1.1e-102 377.5 378 66.9
arahy.Tifrunner.gnm1.ann1.5B5G66 Arachis hypogaea HOM05D007176 ORTHO05D009050 1.5e-102 377.1 359 78.0
Sabra06G0150500 Salix brachista HOM05D007176 ORTHO05D009050 2.5e-102 376.3 351 78.3
EL10Ac3g06857 Beta vulgaris HOM05D007176 ORTHO05D009050 7.4e-102 374.8 343 79.0
Cpa.g.sc85.35 Carica papaya HOM05D007176 ORTHO05D009050 2.1e-101 373.2 346 78.3
HanXRQChr10g0300591 Helianthus annuus HOM05D007176 ORTHO05D009050 3.6e-101 372.5 353 76.8
Lj5g0009846 Lotus japonicus HOM05D007176 ORTHO05D009050 1.1e-100 370.9 352 77.6
GSVIVG01033441001 Vitis vinifera HOM05D007176 ORTHO05D009050 1.4e-100 370.5 322 77.0
arahy.Tifrunner.gnm1.ann1.I5CDLA Arachis hypogaea HOM05D007176 ORTHO05D009050 7.6e-99 364.8 374 74.3
THA.LOC104802720 Tarenaya hassleriana HOM05D007176 ORTHO05D009050 7.6e-99 364.8 354 66.7
CSS0044198 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 6.4e-98 361.7 347 77.5
CANSAT64G0938 Cannabis sativa HOM05D007176 ORTHO05D009050 1.9e-97 360.1 352 74.7
C08p33910 Brassica napus HOM05D007176 ORTHO05D009050 1.6e-96 357.1 354 67.8
Rhsim04G0094400 Rhododendron simsii HOM05D007176 ORTHO05D009050 4.6e-96 355.5 351 74.6
MD12G1053200 Malus domestica HOM05D007176 ORTHO05D009050 7.9e-96 354.8 356 73.6
MBI01_g44281_MAGBIO Magnolia biondii HOM05D007176 ORTHO05D009050 3.3e-94 349.4 331 58.0
PGR142G3952 Punica granatum HOM05D007176 ORTHO05D009050 5.6e-94 348.6 348 74.1
Sc13g0002490 Simmondsia chinensis HOM05D007176 ORTHO05D009050 1.8e-92 343.6 346 66.5
AL5G40300 Arabidopsis lyrata HOM05D007176 ORTHO05D009050 3.1e-92 342.8 354 72.6
MD14G1051600 Malus domestica HOM05D007176 ORTHO05D009050 2.6e-91 339.7 346 64.2
CDE04G3485 Ceratophyllum demersum HOM05D007176 ORTHO05D009050 3.4e-91 339.3 351 72.9
SalBow1G6257 Salvia bowleyana HOM05D007176 ORTHO05D009050 3.4e-91 339.3 360 71.9
CARHR168930 Cardamine hirsuta HOM05D007176 ORTHO05D009050 7.6e-91 338.2 354 65.5
Thhalv10006065m.g Eutrema salsugineum HOM05D007176 ORTHO05D009050 7.6e-91 338.2 354 72.3
TPR.G19346 Trifolium pratense HOM05D007176 ORTHO05D009050 4.9e-90 335.5 378 70.1
Sp5g04340 Schrenkiella parvula HOM05D007176 ORTHO05D009050 3.2e-89 332.8 354 62.1
Haze_20048 Corylus avellana HOM05D007176 ORTHO05D009050 2.7e-88 329.7 381 50.9
Haze_20055 Corylus avellana HOM05D007176 ORTHO05D009050 2.7e-88 329.7 381 50.9
Actinidia17284 Actinidia chinensis HOM05D007176 ORTHO05D009050 1.8e-87 327.0 352 66.5
vmacro22113 Vaccinium macrocarpon HOM05D007176 ORTHO05D009050 2.3e-87 326.6 375 49.6
Carub.0005s2528 Capsella rubella HOM05D007176 ORTHO05D009050 8.7e-87 324.7 354 71.2
CSS0035640 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 5.7e-86 322.0 347 73.5
Os02g0281150 Oryza sativa ssp. japonica HOM05D007176 ORTHO05D009050 9.6e-86 321.2 351 67.8
AT3G58530 Arabidopsis thaliana HOM05D007176 ORTHO05D009050 1.3e-85 320.9 354 69.8
Cc06_g15630 Coffea canephora HOM05D007176 ORTHO05D009050 4.5e-83 312.4 353 70.3
Sopen06g001340 Solanum pennellii HOM05D007176 ORTHO05D009050 1.7e-82 310.5 341 63.9
Peaxi162Scf00258g00925 Petunia axillaris HOM05D007176 ORTHO05D009050 3.8e-82 309.3 347 69.5
COL.COLO4_29390 Corchorus olitorius HOM05D007176 ORTHO05D009050 1.1e-81 307.8 325 64.0
Medtr1g054625 Medicago truncatula HOM05D007176 ORTHO05D009050 1.1e-81 307.8 354 70.1
PGSC0003DMG400029168 Solanum tuberosum HOM05D007176 ORTHO05D009050 4.2e-81 305.8 341 70.7
CAN.G111.5 Capsicum annuum HOM05D007176 ORTHO05D009050 9.3e-81 304.7 344 69.8
Solyc06g005380.3 Solanum lycopersicum HOM05D007176 ORTHO05D009050 1.0e-79 301.2 341 70.1
DCAR_019856 Daucus carota HOM05D007176 ORTHO05D009050 3.9e-79 299.3 327 52.6
Glyma.09G105500 Glycine max HOM05D007176 ORTHO05D009050 5.1e-79 298.9 356 69.9
Atru.BG.213.p Acer truncatum HOM05D007176 ORTHO05D009050 1.5e-78 297.4 342 70.8
Lalb_Chr02g0153821 Lupinus albus HOM05D007176 ORTHO05D009050 1.5e-78 297.4 352 68.8
Hma1.2p1_0645F.1_g194900 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 5.7e-78 295.4 290 79.7
Gohir.D04G094700 Gossypium hirsutum HOM05D007176 ORTHO05D009050 7.4e-78 295.0 276 72.5
Ca_03573_v3 Cicer arietinum L. HOM05D007176 ORTHO05D009050 9.7e-78 294.7 357 68.1
AUR62032747 Chenopodium quinoa HOM05D007176 ORTHO05D009050 2.8e-77 293.1 329 70.8
Lsat_1_v5_gn_9_26900 Lactuca sativa HOM05D007176 ORTHO05D009050 6.9e-76 288.5 343 55.4
BolC8t50987H Brassica oleracea HOM05D000032 ORTHO05D001620 4.5e-75 285.8 276 72.5
Gorai.009G392400 Gossypium raimondii HOM05D007176 ORTHO05D009050 1.0e-74 284.6 324 66.0
PSO541G4948 Papaver somniferum HOM05D007176 ORTHO05D009050 6.5e-74 282.0 290 74.8
Ah.13g075580 Amaranthus hybridus HOM05D007176 ORTHO05D009050 2.7e-72 276.6 289 77.5
Aqoxy279s002 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 1.4e-71 274.2 350 66.9
Aqoxy2G00051 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 1.4e-71 274.2 350 66.9
Nitab4.5_0008255g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 6.7e-71 271.9 345 45.2
HPP92_010126 Vanilla planifolia HOM05D007176 ORTHO05D009050 9.1e-68 261.5 290 74.5
Zm00001eb237210 Zea mays HOM05D007176 ORTHO05D009050 1.0e-66 258.1 344 63.4
PSO675G7508 Papaver somniferum HOM05D007176 ORTHO05D009050 2.2e-66 256.9 290 65.2
BraA09t40553Z Brassica rapa HOM05D000032 ORTHO05D001620 8.8e-63 245.0 277 65.3
BcaC02g10014 Brassica carinata HOM05D007176 ORTHO05D009050 4.4e-62 242.7 296 70.6
SEGI_09769 Sequoiadendron giganteum HOM05D007176 ORTHO05D009050 2.8e-61 240.0 289 72.7
VMungo0720G0788 Vigna mungo HOM05D007176 ORTHO05D009050 1.8e-60 237.3 402 43.8
BolC4t24963H Brassica oleracea HOM05D000032 ORTHO05D001620 6.1e-56 222.2 276 71.7
C04p33960 Brassica napus HOM05D007176 ORTHO05D009050 1.1e-54 218.0 276 71.7
SMO118G0524 Selaginella moellendorffii HOM05D007176 ORTHO05D009050 3.3e-54 216.5 339 54.3
unitig_736.g22301 Utricularia gibba HOM05D007176 ORTHO05D009050 8.2e-53 211.8 394 55.8
SGA_v2.0_scaffold274G46490 Striga asiatica HOM05D007176 ORTHO05D009050 1.4e-52 211.1 137 74.5
Ciclev10012430m.g Citrus clementina HOM05D007176 ORTHO05D009050 4.5e-51 206.1 147 66.7
Nitab4.5_0000009g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 7.7e-51 205.3 415 34.7
Psat6g088000 Pisum sativum HOM05D007176 ORTHO05D009050 2.2e-50 203.8 297 66.7
Pp3c23_2930 Physcomitrium patens HOM05D007176 ORTHO05D009050 6.5e-50 202.2 350 50.0
Atru.chr8.1185 Acer truncatum HOM05D007176 ORTHO05D009050 9.8e-46 188.3 258 71.3
Phvul.007G261900 Phaseolus vulgaris HOM05D007176 ORTHO05D009050 2.7e-43 180.3 294 64.3
AagrBONN_evm.TU.Sc2ySwM_228.1251 Anthoceros agrestis HOM05D007176 ORTHO05D009050 3.5e-43 179.9 347 52.2
Hund24823 Selenicereus undatus HOM05D007176 ORTHO05D009050 5.9e-43 179.1 122 70.5
arahy.Tifrunner.gnm1.ann1.0S64XP Arachis hypogaea HOM05D007176 ORTHO05D009050 3.7e-37 159.8 273 44.3
Hund24819 Selenicereus undatus HOM05D007176 ORTHO05D001610 1.4e-31 141.4 128 59.4
HanXRQChr05g0140621 Helianthus annuus HOM05D007176 ORTHO05D009050 6.8e-31 139.0 107 66.4
HanXRQChr10g0316231 Helianthus annuus HOM05D007176 ORTHO05D009050 6.8e-31 139.0 107 66.4
A04p02540 Brassica napus HOM05D000032 ORTHO05D001620 8.9e-31 138.7 292 38.4
ATR0001G043 Amborella trichopoda HOM05D007176 ORTHO05D009050 2.0e-27 127.5 87 71.3
Mapoly0209s0007 Marchantia polymorpha HOM05D007176 ORTHO05D009050 1.3e-26 124.8 131 50.4
AUR62015309 Chenopodium quinoa HOM05D007176 ORTHO05D009050 1.5e-22 111.3 110 51.8
PRCOL_00005880 Prasinoderma coloniale HOM05D007176 ORTHO05D009050 3.4e-22 110.2 299 27.4
HanXRQChr10g0281201 Helianthus annuus HOM05D005998 ORTHO05D007664 8.1e-08 62.4 84 41.7


User provided reference genes

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