Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 0.0e+00 1457.2 755 100.0
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 0.0e+00 1108.6 758 76.0
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 0.0e+00 1108.2 765 74.9
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 0.0e+00 1088.6 758 75.1
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 0.0e+00 1086.2 756 74.6
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 0.0e+00 1077.4 762 73.6
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 0.0e+00 1075.8 759 73.8
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 5.2e-312 1074.7 762 73.8
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 5.2e-312 1074.3 756 73.1
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 5.2e-312 1073.5 762 73.5
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 1.5e-311 1072.4 758 72.3
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 8.4e-305 1050.0 758 72.2
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.9e-301 1038.9 759 72.1
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 2.5e-301 1038.5 761 70.8
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 5.7e-301 1037.3 722 75.6
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 3.4e-298 1028.1 817 67.4
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 1.7e-297 1025.8 758 70.8
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 8.4e-297 1023.5 786 69.0
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 8.4e-297 1023.5 757 71.6
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 2.5e-296 1021.9 758 70.1
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 1.2e-295 1019.6 758 69.4
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 6.1e-295 1017.3 758 69.3
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 5.1e-294 1014.2 758 69.0
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 1.5e-293 1012.7 758 70.8
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 1.3e-292 1009.6 764 70.7
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 3.7e-292 1008.1 756 68.9
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 6.3e-292 1007.3 757 70.5
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 8.2e-292 1006.9 794 68.1
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 1.1e-291 1006.5 760 70.1
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 4.2e-288 994.6 793 67.3
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 1.6e-287 992.6 761 67.9
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 6.7e-286 987.3 756 67.2
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 1.1e-285 986.5 757 68.4
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 4.3e-285 984.6 757 67.8
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 8.2e-284 980.3 758 68.5
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 1.1e-283 979.9 758 67.4
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 8.5e-281 970.3 758 67.4
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 2.5e-280 968.8 782 65.6
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 1.6e-279 966.1 757 65.7
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 2.7e-279 965.3 761 67.0
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 1.0e-278 963.4 757 66.3
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.8e-278 962.6 830 63.9
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 1.8e-278 962.6 752 67.3
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 8.2e-276 953.7 760 65.7
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 4.1e-275 951.4 759 65.5
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 9.1e-275 950.3 784 63.5
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 5.9e-274 947.6 762 65.9
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 8.5e-273 943.7 778 65.7
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 9.4e-272 940.3 755 66.2
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 2.8e-268 928.7 754 64.9
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 3.7e-268 928.3 771 64.1
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.4e-267 926.4 793 62.3
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 1.3e-265 919.8 758 64.4
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 1.5e-264 916.4 756 64.3
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 4.2e-264 914.8 736 66.6
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 9.4e-264 913.7 756 63.9
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 3.0e-262 908.7 754 63.3
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 3.4e-261 905.2 755 63.7
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 1.7e-260 902.9 752 62.0
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 1.4e-259 899.8 758 63.7
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 3.5e-258 895.2 754 61.0
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 5.9e-258 894.4 776 61.6
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 1.1e-256 890.2 927 56.4
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 1.2e-255 886.7 757 61.3
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 1.8e-254 882.9 755 61.3
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 1.8e-254 882.9 702 66.4
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 3.7e-252 875.2 778 60.9
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 1.4e-251 873.2 787 60.1
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 7.3e-248 860.9 752 60.6
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 1.0e-246 857.1 756 62.6
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 6.8e-246 854.4 768 59.2
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 7.5e-245 850.9 756 58.9
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 2.2e-244 849.4 756 62.4
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 4.1e-243 845.1 767 58.7
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 9.5e-240 833.9 701 61.5
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 2.2e-236 822.8 780 55.9
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 6.6e-233 811.2 751 57.3
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 8.6e-233 810.8 741 57.4
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 1.2e-231 807.0 751 56.5
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 1.6e-231 806.6 757 56.9
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 6.2e-231 804.7 739 57.1
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 3.1e-230 802.4 756 56.5
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 2.6e-229 799.3 741 56.4
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 4.4e-229 798.5 651 65.9
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 6.0e-226 788.1 777 55.2
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 1.2e-221 773.9 756 55.6
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 1.7e-217 760.0 787 53.5
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 2.3e-217 759.6 761 56.0
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 2.6e-213 746.1 755 53.8
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 1.6e-210 736.9 732 52.3
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 2.4e-203 713.0 615 63.4
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 9.6e-200 701.0 758 52.2
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 7.9e-194 681.4 434 78.1
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 1.4e-190 670.6 705 53.2
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 5.3e-190 668.7 765 50.5
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 5.3e-190 668.7 765 50.5
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 5.3e-190 668.7 765 50.5
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 1.1e-187 661.0 511 71.2
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 4.2e-187 659.1 719 51.5
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 3.1e-182 642.9 756 47.4
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 1.6e-178 630.6 614 56.0
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 7.9e-178 628.2 617 59.0
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 1.2e-173 614.4 545 61.3
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 2.1e-170 603.6 839 43.6
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 3.2e-163 579.7 397 72.8
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 3.2e-163 579.7 500 65.0
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 2.0e-157 560.5 441 63.5
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 7.7e-157 558.5 585 49.6
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 1.9e-155 553.9 736 42.8
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 9.7e-152 541.6 549 55.4
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 6.4e-119 432.6 572 45.3
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 2.0e-117 427.6 260 80.0
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 6.2e-114 416.0 536 48.1
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 5.8e-88 329.7 364 51.1
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 3.9e-84 317.0 239 68.6
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 6.0e-77 293.1 194 71.1
TAR623G0223 Trochodendron aralioides HOM05D004031 ORTHO05D006678 3.5e-69 267.3 173 75.7
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.9e-54 218.4 143 70.6
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 1.4e-52 212.2 143 69.2
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 2.6e-51 208.0 142 69.0
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 1.5e-48 198.7 142 66.2
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.3e-47 195.7 118 80.5
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 6.5e-47 193.4 129 69.0
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 7.7e-40 169.9 99 82.8
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.9e-38 165.2 114 78.1
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 2.8e-34 151.4 172 52.3
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-29 134.8 157 42.0
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 1.8e-28 132.1 262 32.8
BcaB06g25555 Brassica carinata HOM05D004031 ORTHO05D006678 1.2e-27 129.4 100 58.0
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 2.0e-27 128.6 771 21.8
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 7.5e-27 126.7 74 79.7
Aa31LG3G5510 Aethionema arabicum HOM05D004031 ORTHO05D006678 1.7e-26 125.6 91 63.7
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 8.6e-23 113.2 90 56.7
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 8.6e-23 113.2 90 56.7
Cre08.g370250 Chlamydomonas reinhardtii HOM05D004031 ORTHO05D006678 4.7e-21 107.5 543 23.0
CBR_g32659 Chara braunii HOM05D001409 ORTHO05D001511 3.0e-20 104.8 149 39.6
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 3.1e-17 94.7 404 27.2
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 1.2e-13 82.8 58 69.0
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 4.0e-12 77.8 47 78.7
SHI31750 Sapria himalayana HOM05D003430 ORTHO05D014065 2.7e-08 65.1 70 52.9
Hund07844 Selenicereus undatus HOM05D004031 ORTHO05D006678 3.5e-08 64.7 65 52.3


User provided reference genes

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