Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G037701 Manihot esculenta HOM05D005910 ORTHO05D007088 5.4e-99 364.4 193 100.0
Gohir.D09G124900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 1.6e-90 336.3 195 90.3
Gorai.006G143800 Gossypium raimondii HOM05D005910 ORTHO05D007088 1.6e-90 336.3 195 90.3
Thecc.05G175100 Theobroma cacao HOM05D005910 ORTHO05D007088 1.6e-90 336.3 195 91.3
Manes.08G042400 Manihot esculenta HOM05D005910 ORTHO05D007088 2.1e-90 335.9 193 93.3
Gohir.A09G128900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 6.0e-90 334.3 195 89.7
CANSAT64G0849 Cannabis sativa HOM05D005910 ORTHO05D007088 1.0e-89 333.6 194 91.8
Duzib106G1486 Durio zibethinus HOM05D005910 ORTHO05D007088 1.0e-89 333.6 195 89.7
TWI77G0716 Tripterygium wilfordii HOM05D005910 ORTHO05D007088 3.0e-89 332.0 193 89.1
ClCG10G017690 Citrullus lanatus HOM05D005910 ORTHO05D007088 5.1e-89 331.3 193 89.1
FAN02G0902 Fragaria x ananassa HOM05D005910 ORTHO05D007088 8.7e-89 330.5 195 90.8
FAN05G0623 Fragaria x ananassa HOM05D005910 ORTHO05D007088 1.5e-88 329.7 195 90.8
FAN14G5103 Fragaria x ananassa HOM05D005910 ORTHO05D007088 1.5e-88 329.7 195 90.8
FvH4_6g21840 Fragaria vesca HOM05D005910 ORTHO05D007088 3.3e-88 328.6 195 90.3
RcHm_v2.0_Chr3g0479191 Rosa chinensis HOM05D005910 ORTHO05D007088 3.3e-88 328.6 194 90.2
Atru.chr8.1156 Acer truncatum HOM05D005910 ORTHO05D007088 4.3e-88 328.2 195 90.8
MELO3C009607.2 Cucumis melo HOM05D005910 ORTHO05D007088 7.4e-88 327.4 193 86.5
PGR142G2565 Punica granatum HOM05D005910 ORTHO05D007088 1.6e-87 326.2 195 87.7
CiPaw.09G028200 Carya illinoinensis HOM05D005910 ORTHO05D007088 2.8e-87 325.5 193 88.1
COL.COLO4_29362 Corchorus olitorius HOM05D005910 ORTHO05D007088 2.8e-87 325.5 195 87.7
CiPaw.10G025100 Carya illinoinensis HOM05D005910 ORTHO05D007088 2.4e-86 322.4 193 88.6
Prupe.7G082200 Prunus persica HOM05D005910 ORTHO05D007088 4.0e-86 321.6 193 87.6
Cpa.g.sc85.46 Carica papaya HOM05D005910 ORTHO05D007088 3.4e-85 318.5 195 89.2
Glyma.16G043900 Glycine max HOM05D005910 ORTHO05D007088 5.8e-85 317.8 194 86.1
MD12G1054500 Malus domestica HOM05D005910 ORTHO05D007088 5.8e-85 317.8 196 86.2
Dinv16345 Davidia involucrata HOM05D005910 ORTHO05D007088 7.6e-85 317.4 195 87.2
Psat3g091080 Pisum sativum HOM05D005910 ORTHO05D007088 7.6e-85 317.4 193 87.0
BcaC09g48209 Brassica carinata HOM05D005910 ORTHO05D007088 1.0e-84 317.0 193 87.6
BraA01t04144Z Brassica rapa HOM05D005910 ORTHO05D007088 1.0e-84 317.0 193 87.0
Thhalv10022159m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 1.3e-84 316.6 194 88.1
Medtr7g085050 Medicago truncatula HOM05D005910 ORTHO05D007088 1.3e-84 316.6 193 86.5
CSS0007798 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 2.2e-84 315.8 195 86.2
Lalb_Chr22g0359441 Lupinus albus HOM05D005910 ORTHO05D007088 2.2e-84 315.8 193 85.5
TPR.G5912 Trifolium pratense HOM05D005910 ORTHO05D007088 2.2e-84 315.8 193 86.5
Sed0016712 Sechium edule HOM05D005910 ORTHO05D007088 2.9e-84 315.5 195 85.6
BolC1t05270H Brassica oleracea HOM05D005910 ORTHO05D007088 3.8e-84 315.1 193 86.5
Ca_08246_v3 Cicer arietinum L. HOM05D005910 ORTHO05D007088 3.8e-84 315.1 193 86.0
Phvul.001G097100 Phaseolus vulgaris HOM05D005910 ORTHO05D007088 3.8e-84 315.1 193 86.0
Lj1g0011929 Lotus japonicus HOM05D005910 ORTHO05D007088 4.9e-84 314.7 193 86.0
THA.LOC104799285 Tarenaya hassleriana HOM05D005910 ORTHO05D007088 4.9e-84 314.7 195 86.7
VMungo1383G3424 Vigna mungo HOM05D005910 ORTHO05D007088 4.9e-84 314.7 193 85.5
Carub.0003s1137 Capsella rubella HOM05D005910 ORTHO05D007088 8.4e-84 313.9 194 87.6
CARHR206550 Cardamine hirsuta HOM05D005910 ORTHO05D007088 1.1e-83 313.5 195 87.7
Glyma.19G108300 Glycine max HOM05D005910 ORTHO05D007088 1.4e-83 313.2 193 85.0
Sp3g10260 Schrenkiella parvula HOM05D005910 ORTHO05D007088 1.4e-83 313.2 193 87.0
QL07p024560 Quercus lobata HOM05D005910 ORTHO05D007088 2.5e-83 312.4 204 82.8
AL3G23640 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 4.2e-83 311.6 194 87.1
AL6G16750 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 4.2e-83 311.6 195 87.2
Carub.0006s0554 Capsella rubella HOM05D005910 ORTHO05D007088 5.5e-83 311.2 195 86.2
DCAR_019862 Daucus carota HOM05D005910 ORTHO05D007088 5.5e-83 311.2 188 86.7
AT5G06660 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 7.1e-83 310.8 195 87.2
Aa31LG3G5420 Aethionema arabicum HOM05D005910 ORTHO05D007088 1.2e-82 310.1 194 86.6
AT3G12030 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 1.2e-82 310.1 194 86.6
Hma1.2p1_0124F.1_g058350 Hydrangea macrophylla HOM05D005910 ORTHO05D007088 1.2e-82 310.1 189 86.8
Lalb_Chr14g0364291 Lupinus albus HOM05D005910 ORTHO05D007088 1.6e-82 309.7 193 84.5
Actinidia17287 Actinidia chinensis HOM05D005910 ORTHO05D007088 2.1e-82 309.3 193 83.4
BcaB04g21099 Brassica carinata HOM05D005910 ORTHO05D007088 2.1e-82 309.3 195 85.6
Sp6g36210 Schrenkiella parvula HOM05D005910 ORTHO05D007088 2.7e-82 308.9 195 86.7
CARHR086590 Cardamine hirsuta HOM05D005910 ORTHO05D007088 3.5e-82 308.5 194 86.1
Thhalv10016091m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 6.1e-82 307.8 189 87.3
Actinidia38597 Actinidia chinensis HOM05D005910 ORTHO05D007088 3.0e-81 305.4 193 82.9
GSVIVG01033465001 Vitis vinifera HOM05D005910 ORTHO05D007088 5.1e-81 304.7 194 84.0
CsaV3_3G038630 Cucumis sativus L. HOM05D005910 ORTHO05D007088 1.1e-80 303.5 178 86.5
Oeu057587.1 Olea europaea HOM05D005910 ORTHO05D007088 4.3e-80 301.6 189 84.7
Cc06_g15530 Coffea canephora HOM05D005910 ORTHO05D007088 5.7e-80 301.2 195 85.6
Solyc10g079000.1 Solanum lycopersicum HOM05D005910 ORTHO05D007088 7.4e-80 300.8 195 82.6
Sopen10g029620 Solanum pennellii HOM05D005910 ORTHO05D007088 7.4e-80 300.8 195 82.6
PGSC0003DMG400011451 Solanum tuberosum HOM05D005910 ORTHO05D007088 7.4e-80 300.8 195 82.6
Haze_20022 Corylus avellana HOM05D005910 ORTHO05D007088 9.7e-80 300.4 194 83.0
Haze_20025 Corylus avellana HOM05D005910 ORTHO05D007088 9.7e-80 300.4 194 83.0
SGA_v2.0_scaffold69G23042 Striga asiatica HOM05D005910 ORTHO05D007088 3.7e-79 298.5 192 82.8
Lsat_1_v5_gn_2_56160 Lactuca sativa HOM05D005910 ORTHO05D007088 8.2e-79 297.4 188 85.1
Rhsim04G0093900 Rhododendron simsii HOM05D005910 ORTHO05D007088 8.2e-79 297.4 198 81.3
Potri.016G060300 Populus trichocarpa HOM05D005910 ORTHO05D007088 1.8e-78 296.2 195 82.6
Aqoxy7G00427 Aquilegia oxysepala HOM05D005910 ORTHO05D007088 3.1e-78 295.4 190 83.2
PSO478G2464 Papaver somniferum HOM05D005910 ORTHO05D007088 3.1e-78 295.4 188 81.4
Sed0026900 Sechium edule HOM05D005910 ORTHO05D007088 3.1e-78 295.4 193 80.3
Rhsim04G0095300 Rhododendron simsii HOM05D005910 ORTHO05D007088 4.1e-78 295.0 198 80.8
MSTRG.19925 Avicennia marina HOM05D005910 ORTHO05D007088 5.9e-77 291.2 198 79.3
CAN.G960.19 Capsicum annuum HOM05D005910 ORTHO05D007088 5.9e-77 291.2 194 80.9
Sc13g0002410 Simmondsia chinensis HOM05D005910 ORTHO05D007088 5.9e-77 291.2 194 80.9
TAR623G1561 Trochodendron aralioides HOM05D005910 ORTHO05D007088 5.9e-77 291.2 193 82.4
AUR62012008 Chenopodium quinoa HOM05D005910 ORTHO05D007088 7.7e-77 290.8 189 81.0
AUR62015329 Chenopodium quinoa HOM05D005910 ORTHO05D007088 1.7e-76 289.7 193 80.3
Migut.J01866 Erythranthe guttata HOM05D005910 ORTHO05D007088 2.2e-76 289.3 192 81.2
Peaxi162Scf00463g00044 Petunia axillaris HOM05D005910 ORTHO05D007088 6.5e-76 287.7 187 81.8
TAR369G0766 Trochodendron aralioides HOM05D005910 ORTHO05D007088 1.1e-75 287.0 193 81.3
Cfa020141 Carpinus fangiana HOM05D005910 ORTHO05D007088 2.5e-75 285.8 194 78.9
Nitab4.5_0009361g0020 Nicotiana tabacum HOM05D005910 ORTHO05D007088 5.5e-75 284.6 193 78.8
Nitab4.5_0000009g0230 Nicotiana tabacum HOM05D005910 ORTHO05D007088 1.6e-74 283.1 193 78.8
unitig_26.g10040 Utricularia gibba HOM05D005910 ORTHO05D007088 1.6e-74 283.1 195 76.9
EL10Ac3g06882 Beta vulgaris HOM05D005910 ORTHO05D007088 3.9e-73 278.5 189 76.2
SHI31753 Sapria himalayana HOM05D005910 ORTHO05D007088 1.3e-71 273.5 184 81.0
HPP92_021275 Vanilla planifolia HOM05D005910 ORTHO05D007088 8.2e-71 270.8 197 72.1
ECA238G3575 Erigeron canadensis HOM05D005910 ORTHO05D007088 1.4e-70 270.0 195 76.9
HanXRQChr14g0438251 Helianthus annuus HOM05D005910 ORTHO05D007088 4.1e-70 268.5 196 77.6
Lsat_1_v5_gn_6_36581 Lactuca sativa HOM05D005910 ORTHO05D007088 6.9e-70 267.7 181 77.3
vmacro22120 Vaccinium macrocarpon HOM05D005910 ORTHO05D007088 2.6e-69 265.8 174 81.0
ATR0598G129 Amborella trichopoda HOM05D005910 ORTHO05D007088 7.7e-69 264.2 187 75.9
Pp3c21_11350 Physcomitrium patens HOM05D005910 ORTHO05D007088 8.5e-68 260.8 187 71.1
HanXRQChr03g0075461 Helianthus annuus HOM05D005910 ORTHO05D007088 7.9e-66 254.2 188 73.9
Mapoly0107s0023 Marchantia polymorpha HOM05D005910 ORTHO05D007088 7.4e-64 247.7 184 70.1
AagrBONN_evm.TU.Sc2ySwM_117.1513 Anthoceros agrestis HOM05D005910 ORTHO05D007088 2.8e-63 245.7 189 68.3
Zm00001eb055560 Zea mays HOM05D005910 ORTHO05D007088 3.5e-61 238.8 196 65.8
Zm00001eb215980 Zea mays HOM05D005910 ORTHO05D007088 3.5e-61 238.8 198 64.1
Ciclev10013918m.g Citrus clementina HOM05D005910 ORTHO05D007088 1.0e-60 237.3 136 92.6
Os03g0721400 Oryza sativa ssp. japonica HOM05D005910 ORTHO05D007088 5.0e-60 235.0 206 62.1
Dinv24042 Davidia involucrata HOM05D005910 ORTHO05D007088 2.5e-59 232.6 195 69.2
Lj1P1133T16 Lonicera japonica HOM05D005910 ORTHO05D007088 3.6e-58 228.8 136 87.5
SMO367G0437 Selaginella moellendorffii HOM05D005910 ORTHO05D007088 3.6e-58 228.8 184 66.8
Sabra16G0063200 Salix brachista HOM05D005910 ORTHO05D007088 1.4e-57 226.9 135 86.7
CBR_g49549 Chara braunii HOM05D005910 ORTHO05D007088 1.5e-56 223.4 183 60.7
CSS0031188 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 4.1e-54 215.3 192 64.6
CSS0042896 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 4.7e-50 201.8 190 62.6
SEGI_08450 Sequoiadendron giganteum HOM05D005910 ORTHO05D007088 3.4e-48 195.7 167 67.1
CSS0024230 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 3.6e-42 175.6 190 54.7
MD14G1053500 Malus domestica HOM05D005910 ORTHO05D007088 1.4e-41 173.7 116 80.2
Actinidia38594 Actinidia chinensis HOM05D005910 ORTHO05D007088 6.8e-41 171.4 126 76.2
MD11G1118600 Malus domestica HOM05D005910 ORTHO05D007088 4.4e-40 168.7 123 74.8
DCAR_009688 Daucus carota HOM05D005910 ORTHO05D007088 8.3e-39 164.5 101 79.2
Haze_26182 Corylus avellana HOM05D005910 ORTHO05D007088 2.8e-34 149.4 164 45.1
MD03G1239200 Malus domestica HOM05D005910 ORTHO05D007088 3.0e-33 146.0 136 64.0
QL03p020127 Quercus lobata HOM05D005910 ORTHO05D007088 2.8e-31 139.4 90 81.1
MD00G1019800 Malus domestica HOM05D005910 ORTHO05D007088 3.7e-31 139.0 93 75.3
QL07p006238 Quercus lobata HOM05D005910 ORTHO05D007088 4.6e-29 132.1 106 68.9
Glyma.07G000600 Glycine max HOM05D005910 ORTHO05D007088 1.1e-22 110.9 73 83.6
CDE06G1328 Ceratophyllum demersum HOM05D005910 ORTHO05D007088 1.2e-21 107.5 82 70.7
PRCOL_00005630 Prasinoderma coloniale HOM05D005910 ORTHO05D007088 8.1e-18 94.7 171 33.3
Sabra08G0162900 Salix brachista HOM05D003359 ORTHO05D007088 8.9e-17 91.3 46 89.1
AUR62043130 Chenopodium quinoa HOM05D005910 ORTHO05D007088 4.4e-16 89.0 77 68.8
Cre03.g182900 Chlamydomonas reinhardtii HOM05D005910 ORTHO05D007088 1.6e-13 80.5 160 31.2
HanXRQChr13g0398341 Helianthus annuus HOM05D005910 ORTHO05D007088 5.6e-11 72.0 39 82.1
SGA_v2.0_scaffold131G34402 Striga asiatica HOM05D005910 ORTHO05D007088 3.2e-06 56.2 54 66.7
SGA_v2.0_scaffold472G52090 Striga asiatica HOM05D005910 ORTHO05D007088 5.4e-06 55.5 54 66.7


User provided reference genes

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