Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G035400 Manihot esculenta HOM05D007306 ORTHO05D009112 5.0e-64 247.7 131 100.0
Manes.08G044500 Manihot esculenta HOM05D007306 ORTHO05D009112 5.1e-32 141.4 157 63.1
Potri.016G045700 Populus trichocarpa HOM05D007306 ORTHO05D009112 1.9e-26 122.9 144 54.2
Potri.006G192500 Populus trichocarpa HOM05D007306 ORTHO05D009112 3.5e-25 118.6 145 53.8
Gorai.002G224300 Gossypium raimondii HOM05D007306 ORTHO05D009112 1.0e-24 117.1 145 49.7
Gohir.A01G191300 Gossypium hirsutum HOM05D007306 ORTHO05D009112 1.3e-24 116.7 155 49.0
Thecc.05G171400 Theobroma cacao HOM05D007306 ORTHO05D009112 1.3e-24 116.7 153 52.3
QL07p023738 Quercus lobata HOM05D007306 ORTHO05D009112 1.8e-24 116.3 137 53.3
Duzib093G0428 Durio zibethinus HOM05D007306 ORTHO05D009112 3.9e-24 115.2 152 52.6
Glyma.03G144700 Glycine max HOM05D007306 ORTHO05D009112 6.7e-24 114.4 141 50.4
Gohir.D01G178600 Gossypium hirsutum HOM05D007306 ORTHO05D009112 6.7e-24 114.4 145 49.0
TWI74G1393 Tripterygium wilfordii HOM05D007306 ORTHO05D009112 6.7e-24 114.4 130 57.7
arahy.Tifrunner.gnm1.ann1.T0JWFY Arachis hypogaea HOM05D007306 ORTHO05D009112 1.5e-23 113.2 140 49.3
COL.COLO4_33982 Corchorus olitorius HOM05D007306 ORTHO05D009112 2.5e-23 112.5 142 49.3
Prupe.7G077000 Prunus persica HOM05D007306 ORTHO05D009112 2.5e-23 112.5 139 51.8
Atru.chr8.1112 Acer truncatum HOM05D007306 ORTHO05D009112 3.3e-23 112.1 136 52.2
arahy.Tifrunner.gnm1.ann1.I9AM74 Arachis hypogaea HOM05D007306 ORTHO05D009112 5.6e-23 111.3 140 48.6
Nn2g15686 Nelumbo nucifera HOM05D007306 ORTHO05D009112 5.6e-23 111.3 136 52.2
Dinv14300 Davidia involucrata HOM05D007306 ORTHO05D009112 7.4e-23 110.9 136 50.7
Aqoxy1G00127 Aquilegia oxysepala HOM05D007306 ORTHO05D009112 1.3e-22 110.2 140 50.7
MD12G1057100 Malus domestica HOM05D007306 ORTHO05D009112 1.6e-22 109.8 151 48.3
Sed0004413 Sechium edule HOM05D007306 ORTHO05D009112 2.1e-22 109.4 129 49.6
Nitab4.5_0001137g0060 Nicotiana tabacum HOM05D007306 ORTHO05D009112 3.7e-22 108.6 138 49.3
Peaxi162Scf00258g00720 Petunia axillaris HOM05D007306 ORTHO05D009112 3.7e-22 108.6 145 49.0
Psat3g068560 Pisum sativum HOM05D007306 ORTHO05D009112 4.8e-22 108.2 125 54.4
Migut.J01836 Erythranthe guttata HOM05D007306 ORTHO05D009112 1.1e-21 107.1 134 49.3
Phvul.001G142300 Phaseolus vulgaris HOM05D007306 ORTHO05D009112 1.4e-21 106.7 122 52.5
TAR623G0307 Trochodendron aralioides HOM05D007306 ORTHO05D009112 1.4e-21 106.7 135 52.6
FvH4_6g22320 Fragaria vesca HOM05D007306 ORTHO05D009112 1.8e-21 106.3 143 49.7
CANSAT64G1677 Cannabis sativa HOM05D007306 ORTHO05D009112 2.4e-21 105.9 136 52.9
Lj1g0014955 Lotus japonicus HOM05D007306 ORTHO05D009112 2.4e-21 105.9 126 50.0
TPR.G22157 Trifolium pratense HOM05D007306 ORTHO05D009112 2.4e-21 105.9 138 50.7
Hma1.2p1_0386F.1_g141880 Hydrangea macrophylla HOM05D007306 ORTHO05D009112 3.1e-21 105.5 132 51.5
Ciclev10013031m.g Citrus clementina HOM05D007306 ORTHO05D009112 4.0e-21 105.1 141 50.4
MD14G1057700 Malus domestica HOM05D007306 ORTHO05D009112 4.0e-21 105.1 140 49.3
VMungo1383G3094 Vigna mungo HOM05D007306 ORTHO05D009112 4.0e-21 105.1 120 51.7
FAN05G3567 Fragaria x ananassa HOM05D007306 ORTHO05D009112 5.3e-21 104.8 144 50.7
Nitab4.5_0007619g0010 Nicotiana tabacum HOM05D007306 ORTHO05D009112 9.0e-21 104.0 142 47.2
CiPaw.09G030300 Carya illinoinensis HOM05D007306 ORTHO05D009112 1.2e-20 103.6 136 52.2
FAN14G0362 Fragaria x ananassa HOM05D007306 ORTHO05D009112 1.5e-20 103.2 144 50.0
RcHm_v2.0_Chr3g0479681 Rosa chinensis HOM05D007306 ORTHO05D009112 1.5e-20 103.2 136 50.0
vmacro07907 Vaccinium macrocarpon HOM05D007306 ORTHO05D009112 2.6e-20 102.4 130 50.8
PGR004G2053 Punica granatum HOM05D007306 ORTHO05D009112 3.4e-20 102.1 139 46.0
Cfa020165 Carpinus fangiana HOM05D007306 ORTHO05D009112 4.5e-20 101.7 139 48.9
FAN09G2453 Fragaria x ananassa HOM05D007306 ORTHO05D009112 4.5e-20 101.7 138 48.6
Solyc03g120950.3 Solanum lycopersicum HOM05D007306 ORTHO05D009112 7.6e-20 100.9 118 50.8
Sopen03g039780 Solanum pennellii HOM05D007306 ORTHO05D009112 7.6e-20 100.9 118 50.8
Actinidia32393 Actinidia chinensis HOM05D007306 ORTHO05D009112 1.3e-19 100.1 132 48.5
ClCG10G017530 Citrullus lanatus HOM05D007306 ORTHO05D009112 1.3e-19 100.1 129 48.1
CsaV3_3G038820 Cucumis sativus L. HOM05D007306 ORTHO05D009112 1.7e-19 99.8 131 45.8
PGSC0003DMG400002614 Solanum tuberosum HOM05D007306 ORTHO05D009112 1.7e-19 99.8 118 50.0
CAN.G1143.4 Capsicum annuum HOM05D007306 ORTHO05D009112 2.2e-19 99.4 131 49.6
MELO3C009626.2 Cucumis melo HOM05D007306 ORTHO05D009112 2.2e-19 99.4 130 46.9
SalBow6G0438 Salvia bowleyana HOM05D007306 ORTHO05D009112 2.9e-19 99.0 125 47.2
SalBow6G2293 Salvia bowleyana HOM05D007306 ORTHO05D009112 2.9e-19 99.0 125 47.2
Sabra16G0049700 Salix brachista HOM05D007306 ORTHO05D009112 3.8e-19 98.6 86 68.6
Cpa.g.sc85.66 Carica papaya HOM05D007306 ORTHO05D009112 6.5e-19 97.8 130 48.5
CiPaw.10G026400 Carya illinoinensis HOM05D007306 ORTHO05D009112 6.5e-19 97.8 135 48.9
Phvul.007G259800 Phaseolus vulgaris HOM05D007306 ORTHO05D009112 6.5e-19 97.8 128 46.1
FAN02G3291 Fragaria x ananassa HOM05D007306 ORTHO05D009112 1.1e-18 97.1 138 47.1
Medtr7g093220 Medicago truncatula HOM05D007306 ORTHO05D009112 1.1e-18 97.1 123 49.6
CARHR137170 Cardamine hirsuta HOM05D007306 ORTHO05D009112 1.9e-18 96.3 127 52.0
Duzib106G0602 Durio zibethinus HOM05D007306 ORTHO05D009112 1.9e-18 96.3 142 45.1
AL4G40480 Arabidopsis lyrata HOM05D007306 ORTHO05D009112 3.2e-18 95.5 125 50.4
Rhsim03G0005900 Rhododendron simsii HOM05D007306 ORTHO05D009112 3.2e-18 95.5 126 50.0
Lalb_Chr18g0047871 Lupinus albus HOM05D007306 ORTHO05D009112 7.1e-18 94.4 140 45.0
Glyma.19G147700 Glycine max HOM05D007306 ORTHO05D009112 9.3e-18 94.0 117 48.7
SGA_v2.0_scaffold69G23062 Striga asiatica HOM05D007306 ORTHO05D009112 1.2e-17 93.6 125 47.2
BcaC02g12458 Brassica carinata HOM05D007306 ORTHO05D009112 2.7e-17 92.4 141 49.6
BcaC02g12459 Brassica carinata HOM05D007306 ORTHO05D009112 2.7e-17 92.4 141 49.6
BolC4t21964H Brassica oleracea HOM05D007306 ORTHO05D009112 2.7e-17 92.4 141 49.6
C04p03260 Brassica napus HOM05D007306 ORTHO05D009112 6.0e-17 91.3 141 48.9
PSO339G5155 Papaver somniferum HOM05D007306 ORTHO05D009112 6.0e-17 91.3 145 45.5
PSO384G4645 Papaver somniferum HOM05D007306 ORTHO05D009112 6.0e-17 91.3 145 45.5
MSTRG.19909 Avicennia marina HOM05D007306 ORTHO05D009112 1.8e-16 89.7 135 43.7
A05p02730 Brassica napus HOM05D007306 ORTHO05D009112 1.8e-16 89.7 133 48.1
BraA05t19265Z Brassica rapa HOM05D007306 ORTHO05D009112 1.8e-16 89.7 133 48.1
HanXRQChr13g0390881 Helianthus annuus HOM05D007306 ORTHO05D009112 1.8e-16 89.7 146 45.9
BcaNung04408 Brassica carinata HOM05D007306 ORTHO05D009112 2.3e-16 89.4 134 48.5
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 2.3e-16 89.4 133 42.9
Glyma.09G111500 Glycine max HOM05D007306 ORTHO05D009112 3.0e-16 89.0 127 45.7
Aa31LG1G24110 Aethionema arabicum HOM05D007306 ORTHO05D009112 5.1e-16 88.2 128 46.9
AT2G42110 Arabidopsis thaliana HOM05D007306 ORTHO05D009112 1.5e-15 86.7 127 48.0
Sp4g24320 Schrenkiella parvula HOM05D007306 ORTHO05D009112 1.9e-15 86.3 128 45.3
Hund24792 Selenicereus undatus HOM05D007306 ORTHO05D009112 3.3e-15 85.5 157 42.0
Carub.0004s2445 Capsella rubella HOM05D007306 ORTHO05D009112 4.3e-15 85.1 130 44.6
Thhalv10017403m.g Eutrema salsugineum HOM05D007306 ORTHO05D009112 4.3e-15 85.1 127 46.5
Actinidia22036 Actinidia chinensis HOM05D007306 ORTHO05D009112 5.7e-15 84.7 132 46.2
Cc06_g15870 Coffea canephora HOM05D007306 ORTHO05D009112 5.7e-15 84.7 149 40.9
VMungo0720G2523 Vigna mungo HOM05D007306 ORTHO05D009112 1.6e-14 83.2 130 40.8
Ca_08521_v3 Cicer arietinum L. HOM05D007306 ORTHO05D009112 2.8e-14 82.4 112 50.9
MBI06_g29488_MAGBIO Magnolia biondii HOM05D007306 ORTHO05D009112 3.7e-14 82.0 128 42.2
Lsat_1_v5_gn_5_163480 Lactuca sativa HOM05D007306 ORTHO05D009112 3.1e-13 79.0 150 39.3
AUR62012035 Chenopodium quinoa HOM05D007306 ORTHO05D009112 4.1e-13 78.6 137 43.1
GSVIVG01033497001 Vitis vinifera HOM05D007306 ORTHO05D009112 2.6e-12 75.9 131 39.7
ECA248G3448 Erigeron canadensis HOM05D007306 ORTHO05D009112 7.6e-12 74.3 145 35.9
Oeu063786.1 Olea europaea HOM05D007306 ORTHO05D009112 3.8e-11 72.0 127 41.7
THA.LOC104802563 Tarenaya hassleriana HOM05D007306 ORTHO05D009112 5.5e-10 68.2 128 35.9
AUR62015369 Chenopodium quinoa HOM05D007306 ORTHO05D009112 1.2e-09 67.0 146 38.4
Sc19g0007100 Simmondsia chinensis HOM05D007306 ORTHO05D009112 2.3e-08 62.8 86 43.0
ATR0807G086 Amborella trichopoda HOM05D007306 ORTHO05D009112 6.7e-08 61.2 128 38.3
CDE02G0820 Ceratophyllum demersum HOM05D007306 ORTHO05D009112 1.5e-07 60.1 133 39.1
Ah.04g152480 Amaranthus hybridus HOM05D007306 ORTHO05D009112 2.5e-07 59.3 168 33.9
EL10Ac3g06917 Beta vulgaris HOM05D007306 ORTHO05D009112 5.7e-07 58.2 162 30.9
Sed0003989 Sechium edule HOM05D007306 ORTHO05D009112 1.6e-06 56.6 48 54.2


User provided reference genes

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