Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 9.3e-162 573.5 303 100.0
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 9.4e-122 440.7 310 76.1
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 1.1e-119 433.7 310 74.8
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 9.7e-119 430.6 300 78.7
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 2.2e-118 429.5 304 75.0
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 2.8e-118 429.1 313 75.4
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 1.8e-117 426.4 313 74.4
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 4.1e-117 425.2 299 76.9
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 5.3e-117 424.9 310 72.3
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 1.0e-115 420.6 305 73.4
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 1.0e-115 420.6 321 72.3
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.2e-113 413.7 312 71.5
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 4.7e-113 411.8 311 72.3
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 1.4e-112 410.2 304 73.0
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 2.3e-112 409.5 312 70.5
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 3.0e-112 409.1 304 73.0
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 1.5e-111 406.8 311 71.1
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 1.5e-111 406.8 311 71.1
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 1.5e-111 406.8 308 71.4
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 2.0e-111 406.4 308 70.5
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 2.0e-111 406.4 305 71.8
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 4.4e-111 405.2 306 72.9
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 6.3e-110 401.4 316 69.0
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 7.0e-109 397.9 303 71.6
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 7.0e-109 397.9 295 71.9
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 1.6e-108 396.7 259 78.0
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 2.7e-108 396.0 302 71.5
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 7.7e-108 394.4 314 67.5
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 3.8e-107 392.1 304 71.4
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 5.0e-107 391.7 311 70.1
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 1.1e-106 390.6 297 71.7
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 4.2e-106 388.7 274 74.5
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 9.4e-106 387.5 305 68.2
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 9.4e-106 387.5 253 77.5
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 9.4e-106 387.5 262 77.5
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 1.6e-105 386.7 254 77.2
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 2.1e-105 386.3 300 70.0
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 3.6e-105 385.6 306 67.0
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 4.7e-105 385.2 297 69.7
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.0e-104 384.0 253 77.1
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 1.0e-104 384.0 311 67.2
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 1.8e-104 383.3 255 76.9
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 1.8e-104 383.3 285 71.2
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 4.0e-104 382.1 301 68.1
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 8.8e-104 380.9 314 67.2
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 8.8e-104 380.9 261 76.2
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 7.5e-103 377.9 313 66.5
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 7.5e-103 377.9 313 66.5
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 9.8e-103 377.5 303 66.0
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 9.8e-103 377.5 301 66.4
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 2.2e-102 376.3 296 66.9
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 3.7e-102 375.6 253 76.3
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 6.3e-102 374.8 259 74.9
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 8.3e-102 374.4 306 65.4
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 1.8e-101 373.2 303 65.0
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 4.1e-101 372.1 261 71.6
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 4.1e-101 372.1 252 75.0
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 9.1e-101 370.9 303 66.0
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 1.2e-100 370.5 313 65.5
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 1.6e-100 370.2 277 69.7
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 1.6e-100 370.2 296 65.5
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 1.6e-100 370.2 296 65.5
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 1.6e-100 370.2 286 68.5
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 2.7e-100 369.4 300 67.0
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 2.7e-100 369.4 293 65.9
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 3.5e-100 369.0 236 79.2
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 7.7e-100 367.9 298 65.1
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 7.7e-100 367.9 252 73.8
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 1.0e-99 367.5 303 65.0
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 2.3e-99 366.3 255 72.5
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 3.8e-99 365.5 265 69.8
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 5.0e-99 365.2 253 72.3
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 6.5e-99 364.8 292 66.4
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 1.1e-98 364.0 253 73.5
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 1.9e-98 363.2 301 66.4
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 9.5e-98 360.9 298 64.8
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 4.7e-97 358.6 236 74.6
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 1.4e-96 357.1 299 64.2
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 1.8e-96 356.7 288 67.0
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 1.8e-96 356.7 312 63.8
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 2.3e-96 356.3 285 64.6
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 2.3e-96 356.3 264 74.2
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 4.0e-96 355.5 300 61.3
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 4.0e-96 355.5 300 61.3
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 5.2e-96 355.1 300 61.7
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 3.4e-95 352.4 303 66.7
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 9.8e-95 350.9 300 62.3
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 1.7e-94 350.1 300 60.7
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 1.7e-94 350.1 300 62.0
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 2.2e-94 349.7 300 62.0
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 2.8e-94 349.4 283 66.8
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 3.7e-94 349.0 279 64.9
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 6.3e-94 348.2 288 66.0
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 8.3e-94 347.8 269 67.7
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 1.1e-93 347.4 264 70.1
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 1.4e-93 347.1 306 60.1
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 1.8e-93 346.7 282 64.2
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 4.1e-93 345.5 305 60.7
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 4.1e-93 345.5 230 75.2
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 4.1e-93 345.5 366 55.7
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 4.1e-93 345.5 253 69.6
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 7.0e-93 344.7 321 62.0
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 1.6e-92 343.6 302 60.9
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 1.6e-92 343.6 264 69.3
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 1.6e-92 343.6 298 61.7
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 3.5e-92 342.4 276 67.0
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 3.5e-92 342.4 304 61.5
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 4.5e-92 342.0 237 74.3
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 5.9e-92 341.7 298 61.7
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 7.8e-92 341.3 288 65.3
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 2.9e-91 339.3 310 62.6
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 1.1e-90 337.4 259 66.0
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 2.8e-89 332.8 215 79.5
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 6.1e-89 331.6 394 50.8
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 4.0e-88 328.9 334 54.2
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 2.0e-87 326.6 291 60.5
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 4.4e-87 325.5 295 60.0
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 9.8e-87 324.3 299 60.2
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.7e-86 323.6 277 63.5
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 4.9e-86 322.0 384 53.4
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 4.9e-86 322.0 295 59.0
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 1.1e-85 320.9 252 67.1
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.4e-85 320.5 382 53.7
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 3.9e-83 312.4 260 65.8
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 1.2e-81 307.4 240 68.8
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 1.2e-81 307.4 221 67.9
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 2.8e-81 306.2 342 51.5
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 1.4e-80 303.9 246 62.6
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 1.1e-77 294.3 312 56.1
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 2.0e-76 290.0 229 69.0
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 3.5e-76 289.3 227 67.8
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 3.9e-67 259.2 189 73.5
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 2.4e-64 250.0 222 58.1
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 1.3e-62 244.2 400 40.8
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 5.4e-61 238.8 240 48.3
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 4.6e-60 235.7 174 66.1
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 1.0e-59 234.6 223 61.0
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 2.5e-58 229.9 239 48.5
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 1.1e-56 224.6 269 47.6
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 8.4e-54 214.9 253 49.0
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 2.4e-53 213.4 135 78.5
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 2.7e-52 209.9 236 45.3
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 4.6e-52 209.1 228 47.8
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 5.1e-51 205.7 143 71.3
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 8.7e-43 178.3 189 50.8
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 1.4e-37 161.0 124 66.9
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 2.1e-28 130.6 177 43.5
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 2.5e-21 107.1 65 81.5
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 4.2e-21 106.3 78 67.9
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 4.6e-20 102.8 107 46.7
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 2.6e-15 87.0 70 67.1
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 5.9e-15 85.9 76 51.3
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 6.5e-14 82.4 76 59.2
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 2.7e-12 77.0 179 35.8
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 8.8e-11 72.0 52 67.3
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 3.7e-09 66.6 49 73.5
Hund23427 Selenicereus undatus HOM05D002234 ORTHO05D002254 1.4e-08 64.7 248 27.8
FAN14G4716 Fragaria x ananassa HOM05D004474 ORTHO05D210276 7.7e-07 58.9 34 79.4
HPP92_003058 Vanilla planifolia HOM05D002234 ORTHO05D002254 2.9e-06 57.0 209 26.8
HPP92_002996 Vanilla planifolia HOM05D004474 ORTHO05D432408 5.0e-06 56.2 63 57.1
Hund21439 Selenicereus undatus HOM05D002234 ORTHO05D002254 6.5e-06 55.8 203 26.6
TAR375G0159 Trochodendron aralioides HOM05D002234 ORTHO05D002254 6.5e-06 55.8 201 30.3
C01p35130 Brassica napus HOM05D027121 ORTHO05D039971 8.5e-06 55.5 103 35.9


User provided reference genes

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