Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G031300 Manihot esculenta HOM05D006205 ORTHO05D007703 2.5e-214 748.4 361 100.0
Potri.016G049700 Populus trichocarpa HOM05D006205 ORTHO05D007703 3.3e-198 694.9 361 90.6
Duzib106G0917 Durio zibethinus HOM05D006205 ORTHO05D007703 4.3e-198 694.5 361 90.6
Thecc.05G167100 Theobroma cacao HOM05D006205 ORTHO05D007703 1.6e-197 692.6 361 90.3
Potri.006G058400 Populus trichocarpa HOM05D006205 ORTHO05D007703 2.1e-197 692.2 361 90.3
Ciclev10031918m.g Citrus clementina HOM05D006205 ORTHO05D007703 3.6e-197 691.4 359 90.8
CSS0013544 Camellia sinensis var. sinensis HOM05D006205 ORTHO05D007703 6.2e-197 690.6 361 89.5
Gohir.A01G194800 Gossypium hirsutum HOM05D006205 ORTHO05D007703 6.2e-197 690.6 361 89.8
Gorai.002G228500 Gossypium raimondii HOM05D006205 ORTHO05D007703 1.8e-196 689.1 361 89.5
Dinv24098 Davidia involucrata HOM05D006205 ORTHO05D007703 4.0e-196 688.0 361 88.4
Actinidia17259 Actinidia chinensis HOM05D006205 ORTHO05D007703 6.9e-196 687.2 361 88.9
Sabra16G0053600 Salix brachista HOM05D006205 ORTHO05D007703 6.9e-196 687.2 361 89.2
Prupe.7G072500 Prunus persica HOM05D006205 ORTHO05D007703 1.5e-195 686.0 361 89.2
Sabra06G0041700 Salix brachista HOM05D006205 ORTHO05D007703 3.4e-195 684.9 361 89.2
Gohir.D01G185000 Gossypium hirsutum HOM05D006205 ORTHO05D007703 5.8e-195 684.1 361 89.2
CiPaw.09G032800 Carya illinoinensis HOM05D006205 ORTHO05D007703 9.9e-195 683.3 359 89.1
Nitab4.5_0006846g0010 Nicotiana tabacum HOM05D006205 ORTHO05D007703 2.2e-194 682.2 361 87.3
Haze_19942 Corylus avellana HOM05D006205 ORTHO05D007703 2.9e-194 681.8 357 89.1
Glyma.19G144900 Glycine max HOM05D006205 ORTHO05D007703 2.9e-194 681.8 361 88.6
Eucgr.K01821 Eucalyptus grandis HOM05D006205 ORTHO05D007703 4.9e-194 681.0 361 88.4
Lju124A32T75 Lonicera japonica HOM05D006205 ORTHO05D007703 6.4e-194 680.6 361 87.8
MSTRG.26097 Avicennia marina HOM05D006205 ORTHO05D007703 1.1e-193 679.9 361 87.0
Ca_08497_v3 Cicer arietinum L. HOM05D006205 ORTHO05D007703 1.1e-193 679.9 361 87.8
Ca_29722_v3 Cicer arietinum L. HOM05D006205 ORTHO05D007703 1.1e-193 679.9 361 87.8
Hma1.2p1_1575F.1_g291620 Hydrangea macrophylla HOM05D006205 ORTHO05D007703 1.1e-193 679.9 359 88.0
Duzib093G1988 Durio zibethinus HOM05D006205 ORTHO05D007703 1.4e-193 679.5 361 87.8
PGR142G1368 Punica granatum HOM05D006205 ORTHO05D007703 2.4e-193 678.7 361 87.0
arahy.Tifrunner.gnm1.ann1.ARGW3J Arachis hypogaea HOM05D006205 ORTHO05D007703 7.1e-193 677.2 358 88.3
Cpa.g.sc85.111 Carica papaya HOM05D006205 ORTHO05D007703 7.1e-193 677.2 361 89.8
arahy.Tifrunner.gnm1.ann1.68EW5P Arachis hypogaea HOM05D006205 ORTHO05D007703 1.6e-192 676.0 358 88.0
TAR623G1003 Trochodendron aralioides HOM05D006205 ORTHO05D007703 6.0e-192 674.1 361 87.8
CAN.G85.9 Capsicum annuum HOM05D006205 ORTHO05D007703 5.1e-191 671.0 361 86.1
QL07p022686 Quercus lobata HOM05D006205 ORTHO05D007703 5.1e-191 671.0 359 88.0
TPR.G4691 Trifolium pratense HOM05D006205 ORTHO05D007703 1.1e-190 669.8 361 86.4
Lalb_Chr18g0047621 Lupinus albus HOM05D006205 ORTHO05D007703 1.5e-190 669.5 361 87.5
SGA_v2.0_scaffold94G28443 Striga asiatica HOM05D006205 ORTHO05D007703 2.5e-190 668.7 362 86.5
Hund19180 Selenicereus undatus HOM05D006205 ORTHO05D007703 3.3e-190 668.3 361 86.4
Phvul.001G139800 Phaseolus vulgaris HOM05D006205 ORTHO05D007703 4.3e-190 667.9 361 86.4
PGSC0003DMG400012937 Solanum tuberosum HOM05D006205 ORTHO05D007703 4.3e-190 667.9 361 85.0
MELO3C009648.2 Cucumis melo HOM05D006205 ORTHO05D007703 7.3e-190 667.2 387 82.4
FvH4_6g22800 Fragaria vesca HOM05D006205 ORTHO05D007703 7.3e-190 667.2 360 87.8
FAN14G5729 Fragaria x ananassa HOM05D006205 ORTHO05D007703 7.3e-190 667.2 360 87.8
FAN02G0014 Fragaria x ananassa HOM05D006205 ORTHO05D007703 1.3e-189 666.4 360 87.5
VMungo1383G0076 Vigna mungo HOM05D006205 ORTHO05D007703 1.6e-189 666.0 361 85.9
THA.LOC104809921 Tarenaya hassleriana HOM05D006205 ORTHO05D007703 4.8e-189 664.5 358 86.0
Psat3g069960 Pisum sativum HOM05D006205 ORTHO05D007703 6.2e-189 664.1 361 85.9
Lsat_1_v5_gn_8_79241 Lactuca sativa HOM05D006205 ORTHO05D007703 1.8e-188 662.5 361 84.2
FAN05G5560 Fragaria x ananassa HOM05D006205 ORTHO05D007703 2.4e-188 662.1 360 87.5
Sed0025317 Sechium edule HOM05D006205 ORTHO05D007703 2.4e-188 662.1 361 85.6
vmacro09103 Vaccinium macrocarpon HOM05D006205 ORTHO05D007703 3.1e-188 661.8 371 84.6
DCAR_013564 Daucus carota HOM05D006205 ORTHO05D007703 4.0e-188 661.4 358 86.0
Medtr7g092680 Medicago truncatula HOM05D006205 ORTHO05D007703 4.0e-188 661.4 361 85.6
CANSAT64G2514 Cannabis sativa HOM05D006205 ORTHO05D007703 2.6e-187 658.7 357 86.8
RcHm_v2.0_Chr3g0480421 Rosa chinensis HOM05D006205 ORTHO05D007703 2.6e-187 658.7 360 86.7
HanXRQChr05g0132791 Helianthus annuus HOM05D006205 ORTHO05D007703 2.9e-186 655.2 360 84.4
Cc06_g16310 Coffea canephora HOM05D006205 ORTHO05D007703 4.9e-186 654.4 359 84.1
Nn2g15532 Nelumbo nucifera HOM05D006205 ORTHO05D007703 4.9e-186 654.4 360 85.8
Solyc03g064030.3 Solanum lycopersicum HOM05D006205 ORTHO05D007703 2.4e-185 652.1 361 83.4
Sopen03g017680 Solanum pennellii HOM05D006205 ORTHO05D007703 2.4e-185 652.1 361 83.1
Migut.K00057 Erythranthe guttata HOM05D006205 ORTHO05D007703 4.2e-185 651.4 361 83.4
Sc25g0005160 Simmondsia chinensis HOM05D006205 ORTHO05D007703 4.2e-185 651.4 359 83.6
Lj1g0022121 Lotus japonicus HOM05D006205 ORTHO05D007703 5.4e-185 651.0 396 79.0
EL10Ac3g06974 Beta vulgaris HOM05D006205 ORTHO05D007703 1.2e-184 649.8 361 83.7
ClCG10G017350 Citrullus lanatus HOM05D006205 ORTHO05D007703 2.7e-184 648.7 428 74.5
Sp3g10390 Schrenkiella parvula HOM05D006205 ORTHO05D007703 1.0e-183 646.7 359 83.0
Carub.0003s1152 Capsella rubella HOM05D006205 ORTHO05D007703 3.0e-183 645.2 359 82.5
QL93p2022_0017 Quercus lobata HOM05D006205 ORTHO05D007703 5.1e-183 644.4 417 75.8
AL3G23830 Arabidopsis lyrata HOM05D006205 ORTHO05D007703 6.7e-183 644.0 359 82.2
AUR62024356 Chenopodium quinoa HOM05D006205 ORTHO05D007703 6.7e-183 644.0 360 83.3
TWI74G1063 Tripterygium wilfordii HOM05D006205 ORTHO05D007703 1.5e-182 642.9 339 88.5
AT3G12150 Arabidopsis thaliana HOM05D006205 ORTHO05D007703 7.4e-182 640.6 359 81.9
SalBow1G2518 Salvia bowleyana HOM05D006205 ORTHO05D007703 4.8e-181 637.9 401 75.8
A05p37150 Brassica napus HOM05D006205 ORTHO05D007703 1.1e-180 636.7 359 81.3
C05p55580 Brassica napus HOM05D006205 ORTHO05D007703 1.1e-180 636.7 359 81.3
BolC5t34227H Brassica oleracea HOM05D006205 ORTHO05D007703 1.1e-180 636.7 359 81.3
BcaC05g29277 Brassica carinata HOM05D006205 ORTHO05D007703 1.4e-180 636.3 359 81.1
Aqoxy1G00212 Aquilegia oxysepala HOM05D006205 ORTHO05D007703 4.0e-180 634.8 361 81.4
BraA05t22513Z Brassica rapa HOM05D006205 ORTHO05D007703 5.3e-180 634.4 359 80.8
Thhalv10021002m.g Eutrema salsugineum HOM05D006205 ORTHO05D007703 3.4e-179 631.7 359 81.3
ATR0605G163 Amborella trichopoda HOM05D006205 ORTHO05D007703 1.0e-178 630.2 357 82.4
AUR62025960 Chenopodium quinoa HOM05D006205 ORTHO05D007703 6.5e-178 627.5 360 82.2
Aa31LG3G6360 Aethionema arabicum HOM05D006205 ORTHO05D007703 5.5e-177 624.4 387 75.7
BraA03t12906Z Brassica rapa HOM05D006205 ORTHO05D007703 9.3e-177 623.6 359 80.8
A03p37470 Brassica napus HOM05D006205 ORTHO05D007703 3.5e-176 621.7 359 80.5
BcaC01g04062 Brassica carinata HOM05D006205 ORTHO05D007703 4.6e-176 621.3 359 80.5
C03p45470 Brassica napus HOM05D006205 ORTHO05D007703 1.3e-175 619.8 361 80.1
BolC3t16816H Brassica oleracea HOM05D006205 ORTHO05D007703 3.9e-175 618.2 361 79.8
PSO384G4504 Papaver somniferum HOM05D006205 ORTHO05D007703 3.9e-175 618.2 357 80.7
unitig_899.g15081 Utricularia gibba HOM05D006205 ORTHO05D007703 5.7e-174 614.4 359 80.8
PSO339G0108 Papaver somniferum HOM05D006205 ORTHO05D007703 2.8e-173 612.1 358 79.9
CDE10G0043 Ceratophyllum demersum HOM05D006205 ORTHO05D007703 8.2e-173 610.5 357 79.8
GSVIVG01033369001 Vitis vinifera HOM05D006205 ORTHO05D007703 8.4e-170 600.5 314 90.1
Os02g0195000 Oryza sativa ssp. japonica HOM05D006205 ORTHO05D007703 1.8e-167 592.8 366 73.2
SEGI_33856 Sequoiadendron giganteum HOM05D006205 ORTHO05D007703 2.3e-167 592.4 357 78.4
Zm00001eb236370 Zea mays HOM05D006205 ORTHO05D007703 5.1e-167 591.3 366 73.5
Nitab4.5_0000016g0140 Nicotiana tabacum HOM05D006205 ORTHO05D007703 2.8e-165 585.5 361 76.7
BcaB04g18694 Brassica carinata HOM05D006205 ORTHO05D007703 1.9e-161 572.8 336 78.9
Cfa016888 Carpinus fangiana HOM05D006205 ORTHO05D007703 3.3e-158 562.0 302 87.7
MD12G1062300 Malus domestica HOM05D006205 ORTHO05D007703 7.4e-158 560.8 306 88.2
ECA236G0538 Erigeron canadensis HOM05D006205 ORTHO05D007703 1.3e-157 560.1 314 84.1
Mapoly0096s0035 Marchantia polymorpha HOM05D006205 ORTHO05D007703 8.8e-151 537.3 358 70.4
SMO334G0020 Selaginella moellendorffii HOM05D006205 ORTHO05D007703 6.3e-149 531.2 357 70.0
Rhsim04G0098500 Rhododendron simsii HOM05D006205 ORTHO05D007703 1.6e-147 526.6 403 65.3
Ah.13g076130 Amaranthus hybridus HOM05D006205 ORTHO05D007703 1.0e-143 513.8 352 71.3
AagrBONN_evm.TU.Sc2ySwM_228.3151 Anthoceros agrestis HOM05D006205 ORTHO05D007703 1.8e-143 513.1 358 68.4
Pp3c3_27370 Physcomitrium patens HOM05D006205 ORTHO05D007703 1.8e-143 513.1 357 67.2
Peaxi162Scf00285g00443 Petunia axillaris HOM05D006205 ORTHO05D007703 3.4e-134 482.3 361 67.9
CsaV3_3G039050 Cucumis sativus L. HOM05D006205 ORTHO05D007703 1.1e-132 477.2 252 89.7
SalBow1G2557 Salvia bowleyana HOM05D006205 ORTHO05D007703 3.1e-132 475.7 365 65.5
CBR_g25855 Chara braunii HOM05D006205 ORTHO05D007703 7.0e-132 474.6 368 62.5
COL.COLO4_36119 Corchorus olitorius HOM05D006205 ORTHO05D007703 1.6e-131 473.4 241 94.6
HPP92_023778 Vanilla planifolia HOM05D006205 ORTHO05D007703 5.4e-116 421.8 239 84.1
Dinv18116 Davidia involucrata HOM05D006205 ORTHO05D007703 1.2e-110 404.1 211 87.2
CARHR086730 Cardamine hirsuta HOM05D006205 ORTHO05D007703 4.7e-104 382.1 205 87.8
Glyma.02G176500 Glycine max HOM05D006205 ORTHO05D007703 7.6e-78 295.0 180 80.6
MBI04_g47239_MAGBIO Magnolia biondii HOM05D006205 ORTHO05D007703 9.3e-68 261.5 152 76.3
MBI04_g14269_MAGBIO Magnolia biondii HOM05D006205 ORTHO05D007703 5.8e-62 242.3 161 70.8
MD14G1062900 Malus domestica HOM05D006205 ORTHO05D007703 2.1e-59 233.8 126 85.7
Actinidia33641 Actinidia chinensis HOM05D006205 ORTHO05D007703 8.7e-58 228.4 119 83.2
Cre02.g076150 Chlamydomonas reinhardtii HOM05D006205 ORTHO05D007703 1.9e-49 200.7 326 38.3
MD14G1062700 Malus domestica HOM05D006205 ORTHO05D007703 1.3e-48 198.0 207 53.1
VMungo1080G0431 Vigna mungo HOM05D006205 ORTHO05D007703 2.4e-39 167.2 98 83.7
arahy.Tifrunner.gnm1.ann1.EV0IJD Arachis hypogaea HOM05D006205 ORTHO05D007703 1.4e-34 151.4 86 86.0
MD12G1062200 Malus domestica HOM05D006205 ORTHO05D007703 6.1e-27 125.9 59 94.9
VMungo0331G0486 Vigna mungo HOM05D006205 ORTHO05D007703 6.3e-24 115.9 111 55.0
Medtr0001s0010 Medicago truncatula HOM05D006205 ORTHO05D007703 5.5e-20 102.8 79 67.1
Glyma.02G176400 Glycine max HOM05D006205 ORTHO05D007703 2.2e-16 90.9 51 78.4
BcaC01g04094 Brassica carinata HOM05D001227 ORTHO05D001082 9.1e-15 85.5 162 36.4
Rhsim04G0098400 Rhododendron simsii HOM05D000259 ORTHO05D000155 1.6e-14 84.7 37 97.3
MCO07G325 Micromonas commoda HOM05D006205 ORTHO05D007703 1.8e-07 61.2 274 24.5


User provided reference genes

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