Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 1.7e-63 245.7 119 100.0
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 1.6e-56 222.6 119 93.3
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 1.0e-55 219.9 118 88.1
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 5.1e-55 217.6 118 88.1
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 1.1e-52 209.9 113 85.8
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 6.9e-52 207.2 106 92.5
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 6.9e-52 207.2 117 82.9
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 2.6e-51 205.3 114 84.2
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 2.2e-50 202.2 114 85.1
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 3.8e-50 201.4 115 84.3
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 4.9e-50 201.1 106 89.6
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 6.4e-50 200.7 119 79.0
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 7.1e-49 197.2 115 78.3
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 7.1e-49 197.2 115 82.6
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 9.3e-49 196.8 106 84.9
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 1.6e-48 196.1 109 86.2
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 3.5e-48 194.9 116 77.6
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 3.5e-48 194.9 116 77.6
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 7.9e-48 193.7 107 82.2
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 1.3e-47 193.0 114 77.2
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 1.3e-47 193.0 119 76.5
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 1.3e-47 193.0 116 75.0
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 1.7e-47 192.6 107 81.3
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 2.3e-47 192.2 119 79.0
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 3.0e-47 191.8 106 83.0
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 3.9e-47 191.4 104 84.6
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 3.9e-47 191.4 97 89.7
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 3.9e-47 191.4 109 82.6
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 3.9e-47 191.4 104 83.7
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 5.1e-47 191.0 104 84.6
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 1.5e-46 189.5 117 80.3
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 2.5e-46 188.7 104 83.7
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 2.5e-46 188.7 107 80.4
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 3.3e-46 188.3 120 79.2
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 4.3e-46 188.0 111 74.8
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 9.6e-46 186.8 109 81.7
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 9.6e-46 186.8 120 73.3
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 1.3e-45 186.4 116 73.3
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 2.1e-45 185.7 119 75.6
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 6.2e-45 184.1 113 77.9
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 8.1e-45 183.7 107 78.5
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 1.1e-44 183.3 108 79.6
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 1.1e-44 183.3 95 88.4
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 1.4e-44 183.0 107 77.6
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 1.4e-44 183.0 101 84.2
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 1.8e-44 182.6 116 71.6
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 5.3e-44 181.0 113 76.1
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 5.3e-44 181.0 113 76.1
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 5.3e-44 181.0 114 78.1
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 6.9e-44 180.6 102 80.4
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 6.9e-44 180.6 119 74.8
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 9.0e-44 180.3 119 69.7
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 1.2e-43 179.9 107 77.6
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 1.5e-43 179.5 121 72.7
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 2.6e-43 178.7 113 76.1
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 2.6e-43 178.7 113 76.1
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 2.6e-43 178.7 113 76.1
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 2.6e-43 178.7 113 76.1
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 4.5e-43 177.9 112 76.8
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 4.5e-43 177.9 118 70.3
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 4.5e-43 177.9 103 84.5
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 9.9e-43 176.8 113 76.1
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 9.9e-43 176.8 116 70.7
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 9.9e-43 176.8 110 80.0
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 1.3e-42 176.4 113 74.3
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 1.3e-42 176.4 108 75.0
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 1.7e-42 176.0 117 72.6
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 2.2e-42 175.6 110 70.9
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 2.2e-42 175.6 114 72.8
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 2.2e-42 175.6 114 72.8
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 2.2e-42 175.6 114 72.8
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 2.9e-42 175.3 114 72.8
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 2.9e-42 175.3 121 70.2
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 3.8e-42 174.9 113 74.3
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 3.8e-42 174.9 116 71.6
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 3.8e-42 174.9 116 71.6
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 3.8e-42 174.9 116 73.3
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 3.8e-42 174.9 107 76.6
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 3.8e-42 174.9 111 72.1
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 3.8e-42 174.9 103 81.6
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 3.8e-42 174.9 103 81.6
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 4.9e-42 174.5 113 73.5
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 6.4e-42 174.1 120 73.3
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 6.4e-42 174.1 112 73.2
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 8.4e-42 173.7 101 78.2
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 8.4e-42 173.7 105 72.4
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 1.1e-41 173.3 110 70.9
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 1.4e-41 172.9 113 73.5
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 2.4e-41 172.2 114 71.9
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 2.4e-41 172.2 104 77.9
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 2.4e-41 172.2 113 74.3
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 4.2e-41 171.4 110 73.6
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 5.4e-41 171.0 103 78.6
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 5.4e-41 171.0 104 76.9
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 5.4e-41 171.0 103 78.6
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 5.4e-41 171.0 107 79.4
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 5.4e-41 171.0 107 72.0
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 7.1e-41 170.6 113 74.3
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 7.1e-41 170.6 113 74.3
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 1.6e-40 169.5 98 79.6
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.1e-40 169.1 111 71.2
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 2.1e-40 169.1 111 70.3
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 2.1e-40 169.1 111 72.1
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 3.5e-40 168.3 113 73.5
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 6.0e-40 167.5 108 72.2
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 7.9e-40 167.2 98 80.6
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 7.9e-40 167.2 119 67.2
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.3e-39 166.4 106 72.6
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 1.3e-39 166.4 111 70.3
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 1.8e-39 166.0 114 71.9
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.3e-39 165.6 111 70.3
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 3.9e-39 164.9 111 69.4
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 3.9e-39 164.9 111 69.4
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 8.7e-39 163.7 112 67.9
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 8.7e-39 163.7 102 76.5
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 1.1e-38 163.3 112 67.9
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 1.5e-38 162.9 107 69.2
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 1.9e-38 162.5 106 74.5
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 1.9e-38 162.5 108 72.2
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 1.9e-38 162.5 97 74.2
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 2.5e-38 162.2 119 65.5
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 2.5e-38 162.2 107 71.0
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 7.4e-38 160.6 102 74.5
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 7.4e-38 160.6 107 72.0
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 9.6e-38 160.2 109 67.9
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 1.3e-37 159.8 114 66.7
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.6e-37 159.5 102 73.5
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.1e-37 159.1 102 73.5
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 2.1e-37 159.1 82 84.1
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 2.1e-37 159.1 102 73.5
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 2.1e-37 159.1 109 67.0
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 2.1e-37 159.1 113 68.1
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 2.8e-37 158.7 86 83.7
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 6.2e-37 157.5 102 72.5
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 6.9e-36 154.1 97 77.3
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 2.0e-35 152.5 82 82.9
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 1.7e-34 149.4 91 71.4
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 3.8e-34 148.3 87 77.0
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 7.9e-32 140.6 103 65.0
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 8.7e-31 137.1 103 64.1
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 8.7e-31 137.1 121 57.0
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 1.4e-28 129.8 99 62.6
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 1.7e-26 122.9 61 93.4
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 2.1e-24 115.9 103 55.3
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 2.3e-23 112.5 118 56.8
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 3.3e-22 108.6 95 55.8
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 4.8e-21 104.8 85 60.0
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 2.6e-19 99.0 83 55.4
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 2.6e-19 99.0 61 77.0
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 2.2e-18 95.9 57 75.4
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 3.8e-18 95.1 71 57.7
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 2.3e-15 85.9 64 67.2
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 2.3e-15 85.9 73 52.1
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 5.3e-12 74.7 64 54.7
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 1.0e-10 70.5 57 59.6
Aa31LG3G1100 Aethionema arabicum HOM05D004651 ORTHO05D005761 2.5e-09 65.9 109 42.2
TAR623G0451 Trochodendron aralioides HOM05D004651 ORTHO05D005761 9.4e-09 63.9 57 54.4
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 6.1e-08 61.2 40 70.0


User provided reference genes

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