Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G025100 Manihot esculenta HOM05D003595 ORTHO05D004132 6.8e-54 213.8 110 100.0
Manes.07G063550 Manihot esculenta HOM05D003595 ORTHO05D004132 1.5e-21 106.3 115 57.4
Potri.006G053600 Populus trichocarpa HOM05D003595 ORTHO05D004132 3.2e-19 98.6 111 56.8
Sabra06G0038000 Salix brachista HOM05D003595 ORTHO05D004132 1.6e-18 96.3 110 54.5
Sabra16G0057000 Salix brachista HOM05D003595 ORTHO05D004132 2.7e-18 95.5 113 53.1
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 3.0e-17 92.0 122 47.5
Potri.016G053900 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.1e-16 90.1 115 50.4
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 3.3e-16 88.6 102 50.0
Manes.06G164000 Manihot esculenta HOM05D003595 ORTHO05D004132 7.3e-16 87.4 95 50.5
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 3.6e-15 85.1 97 45.4
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 6.2e-15 84.3 102 45.1
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 6.2e-15 84.3 61 67.2
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 6.2e-15 84.3 123 45.5
Thecc.09G234200 Theobroma cacao HOM05D003595 ORTHO05D004132 1.4e-14 83.2 92 52.2
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 1.8e-14 82.8 103 43.7
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 1.8e-14 82.8 60 66.7
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 2.4e-14 82.4 100 47.0
Thecc.05G160100 Theobroma cacao HOM05D003595 ORTHO05D004132 4.0e-14 81.6 123 43.1
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 6.9e-14 80.9 60 68.3
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 9.0e-14 80.5 85 51.8
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 9.0e-14 80.5 75 53.3
FAN11G1213 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.2e-13 80.1 65 58.5
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 1.2e-13 80.1 108 42.6
Actinidia23974 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.5e-13 79.7 116 43.1
TWI32G0089 Tripterygium wilfordii HOM05D003595 ORTHO05D004132 1.5e-13 79.7 112 46.4
Oeu025870.1 Olea europaea HOM05D003595 ORTHO05D004132 2.0e-13 79.3 75 52.0
Actinidia09350 Actinidia chinensis HOM05D003595 ORTHO05D004132 2.6e-13 79.0 109 41.3
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 2.6e-13 79.0 85 48.2
FAN16G0889 Fragaria x ananassa HOM05D003595 ORTHO05D004132 3.4e-13 78.6 65 56.9
FvH4_3g28800 Fragaria vesca HOM05D003595 ORTHO05D004132 4.4e-13 78.2 65 56.9
FAN21G3881 Fragaria x ananassa HOM05D003595 ORTHO05D004132 4.4e-13 78.2 65 56.9
FAN25G1008 Fragaria x ananassa HOM05D003595 ORTHO05D004132 4.4e-13 78.2 65 56.9
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 4.4e-13 78.2 85 47.1
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 4.4e-13 78.2 85 47.1
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 4.4e-13 78.2 118 47.5
Actinidia24526 Actinidia chinensis HOM05D003595 ORTHO05D004132 5.8e-13 77.8 60 63.3
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 5.8e-13 77.8 116 44.0
MBI02_g05660_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 5.8e-13 77.8 110 41.8
Oeu063323.1 Olea europaea HOM05D003595 ORTHO05D004132 7.6e-13 77.4 65 55.4
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 7.6e-13 77.4 73 54.8
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 9.9e-13 77.0 103 44.7
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.3e-12 76.6 84 48.8
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 1.3e-12 76.6 85 47.1
TAR623G0789 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.3e-12 76.6 67 58.2
TAR623G1528 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.3e-12 76.6 67 58.2
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 1.7e-12 76.3 81 48.1
VMungo1383G3074 Vigna mungo HOM05D003595 ORTHO05D004132 1.7e-12 76.3 99 44.4
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 2.2e-12 75.9 63 55.6
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 2.2e-12 75.9 110 42.7
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 2.9e-12 75.5 78 48.7
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 2.9e-12 75.5 53 69.8
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 4.9e-12 74.7 112 43.8
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 4.9e-12 74.7 101 42.6
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 4.9e-12 74.7 63 58.7
Cfa016846 Carpinus fangiana HOM05D003595 ORTHO05D004132 6.4e-12 74.3 103 45.6
Eucgr.B03689 Eucalyptus grandis HOM05D003595 ORTHO05D004132 6.4e-12 74.3 61 59.0
Gohir.D05G072400 Gossypium hirsutum HOM05D003595 ORTHO05D004132 6.4e-12 74.3 114 44.7
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 6.4e-12 74.3 75 54.7
MD11G1192700 Malus domestica HOM05D003595 ORTHO05D004132 6.4e-12 74.3 75 50.7
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 8.4e-12 73.9 62 61.3
Medtr1g052770 Medicago truncatula HOM05D003595 ORTHO05D004132 8.4e-12 73.9 107 45.8
MSTRG.18428 Avicennia marina HOM05D003595 ORTHO05D004132 1.1e-11 73.6 58 58.6
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.1e-11 73.6 126 34.9
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 1.4e-11 73.2 77 48.1
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 1.9e-11 72.8 99 42.4
Gorai.009G073400 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.9e-11 72.8 114 43.9
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 2.4e-11 72.4 61 55.7
Lj6g0013857 Lotus japonicus HOM05D003595 ORTHO05D004132 2.4e-11 72.4 54 63.0
QL07p021139 Quercus lobata HOM05D003595 ORTHO05D004132 2.4e-11 72.4 63 61.9
Gohir.A05G069500 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.2e-11 72.0 114 43.9
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 3.2e-11 72.0 105 41.0
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 5.4e-11 71.2 107 39.3
Phvul.001G135700 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 5.4e-11 71.2 57 63.2
GSVIVG01025255001 Vitis vinifera HOM05D003595 ORTHO05D004132 5.4e-11 71.2 106 44.3
SGA_v2.0_scaffold42G16100 Striga asiatica HOM05D003595 ORTHO05D004132 7.1e-11 70.9 93 41.9
Ciclev10006718m.g Citrus clementina HOM05D003595 ORTHO05D004132 9.3e-11 70.5 54 63.0
Atru.chr3.2713 Acer truncatum HOM05D003595 ORTHO05D004132 1.2e-10 70.1 80 47.5
Phvul.007G253900 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.2e-10 70.1 56 58.9
Sed0003787 Sechium edule HOM05D003595 ORTHO05D004132 1.2e-10 70.1 88 45.5
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 1.2e-10 70.1 57 56.1
Glyma.08G335700 Glycine max HOM05D003595 ORTHO05D004132 1.6e-10 69.7 80 43.8
VMungo0720G0045 Vigna mungo HOM05D003595 ORTHO05D004132 1.6e-10 69.7 67 50.7
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 2.1e-10 69.3 68 51.5
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 2.7e-10 68.9 56 58.9
Gohir.A11G311600 Gossypium hirsutum HOM05D003595 ORTHO05D004132 2.7e-10 68.9 98 44.9
Sed0023013 Sechium edule HOM05D003595 ORTHO05D004132 2.7e-10 68.9 57 52.6
BcaB06g26165 Brassica carinata HOM05D003595 ORTHO05D004132 3.5e-10 68.6 49 63.3
BcaC05g28203 Brassica carinata HOM05D003595 ORTHO05D004132 3.5e-10 68.6 49 63.3
C05p43150 Brassica napus HOM05D003595 ORTHO05D004132 3.5e-10 68.6 49 63.3
BolC5t33045H Brassica oleracea HOM05D003595 ORTHO05D004132 3.5e-10 68.6 49 63.3
Phvul.006G062400 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 3.5e-10 68.6 61 54.1
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 4.6e-10 68.2 81 43.2
arahy.Tifrunner.gnm1.ann1.ST54C5 Arachis hypogaea HOM05D003595 ORTHO05D004132 6.0e-10 67.8 57 56.1
MSTRG.17593 Avicennia marina HOM05D003595 ORTHO05D004132 6.0e-10 67.8 74 51.4
BcaC08g43305 Brassica carinata HOM05D003595 ORTHO05D004132 6.0e-10 67.8 57 56.1
C06p06520 Brassica napus HOM05D003595 ORTHO05D004132 6.0e-10 67.8 57 56.1
BolC6t35764H Brassica oleracea HOM05D003595 ORTHO05D004132 6.0e-10 67.8 57 56.1
COL.COLO4_28188 Corchorus olitorius HOM05D003595 ORTHO05D004132 6.0e-10 67.8 111 47.7
Migut.N02319 Erythranthe guttata HOM05D003595 ORTHO05D004132 6.0e-10 67.8 82 46.3
Glyma.02G182300 Glycine max HOM05D003595 ORTHO05D004132 6.0e-10 67.8 118 44.9
Sed0006790 Sechium edule HOM05D003595 ORTHO05D004132 7.8e-10 67.4 68 57.4
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 1.0e-09 67.0 49 63.3
Carub.0001s4023 Capsella rubella HOM05D003595 ORTHO05D004132 1.0e-09 67.0 54 55.6
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 1.3e-09 66.6 98 39.8
Lalb_Chr20g0110801 Lupinus albus HOM05D003595 ORTHO05D004132 1.3e-09 66.6 93 43.0
VMungo0540G1156 Vigna mungo HOM05D003595 ORTHO05D004132 1.3e-09 66.6 98 40.8
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 1.7e-09 66.2 49 63.3
CiPaw.09G036200 Carya illinoinensis HOM05D003595 ORTHO05D004132 1.7e-09 66.2 68 57.4
DCAR_031542 Daucus carota HOM05D003595 ORTHO05D004132 1.7e-09 66.2 58 58.6
Gohir.D11G328300 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.7e-09 66.2 98 43.9
Gorai.007G359500 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.7e-09 66.2 98 43.9
Phvul.008G283300 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 2.3e-09 65.9 58 50.0
BcaC05g27345 Brassica carinata HOM05D003595 ORTHO05D004132 3.0e-09 65.5 81 45.7
A06p02550 Brassica napus HOM05D003595 ORTHO05D004132 3.0e-09 65.5 57 54.4
C05p32690 Brassica napus HOM05D003595 ORTHO05D004132 3.0e-09 65.5 81 45.7
BolC5t32002H Brassica oleracea HOM05D003595 ORTHO05D004132 3.0e-09 65.5 81 45.7
BraA06t23462Z Brassica rapa HOM05D003595 ORTHO05D004132 3.0e-09 65.5 57 54.4
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 3.0e-09 65.5 74 47.3
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 3.0e-09 65.5 55 58.2
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 3.0e-09 65.5 108 38.9
Thhalv10022277m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 3.0e-09 65.5 52 61.5
BraA05t21668Z Brassica rapa HOM05D003595 ORTHO05D004132 3.9e-09 65.1 49 61.2
Gohir.D07G127800 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.9e-09 65.1 60 55.0
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 3.9e-09 65.1 92 40.2
AT3G20898 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 5.1e-09 64.7 53 58.5
C01p43270 Brassica napus HOM05D003595 ORTHO05D004132 5.1e-09 64.7 49 61.2
BcaB04g17226 Brassica carinata HOM05D003595 ORTHO05D004132 6.6e-09 64.3 55 54.5
BcaB06g26163 Brassica carinata HOM05D003595 ORTHO05D004132 6.6e-09 64.3 49 61.2
A05p19650 Brassica napus HOM05D003595 ORTHO05D004132 6.6e-09 64.3 81 45.7
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 6.6e-09 64.3 62 48.4
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 8.7e-09 63.9 104 39.4
AT1G51355 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 1.1e-08 63.5 57 54.4
A03p41960 Brassica napus HOM05D003595 ORTHO05D004132 1.1e-08 63.5 53 58.5
Carub.0003s2088 Capsella rubella HOM05D003595 ORTHO05D004132 1.5e-08 63.2 47 63.8
ClCG03G013230 Citrullus lanatus HOM05D003595 ORTHO05D004132 1.9e-08 62.8 53 58.5
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 1.9e-08 62.8 74 47.3
BcaC01g03534 Brassica carinata HOM05D003595 ORTHO05D004132 2.5e-08 62.4 49 61.2
C03p51360 Brassica napus HOM05D003595 ORTHO05D004132 2.5e-08 62.4 49 61.2
BolC3t17422H Brassica oleracea HOM05D003595 ORTHO05D004132 2.5e-08 62.4 49 61.2
BraA03t13349Z Brassica rapa HOM05D003595 ORTHO05D004132 2.5e-08 62.4 53 56.6
Sp3g18930 Schrenkiella parvula HOM05D003595 ORTHO05D004132 2.5e-08 62.4 49 59.2
A05p27810 Brassica napus HOM05D003595 ORTHO05D004132 3.3e-08 62.0 49 59.2
Eucgr.J00765 Eucalyptus grandis HOM05D003595 ORTHO05D004132 3.3e-08 62.0 54 59.3
AL3G34860 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 4.3e-08 61.6 47 61.7
Medtr5g096855 Medicago truncatula HOM05D003595 ORTHO05D004132 4.3e-08 61.6 85 41.2
PGR102G2999 Punica granatum HOM05D003595 ORTHO05D004132 4.3e-08 61.6 92 43.5
ATR0332G104 Amborella trichopoda HOM05D003595 ORTHO05D004132 5.6e-08 61.2 50 58.0
Glyma.02G303900 Glycine max HOM05D003595 ORTHO05D004132 5.6e-08 61.2 97 40.2
Gorai.001G138100 Gossypium raimondii HOM05D003595 ORTHO05D004132 5.6e-08 61.2 60 53.3
BraA05t20870Z Brassica rapa HOM05D003595 ORTHO05D004132 7.3e-08 60.8 81 44.4
BraA05t20871Z Brassica rapa HOM05D003595 ORTHO05D004132 7.3e-08 60.8 81 44.4
MELO3C015194.2 Cucumis melo HOM05D003595 ORTHO05D004132 7.3e-08 60.8 57 56.1
Migut.D00603 Erythranthe guttata HOM05D003595 ORTHO05D004132 9.6e-08 60.5 67 46.3
Atru.chr1.1053 Acer truncatum HOM05D003595 ORTHO05D004132 1.3e-07 60.1 112 37.5
Aa31LG8G7720 Aethionema arabicum HOM05D003595 ORTHO05D004132 1.3e-07 60.1 80 45.0
BcaB07g33584 Brassica carinata HOM05D003595 ORTHO05D004132 1.3e-07 60.1 51 54.9
Migut.J01773 Erythranthe guttata HOM05D003595 ORTHO05D004132 1.3e-07 60.1 56 53.6
A01p33890 Brassica napus HOM05D003595 ORTHO05D004132 1.6e-07 59.7 47 61.7
BraA01t03497Z Brassica rapa HOM05D003595 ORTHO05D004132 1.6e-07 59.7 47 61.7
CARHR041430 Cardamine hirsuta HOM05D003595 ORTHO05D004132 1.6e-07 59.7 48 56.2
Lalb_Chr15g0082551 Lupinus albus HOM05D003595 ORTHO05D004132 2.8e-07 58.9 109 38.5
Glyma.10G100700 Glycine max HOM05D003595 ORTHO05D004132 3.6e-07 58.5 119 37.0
LjContig00081g0018996 Lotus japonicus HOM05D003595 ORTHO05D004132 3.6e-07 58.5 64 46.9
TPR.G1275 Trifolium pratense HOM05D003595 ORTHO05D004132 3.6e-07 58.5 91 39.6
Eucgr.A02382 Eucalyptus grandis HOM05D003595 ORTHO05D004132 6.2e-07 57.8 58 53.4
GSVIVG01033314001 Vitis vinifera HOM05D003595 ORTHO05D004132 6.2e-07 57.8 38 68.4
EL10Ac4g10246 Beta vulgaris HOM05D003595 ORTHO05D004132 8.1e-07 57.4 65 41.5
CsaV3_1G042810 Cucumis sativus L. HOM05D003595 ORTHO05D004132 8.1e-07 57.4 56 55.4
Lalb_Chr18g0050501 Lupinus albus HOM05D003595 ORTHO05D004132 8.1e-07 57.4 62 48.4
MSTRG.3147 Avicennia marina HOM05D002383 ORTHO05D002515 1.8e-06 56.2 51 52.9
Sc03g0007450 Simmondsia chinensis HOM05D002383 ORTHO05D002515 3.1e-06 55.5 81 37.0
SGA_v2.0_scaffold247G44878 Striga asiatica HOM05D003595 ORTHO05D004132 3.1e-06 55.5 58 55.2
Lalb_Chr04g0247411 Lupinus albus HOM05D003595 ORTHO05D004132 5.3e-06 54.7 96 35.4
Lalb_Chr04g0247651 Lupinus albus HOM05D003595 ORTHO05D004132 5.3e-06 54.7 96 35.4
BcaB04g19442 Brassica carinata HOM05D002383 ORTHO05D002515 9.0e-06 53.9 59 44.1
AUR62000124 Chenopodium quinoa HOM05D003595 ORTHO05D004132 9.0e-06 53.9 52 48.1
Potri.010G045200 Populus trichocarpa HOM05D002383 ORTHO05D002515 9.0e-06 53.9 59 42.4


User provided reference genes

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