Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 1.5e-84 317.0 293 100.0
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 1.5e-55 220.7 295 70.2
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 1.6e-54 217.2 298 75.5
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 6.2e-54 215.3 296 72.6
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 1.1e-50 204.5 267 74.2
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 2.7e-49 199.9 268 72.0
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 7.8e-49 198.4 262 66.8
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 1.9e-47 193.7 297 65.7
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 3.3e-47 193.0 269 71.0
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 9.6e-47 191.4 264 69.3
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 1.6e-46 190.7 265 70.6
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 9.9e-44 181.4 269 72.9
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 1.3e-43 181.0 264 68.6
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 1.1e-42 177.9 272 68.4
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 1.1e-42 177.9 182 59.9
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 1.1e-42 177.9 267 66.3
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 6.0e-41 172.2 273 67.8
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 6.0e-41 172.2 268 66.4
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.8e-40 170.6 277 67.9
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 3.0e-40 169.9 271 64.6
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 3.0e-40 169.9 271 64.6
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 5.1e-40 169.1 278 67.6
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 6.7e-40 168.7 270 64.1
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 1.1e-39 167.9 281 70.5
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.1e-39 167.9 278 67.3
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 1.1e-39 167.9 269 65.8
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 1.1e-39 167.9 268 63.4
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 2.5e-39 166.8 274 69.0
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.5e-39 166.8 274 69.0
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 2.5e-39 166.8 270 61.1
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 2.5e-39 166.8 272 63.2
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 3.3e-39 166.4 278 67.3
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 4.3e-39 166.0 267 55.1
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 7.4e-39 165.2 268 71.6
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 7.4e-39 165.2 270 71.5
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 7.4e-39 165.2 270 71.5
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 2.1e-38 163.7 263 71.9
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 2.1e-38 163.7 265 64.2
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 2.8e-38 163.3 270 67.0
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 2.8e-38 163.3 269 67.7
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 3.7e-38 162.9 267 65.2
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 4.8e-38 162.5 273 66.3
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 4.8e-38 162.5 271 63.1
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 4.8e-38 162.5 269 65.4
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 8.1e-38 161.8 267 66.3
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 3.1e-37 159.8 267 64.8
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 5.3e-37 159.1 292 58.9
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 5.3e-37 159.1 270 68.9
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 5.3e-37 159.1 268 65.7
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 1.2e-36 157.9 184 54.3
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 1.5e-36 157.5 184 58.7
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 3.4e-36 156.4 268 69.4
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 3.4e-36 156.4 273 63.7
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 4.5e-36 156.0 182 56.6
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 5.8e-36 155.6 189 55.0
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 5.8e-36 155.6 275 67.6
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 1.3e-35 154.5 267 57.3
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 1.7e-35 154.1 190 53.2
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 2.2e-35 153.7 276 63.0
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 3.8e-35 152.9 271 66.1
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 3.8e-35 152.9 283 61.5
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 6.5e-35 152.1 214 47.7
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 4.2e-34 149.4 269 69.9
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 7.1e-34 148.7 298 48.0
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 1.2e-33 147.9 277 62.8
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 1.6e-33 147.5 266 62.8
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 2.1e-33 147.1 265 63.4
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 3.5e-33 146.4 278 62.9
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 6.0e-33 145.6 275 68.0
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 7.9e-33 145.2 276 63.0
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 1.0e-32 144.8 275 62.5
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 1.0e-32 144.8 263 65.8
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 2.3e-32 143.7 263 65.4
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 3.9e-32 142.9 260 63.8
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 6.7e-32 142.1 266 66.2
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 1.1e-31 141.4 272 58.8
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 3.3e-31 139.8 269 62.8
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 4.3e-31 139.4 266 57.9
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 5.7e-31 139.0 286 61.9
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 5.7e-31 139.0 178 54.5
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 5.7e-31 139.0 268 66.8
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 7.4e-31 138.7 267 64.0
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.3e-30 137.9 177 51.4
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 1.6e-30 137.5 275 64.4
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 4.8e-30 136.0 261 64.4
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 1.1e-29 134.8 279 64.5
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 1.8e-29 134.0 278 57.2
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 3.1e-29 133.3 277 66.1
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 3.1e-29 133.3 252 60.3
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 4.0e-29 132.9 187 55.1
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 9.0e-29 131.7 267 59.2
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 9.0e-29 131.7 278 61.2
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 2.0e-28 130.6 263 57.4
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 2.0e-28 130.6 293 59.0
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 3.4e-28 129.8 286 67.5
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 3.4e-28 129.8 263 62.7
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 4.5e-28 129.4 232 72.4
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 1.7e-27 127.5 283 59.4
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 2.9e-27 126.7 271 61.3
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 6.5e-27 125.6 274 67.5
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 6.5e-27 125.6 275 60.0
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 4.2e-26 122.9 264 55.7
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 4.2e-26 122.9 264 46.2
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 4.2e-26 122.9 264 46.2
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 4.2e-26 122.9 264 50.0
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 5.5e-26 122.5 268 54.1
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 7.1e-26 122.1 264 54.2
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 7.1e-26 122.1 264 54.2
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 4.6e-25 119.4 294 61.9
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 4.6e-25 119.4 262 58.0
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 4.6e-25 119.4 261 60.5
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 1.0e-24 118.2 274 58.0
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 1.0e-24 118.2 288 61.1
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.3e-24 117.9 276 58.3
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 1.3e-24 117.9 278 57.2
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 1.8e-24 117.5 215 47.9
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 3.0e-24 116.7 278 57.6
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 5.1e-24 115.9 260 48.8
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 8.7e-24 115.2 276 56.9
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 8.7e-24 115.2 278 62.2
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 8.7e-24 115.2 185 44.9
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 1.1e-23 114.8 270 58.9
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 1.1e-23 114.8 251 71.7
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 1.1e-23 114.8 273 57.9
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 1.1e-23 114.8 273 57.9
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 1.1e-23 114.8 273 57.9
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 1.1e-23 114.8 210 47.1
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 1.5e-23 114.4 200 49.5
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 4.3e-23 112.8 269 57.6
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 4.3e-23 112.8 269 59.9
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 4.3e-23 112.8 274 64.6
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 5.7e-23 112.5 278 56.8
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 7.4e-23 112.1 267 57.7
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 9.7e-23 111.7 181 43.6
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 1.6e-22 110.9 273 59.0
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 2.2e-22 110.5 273 58.2
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 2.2e-22 110.5 264 62.9
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 2.8e-22 110.2 277 59.6
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 3.7e-22 109.8 270 58.1
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 1.4e-21 107.8 272 58.1
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 1.4e-21 107.8 132 68.9
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 9.0e-21 105.1 167 44.3
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 9.0e-21 105.1 265 47.5
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 1.2e-20 104.8 166 79.5
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 2.0e-20 104.0 275 58.9
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 5.9e-20 102.4 271 51.7
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 5.9e-20 102.4 137 61.3
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 1.7e-19 100.9 284 38.7
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 2.9e-19 100.1 265 31.7
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 5.0e-19 99.4 262 60.7
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 9.4e-18 95.1 266 55.6
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 9.4e-18 95.1 282 54.3
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 4.6e-17 92.8 266 42.5
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 1.0e-16 91.7 260 56.9
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 3.9e-16 89.7 266 48.1
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 3.3e-15 86.7 275 58.5
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 2.0e-12 77.4 227 43.2
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 4.5e-12 76.3 264 51.5
HanXRQChr05g0132091 Helianthus annuus HOM05D004060 ORTHO05D004967 2.9e-11 73.6 267 48.3
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 3.2e-10 70.1 268 39.2
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 1.6e-09 67.8 38 86.8
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 1.6e-09 67.8 120 46.7
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 6.1e-09 65.9 119 49.6
Oeu056892.1 Olea europaea HOM05D004060 ORTHO05D004967 6.1e-09 65.9 75 54.7
ECA236G0930 Erigeron canadensis HOM05D004060 ORTHO05D001964 2.0e-07 60.8 117 84.6
AUR62026012 Chenopodium quinoa HOM05D004060 ORTHO05D004967 7.4e-07 58.9 64 56.2
arahy.Tifrunner.gnm1.ann1.3TR3AL Arachis hypogaea HOM05D002100 ORTHO05D002310 1.3e-06 58.2 38 73.7
AUR62024421 Chenopodium quinoa HOM05D004060 ORTHO05D004967 1.7e-06 57.8 61 59.0


User provided reference genes

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