Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G021201 Manihot esculenta HOM05D004997 ORTHO05D005921 5.0e-45 184.1 95 100.0
Manes.11G058500 Manihot esculenta HOM05D004997 ORTHO05D005921 3.3e-25 118.2 118 60.2
Potri.004G131900 Populus trichocarpa HOM05D004997 ORTHO05D005921 3.7e-24 114.8 111 62.2
Solyc08g016420.3 Solanum lycopersicum HOM05D004997 ORTHO05D005921 1.1e-23 113.2 111 61.3
Dinv32261 Davidia involucrata HOM05D004997 ORTHO05D005921 1.8e-23 112.5 111 60.4
TWI38G0351 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 1.8e-23 112.5 111 59.5
Atru.chr10.1243 Acer truncatum HOM05D004997 ORTHO05D005921 2.4e-23 112.1 111 60.4
Eucgr.E02397 Eucalyptus grandis HOM05D004997 ORTHO05D005921 2.4e-23 112.1 111 59.5
Sopen08g006800 Solanum pennellii HOM05D004997 ORTHO05D005921 4.1e-23 111.3 111 60.4
Nn4g24866 Nelumbo nucifera HOM05D004997 ORTHO05D005921 9.1e-23 110.2 111 59.5
PSO339G4484 Papaver somniferum HOM05D004997 ORTHO05D005921 1.2e-22 109.8 111 58.6
Actinidia07691 Actinidia chinensis HOM05D004997 ORTHO05D005921 2.0e-22 109.0 111 58.6
CSS0020008 Camellia sinensis var. sinensis HOM05D004997 ORTHO05D005921 2.7e-22 108.6 111 58.6
PSO384G3576 Papaver somniferum HOM05D004997 ORTHO05D005921 3.5e-22 108.2 111 57.7
CAN.G134.135 Capsicum annuum HOM05D004997 ORTHO05D000105 5.9e-22 107.5 111 57.7
Cfa000953 Carpinus fangiana HOM05D004997 ORTHO05D005921 5.9e-22 107.5 111 59.5
Gohir.D01G100600 Gossypium hirsutum HOM05D004997 ORTHO05D005921 7.7e-22 107.1 107 58.9
THA.LOC104814295 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 7.7e-22 107.1 111 55.9
CANSAT35G1260 Cannabis sativa HOM05D004997 ORTHO05D005921 1.3e-21 106.3 110 57.3
CiPaw.10G092400 Carya illinoinensis HOM05D004997 ORTHO05D005921 1.3e-21 106.3 111 56.8
Gohir.D05G151300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 1.3e-21 106.3 110 58.2
Gorai.009G155300 Gossypium raimondii HOM05D004997 ORTHO05D005921 1.3e-21 106.3 110 58.2
THA.LOC104812669 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 1.3e-21 106.3 111 55.9
Thecc.06G151500 Theobroma cacao HOM05D004997 ORTHO05D005921 1.3e-21 106.3 110 58.2
TPR.G13287 Trifolium pratense HOM05D004997 ORTHO05D005921 1.3e-21 106.3 111 58.6
Gorai.002G125400 Gossypium raimondii HOM05D004997 ORTHO05D005921 1.7e-21 105.9 107 57.9
MSTRG.7483 Avicennia marina HOM05D004997 ORTHO05D005921 2.2e-21 105.5 106 59.4
Ciclev10017164m.g Citrus clementina HOM05D004997 ORTHO05D005921 2.2e-21 105.5 111 56.8
Gohir.A10G040300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 2.2e-21 105.5 110 57.3
CAN.G134.136 Capsicum annuum HOM05D004997 ORTHO05D005921 3.8e-21 104.8 111 56.8
Medtr5g055650 Medicago truncatula HOM05D004997 ORTHO05D005921 3.8e-21 104.8 109 57.8
PGR042G1500 Punica granatum HOM05D004997 ORTHO05D005921 3.8e-21 104.8 111 56.8
TWI38G1166 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 3.8e-21 104.8 107 57.9
Aa31LG6G5670 Aethionema arabicum HOM05D004997 ORTHO05D005921 5.0e-21 104.4 113 54.9
TAR626G0896 Trochodendron aralioides HOM05D004997 ORTHO05D005921 5.0e-21 104.4 111 56.8
VMungo0251G3606 Vigna mungo HOM05D004997 ORTHO05D005921 5.0e-21 104.4 109 57.8
MSTRG.16239 Avicennia marina HOM05D004997 ORTHO05D005921 6.5e-21 104.0 106 57.5
CARHR029400 Cardamine hirsuta HOM05D004997 ORTHO05D005921 6.5e-21 104.0 111 55.0
Phvul.002G321900 Phaseolus vulgaris HOM05D004997 ORTHO05D005921 6.5e-21 104.0 109 56.9
Lj5g0010316 Lotus japonicus HOM05D004997 ORTHO05D005921 8.5e-21 103.6 109 57.8
Sed0006544 Sechium edule HOM05D004997 ORTHO05D005921 8.5e-21 103.6 111 55.9
Carub.0001s2824 Capsella rubella HOM05D004997 ORTHO05D005921 1.1e-20 103.2 111 54.1
Duzib192G0549 Durio zibethinus HOM05D004997 ORTHO05D005921 1.1e-20 103.2 111 57.7
Duzib235G0692 Durio zibethinus HOM05D004997 ORTHO05D005921 1.1e-20 103.2 115 54.8
Glyma.08G046600 Glycine max HOM05D004997 ORTHO05D005921 1.1e-20 103.2 109 56.9
MD10G1262900 Malus domestica HOM05D004997 ORTHO05D005921 1.1e-20 103.2 111 56.8
Ah.09g232610 Amaranthus hybridus HOM05D000413 ORTHO05D000292 1.5e-20 102.8 115 53.9
AL1G43880 Arabidopsis lyrata HOM05D004997 ORTHO05D005921 1.5e-20 102.8 111 54.1
Gorai.011G043400 Gossypium raimondii HOM05D004997 ORTHO05D005921 1.5e-20 102.8 110 56.4
Psat2g084800 Pisum sativum HOM05D004997 ORTHO05D005921 1.5e-20 102.8 109 57.8
Gohir.A05G148700 Gossypium hirsutum HOM05D004997 ORTHO05D005921 1.9e-20 102.4 110 57.3
Lj4g0009583 Lotus japonicus HOM05D004997 ORTHO05D005921 1.9e-20 102.4 109 56.9
MD05G1284500 Malus domestica HOM05D004997 ORTHO05D005921 1.9e-20 102.4 111 55.9
HPP92_006252 Vanilla planifolia HOM05D004997 ORTHO05D005921 1.9e-20 102.4 111 55.9
Sed0005528 Sechium edule HOM05D004997 ORTHO05D005921 2.5e-20 102.1 111 55.9
SGA_v2.0_scaffold1G00167 Striga asiatica HOM05D004997 ORTHO05D005921 2.5e-20 102.1 106 57.5
Glyma.12G006600 Glycine max HOM05D004997 ORTHO05D005921 3.2e-20 101.7 109 56.0
Migut.M00914 Erythranthe guttata HOM05D004997 ORTHO05D005921 4.2e-20 101.3 106 56.6
Gorai.002G185400 Gossypium raimondii HOM05D004997 ORTHO05D005921 4.2e-20 101.3 110 57.3
Prupe.4G079900 Prunus persica HOM05D004997 ORTHO05D005921 4.2e-20 101.3 111 55.0
Lalb_Chr05g0222161 Lupinus albus HOM05D004997 ORTHO05D005921 5.5e-20 100.9 107 56.1
CiPaw.09G124400 Carya illinoinensis HOM05D004997 ORTHO05D005921 7.2e-20 100.5 111 54.1
HanXRQChr01g0020611 Helianthus annuus HOM05D004997 ORTHO05D005921 7.2e-20 100.5 110 55.5
FAN21G2809 Fragaria x ananassa HOM05D004997 ORTHO05D005921 9.4e-20 100.1 111 55.0
ECA233G0220 Erigeron canadensis HOM05D004997 ORTHO05D005921 1.2e-19 99.8 109 55.0
HanXRQChr11g0340951 Helianthus annuus HOM05D004997 ORTHO05D005921 1.2e-19 99.8 106 56.6
Gohir.D10G041200 Gossypium hirsutum HOM05D004997 ORTHO05D005921 1.6e-19 99.4 110 55.5
QL05p058391 Quercus lobata HOM05D004997 ORTHO05D005921 1.6e-19 99.4 134 47.0
CsaV3_1G032650 Cucumis sativus L. HOM05D004997 ORTHO05D005921 2.7e-19 98.6 111 54.1
RcHm_v2.0_Chr5g0013981 Rosa chinensis HOM05D004997 ORTHO05D005921 3.6e-19 98.2 111 54.1
unitig_32.g11442 Utricularia gibba HOM05D004997 ORTHO05D005921 3.6e-19 98.2 106 54.7
AT1G29990 Arabidopsis thaliana HOM05D004997 ORTHO05D005921 4.7e-19 97.8 109 52.3
Aqoxy3G00593 Aquilegia oxysepala HOM05D004997 ORTHO05D005921 6.1e-19 97.4 110 51.8
MELO3C002717.2 Cucumis melo HOM05D004997 ORTHO05D005921 6.1e-19 97.4 111 53.2
FAN11G3072 Fragaria x ananassa HOM05D004997 ORTHO05D005921 6.1e-19 97.4 110 53.6
Sp1g25870 Schrenkiella parvula HOM05D004997 ORTHO05D005921 6.1e-19 97.4 111 53.2
GSVIVG01021444001 Vitis vinifera HOM05D004997 ORTHO05D005921 6.1e-19 97.4 105 56.2
BcaB07g32600 Brassica carinata HOM05D004997 ORTHO05D005921 8.0e-19 97.1 111 51.4
A09p36530 Brassica napus HOM05D004997 ORTHO05D005921 8.0e-19 97.1 111 51.4
BraA09t39174Z Brassica rapa HOM05D004997 ORTHO05D005921 8.0e-19 97.1 111 51.4
FvH4_3g05660 Fragaria vesca HOM05D004997 ORTHO05D005921 1.8e-18 95.9 110 52.7
arahy.Tifrunner.gnm1.ann1.FF119L Arachis hypogaea HOM05D004997 ORTHO05D005921 2.3e-18 95.5 116 51.7
BcaB03g13847 Brassica carinata HOM05D004997 ORTHO05D005921 2.3e-18 95.5 110 50.9
Thhalv10009093m.g Eutrema salsugineum HOM05D004997 ORTHO05D005921 2.3e-18 95.5 111 53.2
arahy.Tifrunner.gnm1.ann1.06CE9J Arachis hypogaea HOM05D004997 ORTHO05D005921 3.0e-18 95.1 116 51.7
BcaC05g27010 Brassica carinata HOM05D004997 ORTHO05D005921 3.0e-18 95.1 111 50.5
C05p28750 Brassica napus HOM05D004997 ORTHO05D005921 3.0e-18 95.1 111 50.5
BolC5t31593H Brassica oleracea HOM05D004997 ORTHO05D005921 3.0e-18 95.1 111 50.5
DCAR_027919 Daucus carota HOM05D000413 ORTHO05D000292 3.0e-18 95.1 120 50.0
ATR0743G157 Amborella trichopoda HOM05D004997 ORTHO05D005921 8.8e-18 93.6 111 50.5
BcaC06g35482 Brassica carinata HOM05D004997 ORTHO05D005921 8.8e-18 93.6 110 50.0
BolC7t42045H Brassica oleracea HOM05D004997 ORTHO05D005921 8.8e-18 93.6 110 50.0
BraA07t28803Z Brassica rapa HOM05D004997 ORTHO05D005921 1.5e-17 92.8 109 49.5
Zm00001eb238610 Zea mays HOM05D004997 ORTHO05D005921 2.0e-17 92.4 107 53.3
SGA_v2.0_scaffold333G48998 Striga asiatica HOM05D004997 ORTHO05D005921 4.4e-17 91.3 119 50.4
A07p10100 Brassica napus HOM05D004997 ORTHO05D005921 5.7e-17 90.9 114 47.4
Os02g0246300 Oryza sativa ssp. japonica HOM05D004997 ORTHO05D005921 7.5e-17 90.5 110 49.1
CDE02G0055 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 9.8e-17 90.1 111 50.5
CSS0046404 Camellia sinensis var. sinensis HOM05D004997 ORTHO05D005921 1.3e-16 89.7 62 77.4
Phvul.009G128800 Phaseolus vulgaris HOM05D004997 ORTHO05D005921 1.3e-16 89.7 71 71.8
vmacro04021 Vaccinium macrocarpon HOM05D004997 ORTHO05D005921 2.2e-16 89.0 62 75.8
COL.COLO4_31081 Corchorus olitorius HOM05D004997 ORTHO05D005921 2.8e-16 88.6 62 75.8
Haze_05586 Corylus avellana HOM05D004997 ORTHO05D005921 2.8e-16 88.6 68 73.5
Hund21531 Selenicereus undatus HOM05D004997 ORTHO05D005921 4.8e-16 87.8 62 74.2
SEGI_33388 Sequoiadendron giganteum HOM05D004997 ORTHO05D005921 4.8e-16 87.8 110 48.2
CDE09G0791 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 6.3e-16 87.4 111 48.6
MBI07_g26358_MAGBIO Magnolia biondii HOM05D004997 ORTHO05D005921 6.3e-16 87.4 62 75.8
Lsat_1_v5_gn_1_91801 Lactuca sativa HOM05D004997 ORTHO05D005921 8.3e-16 87.0 62 74.2
FAN25G0101 Fragaria x ananassa HOM05D004997 ORTHO05D005921 1.1e-15 86.7 124 46.0
Rhsim13G0211800 Rhododendron simsii HOM05D004997 ORTHO05D005921 1.8e-15 85.9 62 74.2
AUR62039776 Chenopodium quinoa HOM05D004997 ORTHO05D005921 2.4e-15 85.5 62 72.6
Peaxi162Scf01211g00142 Petunia axillaris HOM05D004997 ORTHO05D005921 2.4e-15 85.5 82 62.2
Sabra04G0085700 Salix brachista HOM05D004997 ORTHO05D005921 2.4e-15 85.5 61 75.4
ClCG03G007080 Citrullus lanatus HOM05D004997 ORTHO05D005921 4.1e-15 84.7 62 72.6
C07p15580 Brassica napus HOM05D004997 ORTHO05D005921 5.4e-15 84.3 109 46.8
AUR62030207 Chenopodium quinoa HOM05D004997 ORTHO05D005921 7.0e-15 84.0 61 72.1
Prupe.3G104900 Prunus persica HOM05D004997 ORTHO05D005921 7.0e-15 84.0 62 72.6
PGSC0003DMG400009647 Solanum tuberosum HOM05D004997 ORTHO05D005921 7.0e-15 84.0 92 56.5
Cc02_g37190 Coffea canephora HOM05D004997 ORTHO05D005921 1.2e-14 83.2 62 72.6
Oeu034156.1 Olea europaea HOM05D004997 ORTHO05D005921 2.0e-14 82.4 92 55.4
EL10Ac8g19712 Beta vulgaris HOM05D004997 ORTHO05D005921 3.5e-14 81.6 160 38.1
CAN.G134.137 Capsicum annuum HOM05D004997 ORTHO05D005921 4.5e-14 81.3 95 53.7
Zm00001eb139040 Zea mays HOM05D000901 ORTHO05D005921 7.7e-14 80.5 68 60.3
Oeu052376.1 Olea europaea HOM05D004997 ORTHO05D005921 1.0e-13 80.1 92 53.3
QL06p022817 Quercus lobata HOM05D004997 ORTHO05D005921 1.0e-13 80.1 121 46.3
CAN.G3523.1 Capsicum annuum HOM05D004997 ORTHO05D005921 1.7e-13 79.3 92 54.3
FAN16G0953 Fragaria x ananassa HOM05D004997 ORTHO05D005921 1.7e-13 79.3 62 66.1
Pp3c22_1770 Physcomitrium patens HOM05D004997 ORTHO05D005921 2.3e-13 79.0 109 43.1
Sc17g0004940 Simmondsia chinensis HOM05D004997 ORTHO05D005921 2.3e-13 79.0 92 52.2
Dinv30737 Davidia involucrata HOM05D004997 ORTHO05D005921 5.0e-13 77.8 92 54.3
Mapoly0006s0079 Marchantia polymorpha HOM05D004997 ORTHO05D005921 8.6e-13 77.0 65 61.5
Zm00001eb151600 Zea mays HOM05D000394 ORTHO05D016690 8.6e-13 77.0 63 61.9
Zm00001eb258640 Zea mays HOM05D004997 ORTHO05D005921 8.6e-13 77.0 63 61.9
Zm00001eb310800 Zea mays HOM05D000394 ORTHO05D016690 1.9e-12 75.9 64 60.9
Actinidia39569 Actinidia chinensis HOM05D004997 ORTHO05D005921 5.5e-12 74.3 89 52.8
arahy.Tifrunner.gnm1.ann1.7IX92P Arachis hypogaea HOM05D004997 ORTHO05D005921 7.2e-12 73.9 89 50.6
Zm00001eb225310 Zea mays HOM05D000901 ORTHO05D005921 1.2e-11 73.2 63 60.3
Zm00001eb269380 Zea mays HOM05D000901 ORTHO05D005921 1.2e-11 73.2 64 57.8
SMO367G0874 Selaginella moellendorffii HOM05D004997 ORTHO05D005921 1.6e-11 72.8 109 41.3
AagrBONN_evm.TU.Sc2ySwM_344.2433 Anthoceros agrestis HOM05D004997 ORTHO05D005921 4.7e-11 71.2 112 39.3
SEGI_19850 Sequoiadendron giganteum HOM05D004997 ORTHO05D005921 8.0e-11 70.5 90 48.9
Zm00001eb344510 Zea mays HOM05D000901 ORTHO05D000768 1.0e-10 70.1 64 54.7
PRCOL_00000028 Prasinoderma coloniale HOM05D004997 ORTHO05D005921 1.4e-10 69.7 75 46.7
Gohir.D01G149300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 3.0e-10 68.6 62 62.9
Nitab4.5_0000348g0240 Nicotiana tabacum HOM05D004997 ORTHO05D005921 5.2e-10 67.8 77 54.5
Nitab4.5_0010327g0020 Nicotiana tabacum HOM05D004997 ORTHO05D005921 5.2e-10 67.8 77 54.5
SalBow8G3614 Salvia bowleyana HOM05D004997 ORTHO05D005921 1.2e-09 66.6 101 45.5
Haze_05599 Corylus avellana HOM05D004997 ORTHO05D005921 1.1e-07 60.1 57 61.4
Lsat_1_v5_gn_5_30841 Lactuca sativa HOM05D004997 ORTHO05D005921 1.4e-07 59.7 42 76.2
CDE02G2003 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 4.1e-07 58.2 43 74.4
MCO01G210 Micromonas commoda HOM05D004997 ORTHO05D005921 2.7e-06 55.5 78 42.3


User provided reference genes

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