Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 1.4e-282 975.7 522 100.0
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 2.0e-172 609.8 510 66.9
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 1.4e-162 577.0 537 63.3
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 3.7e-158 562.4 537 60.0
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 3.5e-156 555.8 534 60.1
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 1.2e-140 504.2 528 59.1
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 2.1e-137 493.4 524 55.3
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 8.0e-137 491.5 532 54.5
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 8.8e-136 488.0 518 55.0
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 3.4e-135 486.1 513 55.8
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 7.5e-135 485.0 531 53.7
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 1.8e-133 480.3 545 51.9
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 7.7e-132 474.9 528 54.4
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.3e-131 473.4 527 52.4
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 1.5e-130 470.7 551 51.9
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 5.5e-130 468.8 526 53.4
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 3.6e-129 466.1 526 54.9
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 4.0e-128 462.6 522 52.1
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 1.5e-127 460.7 521 51.4
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 2.2e-126 456.8 556 50.4
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 3.1e-125 453.0 553 50.3
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 1.6e-124 450.7 363 66.4
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 2.0e-124 450.3 557 50.3
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 3.5e-124 449.5 562 50.4
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 4.3e-122 442.6 557 51.2
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 1.0e-120 438.0 535 51.4
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 3.4e-119 433.0 564 48.4
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 8.3e-118 428.3 539 50.5
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 2.4e-117 426.8 502 53.4
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 2.4e-117 426.8 549 49.2
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 4.1e-117 426.0 536 50.9
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 9.2e-117 424.9 523 48.8
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 3.3e-114 416.4 512 49.2
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 5.6e-114 415.6 507 50.7
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 9.5e-114 414.8 512 49.4
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 2.8e-113 413.3 533 47.3
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 4.7e-113 412.5 467 54.2
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 6.2e-113 412.1 554 46.6
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 3.4e-111 406.4 532 47.2
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 7.5e-111 405.2 532 50.0
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 9.8e-111 404.8 550 47.8
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 9.8e-111 404.8 534 47.0
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 2.9e-110 403.3 526 48.5
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 8.3e-110 401.7 539 47.7
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 1.4e-109 401.0 514 48.4
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 3.2e-109 399.8 529 49.3
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 4.6e-108 396.0 545 46.6
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 6.0e-108 395.6 528 46.2
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 1.3e-107 394.4 531 47.5
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 2.3e-107 393.7 526 49.8
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 5.1e-107 392.5 532 47.2
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 5.1e-107 392.5 536 49.1
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 3.3e-106 389.8 517 47.6
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 3.3e-106 389.8 534 46.6
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 5.6e-106 389.0 359 60.2
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 7.3e-106 388.7 531 45.4
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 8.1e-105 385.2 514 46.7
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 1.1e-104 384.8 528 45.3
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 2.3e-104 383.6 531 49.3
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 6.8e-104 382.1 534 45.1
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 1.7e-102 377.5 530 43.6
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 8.3e-102 375.2 517 46.0
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 1.3e-99 367.9 528 44.3
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 1.1e-98 364.8 509 44.2
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 3.3e-98 363.2 541 44.2
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 1.2e-97 361.3 505 45.9
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 1.1e-96 358.2 553 44.1
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 1.4e-96 357.8 519 44.9
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 2.4e-96 357.1 539 41.9
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 3.1e-96 356.7 480 45.6
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 3.1e-96 356.7 493 49.5
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 4.0e-96 356.3 555 44.1
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 6.8e-96 355.5 369 53.9
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 2.6e-95 353.6 530 43.2
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 4.4e-95 352.8 458 46.9
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 4.4e-95 352.8 519 43.4
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 7.6e-95 352.1 519 44.9
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 9.2e-93 345.1 479 45.3
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 3.3e-90 336.7 464 45.0
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 3.3e-90 336.7 371 51.2
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 1.6e-89 334.3 475 46.3
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 4.8e-89 332.8 523 42.4
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 8.1e-89 332.0 533 42.4
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 1.4e-88 331.3 539 41.6
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 1.4e-88 331.3 477 43.8
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 3.1e-88 330.1 373 50.7
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 6.9e-88 328.9 511 40.9
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 1.2e-87 328.2 521 40.5
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 1.3e-86 324.7 485 42.9
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 6.4e-86 322.4 496 44.2
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 1.6e-84 317.8 462 43.1
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 3.5e-84 316.6 524 41.4
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 7.8e-84 315.5 483 45.3
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 1.7e-83 314.3 533 42.0
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 1.7e-83 314.3 533 42.0
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 1.7e-83 314.3 533 42.0
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 1.1e-82 311.6 354 48.3
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 4.3e-82 309.7 466 42.1
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 4.3e-82 309.7 466 42.1
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 4.3e-82 309.7 466 42.1
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 4.3e-82 309.7 527 41.6
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 5.6e-82 309.3 441 43.8
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 2.8e-81 307.0 439 42.6
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 3.1e-80 303.5 374 47.6
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 6.9e-80 302.4 459 43.4
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 1.2e-79 301.6 530 40.2
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 1.2e-79 301.6 530 40.2
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 1.5e-79 301.2 527 40.4
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 2.0e-79 300.8 439 43.1
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 4.5e-79 299.7 369 45.5
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 7.6e-79 298.9 463 41.5
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 4.9e-78 296.2 305 53.1
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 6.4e-78 295.8 372 45.4
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 1.9e-77 294.3 351 46.7
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 2.4e-77 293.9 369 46.3
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 9.3e-77 292.0 435 44.6
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 2.7e-76 290.4 499 40.3
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 6.0e-76 289.3 388 45.4
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 1.0e-75 288.5 535 37.9
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 1.8e-75 287.7 372 45.2
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 3.9e-75 286.6 367 45.2
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 5.1e-75 286.2 527 37.6
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 1.9e-74 284.3 541 38.1
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 5.6e-74 282.7 409 40.8
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 1.3e-73 281.6 530 38.1
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 4.8e-73 279.6 458 39.7
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 1.2e-71 275.0 321 48.0
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 1.5e-71 274.6 518 37.6
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 2.6e-71 273.9 474 39.5
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 7.9e-68 262.3 449 39.2
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 3.9e-67 260.0 335 46.0
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 2.8e-65 253.8 318 46.9
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.1e-64 251.9 360 47.8
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 2.7e-60 237.3 455 35.4
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 1.0e-59 235.3 342 42.1
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 7.4e-58 229.2 451 35.0
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.3e-54 218.4 543 32.4
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.3e-54 218.4 543 32.4
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 1.9e-53 214.5 301 41.9
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 4.2e-53 213.4 229 50.7
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 1.0e-43 182.2 403 32.8
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.0e-35 155.6 319 34.2
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.4e-35 155.2 554 25.8
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.3e-35 154.5 419 30.3
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 3.9e-35 153.7 184 46.7
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 5.2e-35 153.3 185 46.5
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 6.7e-35 152.9 346 30.1
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 4.4e-34 150.2 186 51.1
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 5.7e-34 149.8 342 31.0
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 9.7e-34 149.1 473 28.3
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 1.0e-30 139.0 515 27.6
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 1.2e-28 132.1 581 23.8
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 2.7e-28 131.0 325 30.8
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 1.4e-27 128.6 124 53.2
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 4.1e-24 117.1 336 27.1
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.7e-22 111.7 214 33.2
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 8.0e-20 102.8 165 43.6
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.1e-16 92.4 223 31.4
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 5.9e-15 86.7 91 49.5
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 1.1e-13 82.4 89 47.2
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 2.6e-10 71.2 63 57.1
Solyc10g017860.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 6.6e-06 56.6 55 45.5


User provided reference genes

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