Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 0.0e+00 1940.6 1059 100.0
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 0.0e+00 1330.5 1051 72.7
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 0.0e+00 1263.1 1065 68.8
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1248.0 1051 67.6
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1243.8 1051 67.6
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 0.0e+00 1232.2 1068 68.1
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 0.0e+00 1226.1 1051 69.6
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 0.0e+00 1222.6 1070 66.5
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 0.0e+00 1219.1 1060 66.9
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 0.0e+00 1196.8 1085 65.4
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 0.0e+00 1189.9 1053 67.1
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 0.0e+00 1189.5 1093 64.1
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 0.0e+00 1185.2 1091 64.0
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 0.0e+00 1184.9 1071 65.0
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 0.0e+00 1179.9 1063 65.9
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1179.1 1055 65.1
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 0.0e+00 1178.7 1056 65.1
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 0.0e+00 1174.1 1056 64.9
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 0.0e+00 1173.3 1049 67.1
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 0.0e+00 1172.5 1058 66.3
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 0.0e+00 1171.4 1050 65.5
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1171.0 1042 64.6
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 0.0e+00 1169.1 1061 65.4
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 0.0e+00 1167.1 1077 64.4
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 0.0e+00 1167.1 1059 65.8
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 0.0e+00 1162.1 1204 59.7
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 0.0e+00 1159.8 1076 64.7
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 0.0e+00 1151.7 1073 64.3
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 0.0e+00 1145.6 1070 63.5
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 0.0e+00 1142.9 1072 62.6
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 0.0e+00 1141.3 982 67.3
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 0.0e+00 1135.9 1060 63.5
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 0.0e+00 1133.2 1104 61.8
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 0.0e+00 1132.1 1068 62.7
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 0.0e+00 1128.6 1057 65.3
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 0.0e+00 1127.1 1052 64.3
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 0.0e+00 1127.1 1068 63.0
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 0.0e+00 1124.8 1067 63.0
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 0.0e+00 1115.5 1068 63.4
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 0.0e+00 1115.5 1117 60.1
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 0.0e+00 1113.6 1067 63.4
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 0.0e+00 1112.1 1042 61.8
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 0.0e+00 1110.1 1089 60.5
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 0.0e+00 1107.8 1066 63.3
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 0.0e+00 1107.0 1069 62.1
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 0.0e+00 1106.3 1051 61.4
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 0.0e+00 1096.6 1073 62.4
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 0.0e+00 1091.3 1065 62.4
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 0.0e+00 1089.7 1081 60.5
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 0.0e+00 1085.9 1047 60.6
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 0.0e+00 1084.3 1104 59.6
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 0.0e+00 1081.6 1062 61.7
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 0.0e+00 1080.5 1059 63.1
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 0.0e+00 1078.5 1019 63.5
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 0.0e+00 1077.8 1052 62.3
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 0.0e+00 1077.0 1036 62.0
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 7.2e-312 1074.3 1040 62.0
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 1.9e-310 1069.3 1043 61.8
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.9e-310 1069.3 1063 60.7
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 5.5e-310 1067.8 1059 60.5
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 2.7e-309 1065.4 1082 59.5
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 3.0e-308 1062.0 1062 60.2
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 8.7e-308 1060.4 1052 60.3
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 1.3e-306 1056.6 1062 59.5
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 8.2e-306 1053.9 1069 60.8
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 1.8e-305 1052.7 967 63.7
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 1.8e-305 1052.7 1054 61.9
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 2.6e-304 1048.9 943 63.4
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 2.6e-304 1048.9 1054 60.7
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 4.5e-304 1048.1 1070 61.2
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 7.9e-301 1037.3 1046 60.7
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 7.4e-299 1030.8 1039 61.1
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 3.7e-298 1028.5 1071 58.3
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 8.2e-298 1027.3 1067 57.3
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 5.3e-297 1024.6 1057 58.6
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 1.2e-296 1023.5 1052 60.6
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 3.4e-296 1021.9 1061 60.2
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 7.7e-296 1020.8 919 64.7
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 4.2e-294 1015.0 1042 60.3
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 6.7e-292 1007.7 890 64.4
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 5.7e-291 1004.6 1069 58.4
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 1.2e-288 996.9 1049 58.3
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 3.5e-288 995.3 1096 55.0
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 6.5e-287 991.1 1034 60.1
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 1.1e-286 990.3 883 64.4
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 1.5e-283 979.9 962 61.9
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 2.6e-283 979.2 885 64.3
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 1.3e-279 966.8 1034 58.4
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 7.0e-273 944.5 1051 55.8
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 3.5e-272 942.2 1050 55.3
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 3.6e-269 932.2 936 57.9
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 2.0e-264 916.4 1088 52.9
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 3.8e-263 912.1 889 60.0
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 7.3e-262 907.9 1114 52.2
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 5.2e-260 901.7 1077 51.0
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 4.3e-254 882.1 697 71.2
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 2.8e-253 879.4 818 62.1
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 5.8e-251 871.7 1042 54.2
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 1.1e-246 857.4 1092 50.6
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 1.2e-245 854.0 1089 49.9
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 2.4e-233 813.1 613 70.6
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 2.9e-226 789.6 606 70.0
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 2.0e-211 740.3 1031 47.5
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 2.2e-210 736.9 1039 48.3
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.4e-201 707.6 643 63.6
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 1.4e-191 674.5 942 46.3
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 6.9e-188 662.1 1177 39.6
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 6.5e-186 655.6 1047 42.5
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 2.6e-179 633.6 574 63.1
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 3.8e-178 629.8 895 47.5
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 2.5e-169 600.5 533 66.8
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 4.7e-168 596.3 600 60.8
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 7.0e-164 582.4 648 53.2
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 5.9e-163 579.3 756 51.9
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 7.5e-158 562.4 903 39.1
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 3.2e-140 503.8 870 39.0
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 1.4e-135 488.4 360 72.5
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 9.9e-102 375.9 1107 33.2
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 9.9e-94 349.4 385 55.1
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 9.9e-94 349.4 623 41.6
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 8.2e-80 303.1 333 55.6
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 2.0e-78 298.5 847 32.6
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 1.0e-77 296.2 577 39.9
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 5.3e-71 273.9 661 32.4
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 9.7e-65 253.1 202 68.3
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 1.0e-61 243.0 208 66.3
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 6.5e-61 240.4 273 57.5
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 5.0e-53 214.2 179 64.2
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 2.0e-46 192.2 265 49.8
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 1.3e-37 162.9 231 53.7
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 8.6e-37 160.2 158 58.9
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 4.7e-35 154.5 157 58.0
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 1.7e-32 146.0 121 64.5
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 7.0e-31 140.6 215 55.3
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 7.8e-30 137.1 132 59.1
Sc16g0005210 Simmondsia chinensis HOM05D005068 ORTHO05D019833 4.4e-25 121.3 219 45.2
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 5.0e-21 107.8 86 60.5
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 6.2e-19 100.9 58 79.3
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 8.1e-19 100.5 51 92.2
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.8e-18 99.4 81 64.2
Sc16g0005200 Simmondsia chinensis HOM05D005068 ORTHO05D019833 3.4e-09 68.6 138 41.3
C04p42190 Brassica napus HOM05D014151 ORTHO05D014954 1.7e-08 66.2 45 66.7
C09p50490 Brassica napus HOM05D014151 ORTHO05D014954 1.7e-08 66.2 45 66.7
Sc16g0005110 Simmondsia chinensis HOM05D060119 ORTHO05D019833 3.7e-08 65.1 114 44.7
C03p21460 Brassica napus HOM05D014151 ORTHO05D014954 6.4e-08 64.3 45 64.4
BolC3t14532H Brassica oleracea HOM05D014151 ORTHO05D014954 6.4e-08 64.3 45 64.4
BcaC09g47952 Brassica carinata HOM05D014151 ORTHO05D014954 1.4e-07 63.2 45 62.2
Aqoxy1G00348 Aquilegia oxysepala HOM05D005068 ORTHO05D078765 2.1e-06 59.3 83 49.4
Psat1g211080 Pisum sativum HOM05D000001 ORTHO05D322910 6.0e-06 57.8 42 61.9
vmacro14087 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 6.0e-06 57.8 215 34.4
Psat3g173480 Pisum sativum HOM05D002362 ORTHO05D002465 7.8e-06 57.4 40 65.0
Psat4g213600 Pisum sativum HOM05D002050 ORTHO05D001949 7.8e-06 57.4 40 65.0


User provided reference genes

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