Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G017800 Manihot esculenta HOM05D003933 ORTHO05D004746 4.4e-236 820.8 403 100.0
Manes.08G053300 Manihot esculenta HOM05D003933 ORTHO05D004746 5.9e-188 661.0 404 81.7
Potri.005G092000 Populus trichocarpa HOM05D003933 ORTHO05D004746 5.0e-171 604.7 404 74.0
Atru.chr11.1157 Acer truncatum HOM05D003933 ORTHO05D004746 1.8e-168 596.3 404 72.8
Thecc.02G159300 Theobroma cacao HOM05D003933 ORTHO05D004746 8.8e-168 594.0 405 72.1
Duzib132G1110 Durio zibethinus HOM05D003933 ORTHO05D004746 1.2e-167 593.6 404 72.8
Duzib277G0001 Durio zibethinus HOM05D003933 ORTHO05D004746 1.2e-167 593.6 404 72.8
QL05p009967 Quercus lobata HOM05D003933 ORTHO05D004746 6.3e-166 587.8 404 72.8
COL.COLO4_08591 Corchorus olitorius HOM05D003933 ORTHO05D004746 1.5e-162 576.6 405 70.6
Prupe.1G348200 Prunus persica HOM05D003933 ORTHO05D004746 1.9e-162 576.2 405 69.4
Cfa008748 Carpinus fangiana HOM05D003933 ORTHO05D004746 3.2e-162 575.5 406 70.9
Ciclev10031732m.g Citrus clementina HOM05D003933 ORTHO05D004746 3.2e-162 575.5 404 71.3
RcHm_v2.0_Chr4g0446781 Rosa chinensis HOM05D003933 ORTHO05D004746 4.2e-162 575.1 406 69.0
Duzib248G0690 Durio zibethinus HOM05D003933 ORTHO05D004746 6.8e-160 567.8 398 69.1
CSS0045284 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.5e-159 566.6 407 69.8
FAN07G0849 Fragaria x ananassa HOM05D003933 ORTHO05D004746 2.0e-159 566.2 406 67.7
MD13G1004400 Malus domestica HOM05D003933 ORTHO05D004746 3.4e-159 565.5 405 66.7
Nitab4.5_0000569g0090 Nicotiana tabacum HOM05D003933 ORTHO05D004746 3.4e-159 565.5 404 68.3
FvH4_4g36990 Fragaria vesca HOM05D003933 ORTHO05D004746 4.4e-159 565.1 406 67.7
PGSC0003DMG402011550 Solanum tuberosum HOM05D003933 ORTHO05D004746 4.4e-159 565.1 405 67.9
Cc11_g08880 Coffea canephora HOM05D003933 ORTHO05D004746 1.7e-158 563.1 405 67.9
Nitab4.5_0003643g0030 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.7e-158 563.1 404 67.8
Solyc12g088450.3 Solanum lycopersicum HOM05D003933 ORTHO05D004746 2.8e-158 562.4 405 67.7
Gohir.A13G060600 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.4e-157 560.1 404 70.0
PGR142G4240 Punica granatum HOM05D003933 ORTHO05D004746 1.4e-157 560.1 406 70.0
TAR629G2222 Trochodendron aralioides HOM05D003933 ORTHO05D004746 3.1e-157 558.9 406 68.5
ClCG10G012050 Citrullus lanatus HOM05D003933 ORTHO05D004746 4.1e-157 558.5 405 68.9
CAN.G107.7 Capsicum annuum HOM05D003933 ORTHO05D004746 1.2e-156 557.0 406 67.2
Gorai.013G069800 Gossypium raimondii HOM05D003933 ORTHO05D004746 3.5e-156 555.4 404 69.3
arahy.Tifrunner.gnm1.ann1.2XRJ77 Arachis hypogaea HOM05D003933 ORTHO05D004746 7.7e-156 554.3 406 65.5
CSS0043425 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.0e-155 553.9 407 68.6
Lj6A748G52 Lonicera japonica HOM05D003933 ORTHO05D004746 1.0e-155 553.9 405 69.6
Lalb_Chr10g0094951 Lupinus albus HOM05D003933 ORTHO05D004746 2.9e-155 552.4 405 67.9
THA.LOC104800863 Tarenaya hassleriana HOM05D003933 ORTHO05D004746 3.8e-155 552.0 408 68.6
TWI77G0671 Tripterygium wilfordii HOM05D003933 ORTHO05D004746 3.8e-155 552.0 410 67.8
Eucgr.J00872 Eucalyptus grandis HOM05D003933 ORTHO05D004746 6.6e-155 551.2 406 69.5
CANSAT78G0638 Cannabis sativa HOM05D003933 ORTHO05D004746 8.6e-155 550.8 405 64.7
arahy.Tifrunner.gnm1.ann1.J5HH0A Arachis hypogaea HOM05D003933 ORTHO05D004746 1.1e-154 550.4 406 65.0
PSO063G7666 Papaver somniferum HOM05D003933 ORTHO05D004746 1.1e-154 550.4 406 67.2
Aa31LG3G18300 Aethionema arabicum HOM05D003933 ORTHO05D004746 2.5e-154 549.3 409 67.0
DCAR_007284 Daucus carota HOM05D003933 ORTHO05D004746 1.6e-153 546.6 405 65.4
Gohir.D13G061300 Gossypium hirsutum HOM05D003933 ORTHO05D004746 3.6e-153 545.4 404 68.1
PSO782G2797 Papaver somniferum HOM05D003933 ORTHO05D004746 1.5e-151 540.0 406 66.5
Rhsim09G0099700 Rhododendron simsii HOM05D003933 ORTHO05D004746 1.5e-151 540.0 401 67.8
Aqoxy5G00269 Aquilegia oxysepala HOM05D003933 ORTHO05D004746 4.4e-151 538.5 406 66.5
Actinidia14952 Actinidia chinensis HOM05D003933 ORTHO05D004746 1.7e-150 536.6 409 66.3
Glyma.09G282800 Glycine max HOM05D003933 ORTHO05D004746 2.9e-150 535.8 409 66.3
Thhalv10004353m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 3.7e-150 535.4 407 66.1
Phvul.003G004900 Phaseolus vulgaris HOM05D003933 ORTHO05D004746 4.9e-150 535.0 408 66.7
Sed0001276 Sechium edule HOM05D003933 ORTHO05D004746 2.4e-149 532.7 400 66.0
TPR.G29790 Trifolium pratense HOM05D003933 ORTHO05D004746 2.4e-149 532.7 405 66.2
vmacro10631 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 1.2e-148 530.4 449 61.2
CARHR190340 Cardamine hirsuta HOM05D003933 ORTHO05D004746 1.6e-148 530.0 413 64.2
CsaV3_3G031790 Cucumis sativus L. HOM05D003933 ORTHO05D004746 1.6e-148 530.0 412 64.8
ECA234G4145 Erigeron canadensis HOM05D003933 ORTHO05D004746 2.0e-148 529.6 406 64.5
AT5G23200 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 2.7e-148 529.3 406 64.5
HanXRQChr12g0377651 Helianthus annuus HOM05D003933 ORTHO05D004746 3.5e-148 528.9 406 65.5
Psat6g135760 Pisum sativum HOM05D003933 ORTHO05D004746 3.5e-148 528.9 405 65.2
AL6G34400 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 1.3e-147 526.9 406 64.0
Cpa.g.sc0.130 Carica papaya HOM05D003933 ORTHO05D004746 3.9e-147 525.4 483 59.8
SGA_v2.0_scaffold38G15064 Striga asiatica HOM05D003933 ORTHO05D004746 6.6e-147 524.6 407 63.6
Carub.0006s2098 Capsella rubella HOM05D003933 ORTHO05D004746 1.1e-146 523.9 406 64.5
Sp2g23940 Schrenkiella parvula HOM05D003933 ORTHO05D004746 1.5e-146 523.5 407 64.9
VMungo0251G2024 Vigna mungo HOM05D003933 ORTHO05D004746 2.5e-146 522.7 429 62.7
Haze_11764 Corylus avellana HOM05D003933 ORTHO05D004746 3.3e-146 522.3 426 63.1
Medtr1g037570 Medicago truncatula HOM05D003933 ORTHO05D004746 3.3e-146 522.3 405 63.7
Peaxi162Scf00081g01011 Petunia axillaris HOM05D003933 ORTHO05D004746 3.3e-146 522.3 398 65.6
Hund08600 Selenicereus undatus HOM05D003933 ORTHO05D004746 5.6e-146 521.5 408 64.5
BraA03t13757Z Brassica rapa HOM05D003933 ORTHO05D004746 7.3e-146 521.2 407 63.1
AUR62032977 Chenopodium quinoa HOM05D003933 ORTHO05D004746 7.3e-146 521.2 418 62.0
C07p44350 Brassica napus HOM05D003933 ORTHO05D004746 1.6e-145 520.0 408 64.2
BolC7t44956H Brassica oleracea HOM05D003933 ORTHO05D004746 1.6e-145 520.0 408 64.2
Lj2g0026122 Lotus japonicus HOM05D003933 ORTHO05D004746 1.6e-145 520.0 405 64.0
SalBow8G0218 Salvia bowleyana HOM05D003933 ORTHO05D004746 3.6e-145 518.8 407 62.7
Migut.L00761 Erythranthe guttata HOM05D003933 ORTHO05D004746 1.0e-144 517.3 412 63.3
EL10Ac9g22955 Beta vulgaris HOM05D003933 ORTHO05D004746 4.0e-144 515.4 412 63.1
MELO3C024011.2 Cucumis melo HOM05D003933 ORTHO05D004746 4.0e-144 515.4 408 63.5
A03p46330 Brassica napus HOM05D003933 ORTHO05D004746 1.5e-143 513.5 407 62.2
Ca_07914_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 2.6e-143 512.7 396 64.1
vmacro10628 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 4.4e-143 511.9 450 59.6
MSTRG.890 Avicennia marina HOM05D003933 ORTHO05D004746 7.5e-143 511.1 420 61.4
Lsat_1_v5_gn_4_15060 Lactuca sativa HOM05D003933 ORTHO05D004746 7.5e-143 511.1 414 62.3
CAN.G1054.19 Capsicum annuum HOM05D003933 ORTHO05D004746 4.6e-140 501.9 399 63.7
Os02g0634600 Oryza sativa ssp. japonica HOM05D003933 ORTHO05D004746 1.7e-139 500.0 412 60.2
FAN12G2057 Fragaria x ananassa HOM05D003933 ORTHO05D004746 1.6e-137 493.4 406 61.6
Nitab4.5_0000934g0120 Nicotiana tabacum HOM05D003933 ORTHO05D004746 3.6e-137 492.3 401 61.3
PGSC0003DMG400021516 Solanum tuberosum HOM05D003933 ORTHO05D004746 4.0e-136 488.8 398 63.1
Sabra05G0076300 Salix brachista HOM05D003933 ORTHO05D004746 2.0e-135 486.5 332 72.6
Lj3g0018867 Lotus japonicus HOM05D003933 ORTHO05D004746 2.6e-135 486.1 401 62.1
Solyc04g078160.4 Solanum lycopersicum HOM05D003933 ORTHO05D004746 3.4e-135 485.7 399 62.4
Glyma.11G100000 Glycine max HOM05D003933 ORTHO05D004746 5.8e-135 485.0 400 64.0
Peaxi162Scf00160g00123 Petunia axillaris HOM05D003933 ORTHO05D004746 7.5e-135 484.6 363 64.2
AL6G18670 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 9.8e-135 484.2 404 60.6
Sopen04g031790 Solanum pennellii HOM05D003933 ORTHO05D004746 1.3e-134 483.8 408 61.3
Nitab4.5_0004707g0060 Nicotiana tabacum HOM05D003933 ORTHO05D004746 2.9e-134 482.6 392 63.0
Lj3g0001561 Lotus japonicus HOM05D003933 ORTHO05D004746 2.4e-133 479.6 401 61.8
DCAR_030211 Daucus carota HOM05D003933 ORTHO05D004746 5.1e-131 471.9 369 65.6
Ca_19016_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.9e-130 469.9 398 62.6
Hma1.2p1_0933F.1_g238310 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 2.5e-130 469.5 436 58.0
Hma1.2p1_2428F.1_g321995 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 2.5e-130 469.5 436 58.0
CiPaw.06G061200 Carya illinoinensis HOM05D003933 ORTHO05D004746 3.3e-130 469.2 345 68.1
arahy.Tifrunner.gnm1.ann1.E3G1QY Arachis hypogaea HOM05D003933 ORTHO05D004746 1.6e-129 466.8 397 61.2
Thhalv10013838m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 4.7e-129 465.3 399 59.1
CANSAT11G2660 Cannabis sativa HOM05D003933 ORTHO05D004746 8.1e-129 464.5 399 59.4
Gohir.A03G165000 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.1e-128 464.2 402 59.5
arahy.Tifrunner.gnm1.ann1.3AB2AC Arachis hypogaea HOM05D003933 ORTHO05D004746 2.0e-127 459.9 397 60.7
Sp6g34690 Schrenkiella parvula HOM05D003933 ORTHO05D004746 4.4e-127 458.8 382 60.2
ATR0618G423 Amborella trichopoda HOM05D003933 ORTHO05D004746 5.8e-127 458.4 406 57.9
AT5G08270 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 1.3e-126 457.2 398 58.5
BcaB08g37269 Brassica carinata HOM05D003933 ORTHO05D004746 2.2e-126 456.4 400 59.2
Medtr4g075120 Medicago truncatula HOM05D003933 ORTHO05D004746 4.9e-126 455.3 401 60.8
Potri.005G092100 Populus trichocarpa HOM05D003933 ORTHO05D004746 1.9e-125 453.4 385 62.1
unitig_26.g10014 Utricularia gibba HOM05D003933 ORTHO05D004746 7.1e-125 451.4 387 58.1
Lalb_Chr19g0139431 Lupinus albus HOM05D003933 ORTHO05D004746 3.5e-124 449.1 406 59.9
VMungo1127G0010 Vigna mungo HOM05D003933 ORTHO05D004746 4.6e-124 448.7 389 60.7
Gohir.D02G188200 Gossypium hirsutum HOM05D003933 ORTHO05D004746 3.6e-121 439.1 402 57.2
Gorai.005G210900 Gossypium raimondii HOM05D003933 ORTHO05D004746 3.1e-120 436.0 402 57.0
MBI06_g23608_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 8.4e-118 427.9 365 59.7
BolC9t59613H Brassica oleracea HOM05D003933 ORTHO05D004746 1.3e-113 414.1 398 54.8
C09p68670 Brassica napus HOM05D003933 ORTHO05D004746 2.8e-113 412.9 398 54.5
MBI06_g32507_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 8.1e-113 411.4 318 62.9
Carub.0006s0715 Capsella rubella HOM05D003933 ORTHO05D004746 1.2e-111 407.5 365 57.8
BraA10t44888Z Brassica rapa HOM05D003933 ORTHO05D004746 1.5e-111 407.1 398 54.3
A10p28410 Brassica napus HOM05D003933 ORTHO05D004746 1.7e-110 403.7 396 54.0
Lj3g0003114 Lotus japonicus HOM05D003933 ORTHO05D004746 4.9e-110 402.1 374 56.7
Lj3g0021014 Lotus japonicus HOM05D003933 ORTHO05D004746 4.9e-110 402.1 374 56.7
HPP92_008573 Vanilla planifolia HOM05D003933 ORTHO05D004746 6.4e-110 401.7 328 60.4
Lj3g0017683 Lotus japonicus HOM05D003933 ORTHO05D004746 1.1e-109 401.0 374 56.4
TPR.G25000 Trifolium pratense HOM05D003933 ORTHO05D004746 3.3e-106 389.4 354 59.0
Sopen12g030430 Solanum pennellii HOM05D003933 ORTHO05D004746 1.4e-104 384.0 251 71.7
Zm00001eb248160 Zea mays HOM05D003933 ORTHO05D004746 3.5e-100 369.4 322 58.7
FAN17G2963 Fragaria x ananassa HOM05D003933 ORTHO05D004746 8.7e-99 364.8 272 63.6
Ca_20843_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.5e-98 364.0 338 58.0
GSVIVG01026245001 Vitis vinifera HOM05D003933 ORTHO05D004746 1.3e-97 360.9 407 52.6
Dinv17619 Davidia involucrata HOM05D003933 ORTHO05D004746 8.2e-97 358.2 258 70.9
SEGI_04055 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 5.3e-96 355.5 385 49.6
Psat7g177760 Pisum sativum HOM05D003933 ORTHO05D004746 1.7e-94 350.5 340 56.8
CSS0006186 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 7.9e-92 341.7 263 66.2
CSS0013970 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 4.1e-88 329.3 273 61.5
CSS0049411 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 5.3e-88 328.9 230 70.0
SMO364G0332 Selaginella moellendorffii HOM05D003933 ORTHO05D004746 1.0e-86 324.7 395 45.6
Mapoly0072s0109 Marchantia polymorpha HOM05D003933 ORTHO05D004746 5.5e-85 318.9 401 45.4
CSS0027256 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 9.3e-85 318.2 255 62.7
CARHR204870 Cardamine hirsuta HOM05D003933 ORTHO05D004746 2.8e-81 306.6 268 60.1
CDE08G0738 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 3.1e-80 303.1 252 58.7
Pp3c10_5850 Physcomitrium patens HOM05D003933 ORTHO05D004746 4.1e-80 302.8 415 40.7
AagrBONN_evm.TU.Sc2ySwM_117.4016 Anthoceros agrestis HOM05D003933 ORTHO05D004746 5.5e-77 292.4 403 43.9
MD16G1003200 Malus domestica HOM05D003933 ORTHO05D004746 1.8e-72 277.3 363 45.5
Sed0007936 Sechium edule HOM05D003933 ORTHO05D004746 5.3e-72 275.8 280 55.0
Sc10g0005110 Simmondsia chinensis HOM05D003933 ORTHO05D004746 1.1e-61 241.5 196 60.2
PGSC0003DMG400011553 Solanum tuberosum HOM05D003933 ORTHO05D004746 4.0e-59 233.0 155 66.5
CBR_g6576 Chara braunii HOM05D003933 ORTHO05D004746 9.1e-56 221.9 439 34.2
SHI31071 Sapria himalayana HOM05D003933 ORTHO05D004746 3.3e-45 186.8 363 37.2
Nn7g37760 Nelumbo nucifera HOM05D003933 ORTHO05D004746 2.8e-41 173.7 126 71.4
Oeu044350.1 Olea europaea HOM05D003933 ORTHO05D004746 3.7e-41 173.3 127 69.3
CDE08G1244 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 5.9e-39 166.0 131 64.1
Sc10g0005100 Simmondsia chinensis HOM05D003933 ORTHO05D004746 1.0e-38 165.2 127 67.7
MCO06G263 Micromonas commoda HOM05D003933 ORTHO05D004746 3.8e-38 163.3 452 28.1
BcaC03g18034 Brassica carinata HOM05D003933 ORTHO05D004746 2.2e-33 147.5 388 31.4
COL.COLO4_20883 Corchorus olitorius HOM05D003933 ORTHO05D004746 3.7e-33 146.7 99 65.7
C02p60970 Brassica napus HOM05D003933 ORTHO05D004746 3.2e-32 143.7 267 36.0
C06p10890 Brassica napus HOM05D003933 ORTHO05D004746 4.1e-32 143.3 267 36.0
Cre02.g086076 Chlamydomonas reinhardtii HOM05D003933 ORTHO05D004746 7.0e-32 142.5 342 29.2
A02p41110 Brassica napus HOM05D003933 ORTHO05D004746 3.3e-21 107.1 104 51.0
Dinv17620 Davidia involucrata HOM05D003933 ORTHO05D028341 6.2e-20 102.8 67 73.1
CARHR204860 Cardamine hirsuta HOM05D003933 ORTHO05D004746 4.4e-18 96.7 65 72.3
MBI06_g42297_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 3.7e-17 93.6 87 56.3
SEGI_32331 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 1.0e-14 85.5 103 48.5
PGSC0003DMG401019957 Solanum tuberosum HOM05D003933 ORTHO05D004746 5.6e-13 79.7 88 45.5
Psat7g177720 Pisum sativum HOM05D003933 ORTHO05D004746 3.1e-11 73.9 44 84.1
BolC2t12147H Brassica oleracea HOM05D003933 ORTHO05D028341 5.8e-10 69.7 40 77.5
COL.COLO4_20881 Corchorus olitorius HOM05D003933 ORTHO05D004746 7.6e-10 69.3 61 62.3
BcaC03g13212 Brassica carinata HOM05D003933 ORTHO05D004746 2.9e-09 67.4 134 36.6
C02p60980 Brassica napus HOM05D003933 ORTHO05D004746 5.1e-06 56.6 60 53.3


User provided reference genes

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