Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G016766 Manihot esculenta HOM05D010002 ORTHO05D012862 4.1e-59 232.6 322 100.0
Manes.09G016680 Manihot esculenta HOM05D000162 ORTHO05D003288 4.2e-19 99.8 56 92.9
Manes.09G016699 Manihot esculenta HOM05D000162 ORTHO05D000090 1.6e-18 97.8 53 94.3
Manes.09G011624 Manihot esculenta HOM05D000162 ORTHO05D000090 3.5e-18 96.7 52 96.2
Manes.09G015250 Manihot esculenta HOM05D000162 ORTHO05D000090 3.5e-18 96.7 55 92.7
Manes.09G017000 Manihot esculenta HOM05D000162 ORTHO05D000090 4.6e-18 96.3 55 90.9
Manes.09G015400 Manihot esculenta HOM05D000162 ORTHO05D000090 1.0e-17 95.1 55 90.9
Manes.09G014860 Manihot esculenta HOM05D000162 ORTHO05D000090 1.3e-17 94.7 53 92.5
Manes.09G014621 Manihot esculenta HOM05D000162 ORTHO05D003288 2.3e-17 94.0 318 58.5
Manes.09G016759 Manihot esculenta HOM05D000162 ORTHO05D000090 6.7e-17 92.4 55 87.3
Manes.09G016622 Manihot esculenta HOM05D000162 ORTHO05D000090 8.7e-17 92.0 52 90.4
Manes.09G016738 Manihot esculenta HOM05D000162 ORTHO05D000090 8.7e-17 92.0 52 90.4
Manes.09G014741 Manihot esculenta HOM05D000162 ORTHO05D000090 3.3e-16 90.1 51 92.2
Manes.09G012500 Manihot esculenta HOM05D000162 ORTHO05D000090 5.6e-16 89.4 47 95.7
Manes.09G016688 Manihot esculenta HOM05D000162 ORTHO05D000090 5.6e-16 89.4 49 91.8
Manes.09G016747 Manihot esculenta HOM05D000162 ORTHO05D000090 7.4e-16 89.0 52 90.4
Manes.07G067700 Manihot esculenta HOM05D000162 ORTHO05D000090 1.3e-15 88.2 52 90.4
Manes.09G011660 Manihot esculenta HOM05D000162 ORTHO05D000090 1.3e-15 88.2 49 93.9
Manes.09G016787 Manihot esculenta HOM05D000162 ORTHO05D003288 1.3e-15 88.2 53 86.8
Manes.07G067738 Manihot esculenta HOM05D000162 ORTHO05D003288 1.6e-15 87.8 52 86.5
Manes.09G011835 Manihot esculenta HOM05D000162 ORTHO05D000090 2.1e-15 87.4 50 92.0
Manes.09G016677 Manihot esculenta HOM05D000162 ORTHO05D000090 2.1e-15 87.4 48 91.7
Manes.09G016769 Manihot esculenta HOM05D000162 ORTHO05D000090 2.8e-15 87.0 51 88.2
Manes.09G011844 Manihot esculenta HOM05D000162 ORTHO05D000090 3.7e-15 86.7 49 91.8
Manes.09G016800 Manihot esculenta HOM05D000162 ORTHO05D000090 6.2e-15 85.9 49 91.8
Manes.09G011620 Manihot esculenta HOM05D000162 ORTHO05D000090 8.1e-15 85.5 50 88.0
Manes.09G011709 Manihot esculenta HOM05D000162 ORTHO05D000090 8.1e-15 85.5 51 88.2
Manes.09G016772 Manihot esculenta HOM05D000162 ORTHO05D000090 3.1e-14 83.6 51 86.3
Manes.09G016900 Manihot esculenta HOM05D000162 ORTHO05D000090 3.1e-14 83.6 47 93.6
Manes.09G013700 Manihot esculenta HOM05D000162 ORTHO05D003288 9.0e-14 82.0 46 93.5
Manes.09G011401 Manihot esculenta HOM05D000162 ORTHO05D000090 2.0e-13 80.9 50 82.0
Manes.09G011961 Manihot esculenta HOM05D000162 ORTHO05D000090 3.4e-13 80.1 51 80.4
Manes.09G017401 Manihot esculenta HOM05D000162 ORTHO05D000090 5.8e-13 79.3 43 95.3
Manes.09G018580 Manihot esculenta HOM05D000162 ORTHO05D000090 1.0e-12 78.6 47 83.0
Manes.09G011799 Manihot esculenta HOM05D000162 ORTHO05D000090 1.3e-12 78.2 50 80.0
Manes.09G016762 Manihot esculenta HOM05D000162 ORTHO05D000090 1.3e-12 78.2 46 89.1
Manes.09G011763 Manihot esculenta HOM05D000162 ORTHO05D000090 2.9e-12 77.0 50 78.0
Manes.09G016750 Manihot esculenta HOM05D000162 ORTHO05D000090 2.9e-12 77.0 46 89.1
Manes.09G012300 Manihot esculenta HOM05D000162 ORTHO05D000090 3.8e-12 76.6 45 86.7
Manes.09G013600 Manihot esculenta HOM05D000162 ORTHO05D003288 6.5e-12 75.9 50 78.0
Manes.09G011632 Manihot esculenta HOM05D000162 ORTHO05D000090 1.1e-11 75.1 49 79.6
Manes.09G011889 Manihot esculenta HOM05D000162 ORTHO05D000090 2.5e-11 73.9 49 79.6
Manes.12G004700 Manihot esculenta HOM05D000162 ORTHO05D000090 2.5e-11 73.9 52 71.2
Manes.09G011300 Manihot esculenta HOM05D000162 ORTHO05D000090 3.2e-11 73.6 48 79.2
Manes.09G011772 Manihot esculenta HOM05D000162 ORTHO05D000090 3.2e-11 73.6 306 80.4
Manes.09G014301 Manihot esculenta HOM05D000162 ORTHO05D000090 3.2e-11 73.6 49 77.6
Manes.09G011640 Manihot esculenta HOM05D000162 ORTHO05D000090 4.2e-11 73.2 43 86.0
Manes.09G011701 Manihot esculenta HOM05D000162 ORTHO05D000090 4.2e-11 73.2 48 79.2
Manes.09G016655 Manihot esculenta HOM05D000162 ORTHO05D000090 1.2e-10 71.6 39 92.3
Manes.09G011652 Manihot esculenta HOM05D000162 ORTHO05D000090 1.6e-10 71.2 40 92.5
Manes.09G015100 Manihot esculenta HOM05D000162 ORTHO05D000090 2.1e-10 70.9 38 94.7
Manes.09G013901 Manihot esculenta HOM05D000162 ORTHO05D000090 4.6e-10 69.7 41 87.8
Manes.09G011925 Manihot esculenta HOM05D000162 ORTHO05D000090 7.9e-10 68.9 48 72.9
Manes.09G018520 Manihot esculenta HOM05D000162 ORTHO05D000090 1.0e-09 68.6 41 85.4
Manes.09G016744 Manihot esculenta HOM05D000162 ORTHO05D000090 2.3e-09 67.4 39 87.2
Manes.07G130500 Manihot esculenta HOM05D000162 ORTHO05D010307 3.0e-09 67.0 49 69.4
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 5.1e-09 66.2 49 55.1
Manes.09G011644 Manihot esculenta HOM05D000162 ORTHO05D000090 5.1e-09 66.2 38 89.5
Manes.09G011692 Manihot esculenta HOM05D031066 ORTHO05D250969 5.1e-09 66.2 40 85.0
Manes.09G011628 Manihot esculenta HOM05D000162 ORTHO05D000090 1.1e-08 65.1 39 87.2
Manes.09G011648 Manihot esculenta HOM05D000162 ORTHO05D000090 1.1e-08 65.1 39 87.2
Manes.09G011898 Manihot esculenta HOM05D000162 ORTHO05D000090 1.1e-08 65.1 43 79.1
Manes.09G011943 Manihot esculenta HOM05D000162 ORTHO05D000090 1.1e-08 65.1 39 87.2
Manes.09G013802 Manihot esculenta HOM05D000162 ORTHO05D000090 1.1e-08 65.1 41 82.9
Manes.09G016611 Manihot esculenta HOM05D000162 ORTHO05D000090 1.1e-08 65.1 41 82.9
FAN21G0676 Fragaria x ananassa HOM05D048608 ORTHO05D003288 1.5e-08 64.7 62 40.3
Manes.09G011902 Manihot esculenta HOM05D000162 ORTHO05D000090 1.5e-08 64.7 33 97.0
arahy.Tifrunner.gnm1.ann1.D2402R Arachis hypogaea HOM05D000162 ORTHO05D015803 1.9e-08 64.3 67 41.8
Manes.09G012700 Manihot esculenta HOM05D000162 ORTHO05D000090 1.9e-08 64.3 38 86.8
Manes.09G011680 Manihot esculenta HOM05D000162 ORTHO05D000090 2.5e-08 63.9 35 94.3
Nitab4.5_0007991g0010 Nicotiana tabacum HOM05D000162 ORTHO05D000090 4.3e-08 63.2 65 50.8
Nn4g25163 Nelumbo nucifera HOM05D010002 ORTHO05D012862 5.7e-08 62.8 62 43.5
Nitab4.5_0002468g0030 Nicotiana tabacum HOM05D011051 ORTHO05D003288 5.7e-08 62.8 54 55.6
MELO3C015787.2 Cucumis melo HOM05D016535 ORTHO05D018164 7.4e-08 62.4 57 47.4
Manes.09G011684 Manihot esculenta HOM05D000162 ORTHO05D000090 7.4e-08 62.4 40 80.0
Manes.09G012000 Manihot esculenta HOM05D000162 ORTHO05D000090 7.4e-08 62.4 37 86.5
RcHm_v2.0_Chr5g0069651 Rosa chinensis HOM05D021378 ORTHO05D000090 9.6e-08 62.0 46 54.3
Dinv44640 Davidia involucrata HOM05D010002 ORTHO05D016273 1.3e-07 61.6 66 47.0
Manes.09G011616 Manihot esculenta HOM05D000162 ORTHO05D000090 1.3e-07 61.6 42 76.2
Manes.09G011668 Manihot esculenta HOM05D000162 ORTHO05D000090 1.3e-07 61.6 42 76.2
C04p29560 Brassica napus HOM05D000162 ORTHO05D021394 1.6e-07 61.2 73 45.2
C04p29600 Brassica napus HOM05D000162 ORTHO05D021394 1.6e-07 61.2 73 45.2
Haze_03424 Corylus avellana HOM05D000027 ORTHO05D000500 2.8e-07 60.5 51 52.9
Ca_26618_v3 Cicer arietinum L. HOM05D031031 ORTHO05D044384 6.3e-07 59.3 74 39.2
MD03G1113200 Malus domestica HOM05D005643 ORTHO05D006819 6.3e-07 59.3 52 48.1
FAN21G2825 Fragaria x ananassa HOM05D000162 ORTHO05D003288 8.2e-07 58.9 42 57.1
Medtr6g079460 Medicago truncatula HOM05D000162 ORTHO05D000090 8.2e-07 58.9 67 44.8
SalBow1G4634 Salvia bowleyana HOM05D042251 ORTHO05D002854 8.2e-07 58.9 83 32.5
vmacro08430 Vaccinium macrocarpon HOM05D010002 ORTHO05D012862 8.2e-07 58.9 64 43.8
Dinv20274 Davidia involucrata HOM05D010002 ORTHO05D012862 1.1e-06 58.5 44 59.1
FAN11G2213 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.1e-06 58.5 59 47.5
Manes.09G014401 Manihot esculenta HOM05D000162 ORTHO05D249413 1.1e-06 58.5 40 77.5
SalBow2G1354 Salvia bowleyana HOM05D000162 ORTHO05D000090 1.1e-06 58.5 57 49.1
Manes.09G011785 Manihot esculenta HOM05D050930 ORTHO05D003288 1.4e-06 58.2 39 76.9
Manes.09G015600 Manihot esculenta HOM05D000162 ORTHO05D000090 1.4e-06 58.2 55 63.6
SHI18058 Sapria himalayana HOM05D006888 ORTHO05D008371 1.8e-06 57.8 53 49.1
Dinv10021 Davidia involucrata HOM05D010002 ORTHO05D012862 2.4e-06 57.4 40 67.5
FAN16G3674 Fragaria x ananassa HOM05D031293 ORTHO05D029478 2.4e-06 57.4 38 63.2
Lj4g0021408 Lotus japonicus HOM05D003900 ORTHO05D015804 2.4e-06 57.4 72 38.9
SHI16834 Sapria himalayana HOM05D007383 ORTHO05D009254 2.4e-06 57.4 66 45.5
vmacro13717 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 2.4e-06 57.4 75 44.0
Dinv20271 Davidia involucrata HOM05D010002 ORTHO05D012862 3.1e-06 57.0 39 64.1
FAN11G1863 Fragaria x ananassa HOM05D000162 ORTHO05D000090 3.1e-06 57.0 41 58.5
Manes.09G011500 Manihot esculenta HOM05D000162 ORTHO05D000090 3.1e-06 57.0 40 72.5
Manes.13G006000 Manihot esculenta HOM05D000162 ORTHO05D000090 3.1e-06 57.0 49 57.1
PSO384G3049 Papaver somniferum HOM05D006842 ORTHO05D008908 3.1e-06 57.0 70 45.7
Manes.09G011604 Manihot esculenta HOM05D000162 ORTHO05D010307 4.1e-06 56.6 61 75.4
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 5.3e-06 56.2 68 42.6
Medtr5g018230 Medicago truncatula HOM05D006503 ORTHO05D008116 5.3e-06 56.2 60 43.3
Atru.BG.247.p Acer truncatum HOM05D007639 ORTHO05D009509 6.9e-06 55.8 63 47.6
Dinv20272 Davidia involucrata HOM05D007170 ORTHO05D009243 6.9e-06 55.8 38 63.2
Glyma.08G254000 Glycine max HOM05D004127 ORTHO05D005119 6.9e-06 55.8 74 37.8
Glyma.18G276500 Glycine max HOM05D004127 ORTHO05D005119 6.9e-06 55.8 74 37.8
Manes.09G011862 Manihot esculenta HOM05D000162 ORTHO05D000090 6.9e-06 55.8 39 71.8
Dinv20260 Davidia involucrata HOM05D010002 ORTHO05D003288 9.0e-06 55.5 43 55.8
FAN25G0292 Fragaria x ananassa HOM05D000162 ORTHO05D000090 9.0e-06 55.5 41 56.1
Medtr0573s0020 Medicago truncatula HOM05D031031 ORTHO05D012481 9.0e-06 55.5 40 57.5
Phvul.008G024400 Phaseolus vulgaris HOM05D004127 ORTHO05D005119 9.0e-06 55.5 69 39.1
QL03p013273 Quercus lobata HOM05D000162 ORTHO05D000090 9.0e-06 55.5 47 46.8


User provided reference genes

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