Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G016732 Manihot esculenta HOM05D007529 ORTHO05D007451 5.0e-148 527.7 257 100.0
Manes.09G016600 Manihot esculenta HOM05D007529 ORTHO05D007451 1.1e-147 526.6 257 99.6
QL07p004579 Quercus lobata HOM05D007529 ORTHO05D007451 1.7e-76 290.0 251 58.2
Potri.006G044801 Populus trichocarpa HOM05D007529 ORTHO05D007451 5.2e-73 278.5 263 53.6
TWI74G0965 Tripterygium wilfordii HOM05D007529 ORTHO05D007451 5.8e-72 275.0 253 55.3
Prupe.7G049500 Prunus persica HOM05D007529 ORTHO05D007451 7.6e-72 274.6 251 55.8
Atru.chr1.1251 Acer truncatum HOM05D007529 ORTHO05D007451 3.5e-69 265.8 247 54.7
MD14G1081300 Malus domestica HOM05D007529 ORTHO05D007451 4.3e-67 258.8 245 53.9
Dinv30288 Davidia involucrata HOM05D007529 ORTHO05D007451 1.1e-65 254.2 247 50.6
Gohir.A01G193700 Gossypium hirsutum HOM05D007529 ORTHO05D007451 7.6e-64 248.1 243 51.0
Nitab4.5_0011420g0010 Nicotiana tabacum HOM05D007529 ORTHO05D007451 7.6e-64 248.1 264 47.7
Gorai.002G227400 Gossypium raimondii HOM05D007529 ORTHO05D007451 1.7e-63 246.9 243 51.4
Sabra06G0031000 Salix brachista HOM05D005255 ORTHO05D006276 1.7e-63 246.9 254 49.6
Eucgr.K01581 Eucalyptus grandis HOM05D007529 ORTHO05D007451 8.4e-63 244.6 245 49.4
COL.COLO4_30902 Corchorus olitorius HOM05D007529 ORTHO05D007451 2.4e-62 243.0 253 49.4
MBI19_g17527_MAGBIO Magnolia biondii HOM05D007529 ORTHO05D007451 2.4e-62 243.0 250 46.8
FvH4_6g24810 Fragaria vesca HOM05D007529 ORTHO05D007451 5.4e-62 241.9 253 51.4
Lalb_Chr02g0156441 Lupinus albus HOM05D007529 ORTHO05D007451 5.4e-62 241.9 258 48.8
Gohir.D01G183900 Gossypium hirsutum HOM05D007529 ORTHO05D007451 7.1e-62 241.5 243 50.6
Lsat_1_v5_gn_5_161020 Lactuca sativa HOM05D007529 ORTHO05D007451 1.2e-61 240.7 262 47.7
Nn2g15054 Nelumbo nucifera HOM05D007529 ORTHO05D007451 1.6e-61 240.4 254 48.0
Nitab4.5_0001618g0110 Nicotiana tabacum HOM05D007529 ORTHO05D007451 1.6e-61 240.4 253 49.0
PGR142G2784 Punica granatum HOM05D007529 ORTHO05D007451 2.1e-61 240.0 260 50.0
Glyma.02G191900 Glycine max HOM05D007529 ORTHO05D007451 2.7e-61 239.6 253 49.0
Ca_23805_v3 Cicer arietinum L. HOM05D007529 ORTHO05D007451 6.0e-61 238.4 257 49.4
Peaxi162Scf00130g00112 Petunia axillaris HOM05D007529 ORTHO05D007451 1.0e-60 237.7 248 48.4
ECA248G1753 Erigeron canadensis HOM05D007529 ORTHO05D007451 1.7e-60 236.9 250 46.8
HanXRQChr17g0545881 Helianthus annuus HOM05D007529 ORTHO05D007451 3.0e-60 236.1 264 46.6
FAN17G0712 Fragaria x ananassa HOM05D007529 ORTHO05D007451 5.6e-59 231.9 266 47.4
SalBow1G4167 Salvia bowleyana HOM05D007529 ORTHO05D007451 9.6e-59 231.1 250 44.8
Haze_19755 Corylus avellana HOM05D007529 ORTHO05D007451 3.6e-58 229.2 237 50.2
Migut.K00115 Erythranthe guttata HOM05D007529 ORTHO05D007451 4.8e-58 228.8 255 45.9
CANSAT80G2089 Cannabis sativa HOM05D007529 ORTHO05D007451 6.2e-58 228.4 251 47.8
Medtr1g041810 Medicago truncatula HOM05D007529 ORTHO05D007451 8.1e-58 228.0 252 48.0
VMungo0720G2145 Vigna mungo HOM05D007529 ORTHO05D007451 8.1e-58 228.0 244 48.4
Actinidia38146 Actinidia chinensis HOM05D000001 ORTHO05D009995 1.1e-57 227.6 246 48.4
Cfa016748 Carpinus fangiana HOM05D002613 ORTHO05D003140 1.4e-57 227.3 229 52.8
ClCG04G003960 Citrullus lanatus HOM05D007529 ORTHO05D007451 1.8e-57 226.9 268 45.1
Sc19g0008410 Simmondsia chinensis HOM05D007529 ORTHO05D007451 1.8e-57 226.9 264 48.5
RcHm_v2.0_Chr3g0484581 Rosa chinensis HOM05D007529 ORTHO05D007451 2.4e-57 226.5 245 50.2
Sopen04g008750 Solanum pennellii HOM05D007529 ORTHO05D007451 2.4e-57 226.5 276 44.9
TPR.G19652 Trifolium pratense HOM05D007529 ORTHO05D007451 3.1e-57 226.1 259 46.7
FvH4_4g15460 Fragaria vesca HOM05D007529 ORTHO05D007451 4.0e-57 225.7 265 47.2
Solyc04g017670.3 Solanum lycopersicum HOM05D007529 ORTHO05D007451 1.2e-56 224.2 275 44.7
FAN12G3128 Fragaria x ananassa HOM05D007529 ORTHO05D007451 1.5e-56 223.8 265 47.2
CsaV3_4G021910 Cucumis sativus L. HOM05D007529 ORTHO05D007451 4.5e-56 222.2 280 43.2
FAN22G0252 Fragaria x ananassa HOM05D007529 ORTHO05D007451 5.8e-56 221.9 266 45.5
CANSAT80G1192 Cannabis sativa HOM05D007529 ORTHO05D007451 7.6e-56 221.5 253 46.2
FAN14G0143 Fragaria x ananassa HOM05D007529 ORTHO05D007451 1.4e-54 217.2 233 51.1
Sed0023165 Sechium edule HOM05D007529 ORTHO05D007451 1.9e-54 216.9 268 44.8
HanXRQChr01g0008291 Helianthus annuus HOM05D007529 ORTHO05D007451 6.0e-53 211.8 258 44.2
Ciclev10006854m.g Citrus clementina HOM05D007529 ORTHO05D007451 1.3e-52 210.7 250 46.8
MELO3C014209.2 Cucumis melo HOM05D007529 ORTHO05D007451 3.0e-52 209.5 279 41.2
EL10Ac3g07171 Beta vulgaris HOM05D007529 ORTHO05D007451 6.7e-52 208.4 259 44.4
FAN22G0851 Fragaria x ananassa HOM05D007529 ORTHO05D007451 5.6e-51 205.3 256 46.1
PSO384G2280 Papaver somniferum HOM05D007529 ORTHO05D007451 1.3e-50 204.1 274 40.5
Potri.004G076800 Populus trichocarpa HOM05D007529 ORTHO05D007451 1.5e-48 197.2 264 42.0
FAN07G2804 Fragaria x ananassa HOM05D007529 ORTHO05D007451 2.0e-48 196.8 243 46.1
AUR62030393 Chenopodium quinoa HOM05D007529 ORTHO05D007451 9.9e-48 194.5 253 44.7
Phvul.007G249000 Phaseolus vulgaris HOM05D007529 ORTHO05D007451 9.3e-46 188.0 209 48.3
Oeu008184.2 Olea europaea HOM05D005255 ORTHO05D006276 3.5e-45 186.0 208 45.7
Ah.13g076730 Amaranthus hybridus HOM05D007529 ORTHO05D007451 7.9e-45 184.9 249 41.0
DCAR_013619 Daucus carota HOM05D007529 ORTHO05D007451 1.5e-43 180.6 275 38.9
Cc06_g18420 Coffea canephora HOM05D007529 ORTHO05D007451 2.1e-42 176.8 258 39.5
FvH4_4g15570 Fragaria vesca HOM05D007529 ORTHO05D007451 8.2e-42 174.9 199 47.2
SGA_v2.0_scaffold21G09330 Striga asiatica HOM05D007529 ORTHO05D007451 1.1e-41 174.5 265 38.1
Haze_19770 Corylus avellana HOM05D007529 ORTHO05D007451 2.2e-39 166.8 173 52.0
CiPaw.09G042800 Carya illinoinensis HOM05D007529 ORTHO05D007451 6.5e-39 165.2 261 41.0
HPP92_011341 Vanilla planifolia HOM05D007529 ORTHO05D007451 1.9e-38 163.7 266 39.1
Aqoxy7G01198 Aquilegia oxysepala HOM05D007529 ORTHO05D007451 2.1e-37 160.2 216 38.9
Nn1g04791 Nelumbo nucifera HOM05D007529 ORTHO05D007451 6.0e-37 158.7 256 36.3
Sabra04G0050900 Salix brachista HOM05D007529 ORTHO05D007451 7.9e-37 158.3 230 37.8
THA.LOC104825175 Tarenaya hassleriana HOM05D007529 ORTHO05D007451 7.9e-37 158.3 252 38.5
FvH4_2g38461 Fragaria vesca HOM05D007529 ORTHO05D007451 8.7e-36 154.8 190 48.4
Nitab4.5_0005195g0010 Nicotiana tabacum HOM05D007529 ORTHO05D007451 3.7e-34 149.4 268 36.2
THA.LOC104816403 Tarenaya hassleriana HOM05D007529 ORTHO05D007451 1.1e-33 147.9 267 35.6
Nitab4.5_0000826g0010 Nicotiana tabacum HOM05D007529 ORTHO05D007451 7.2e-30 135.2 159 42.8
Carub.0006s0294 Capsella rubella HOM05D005503 ORTHO05D007451 3.1e-25 119.8 258 31.8
unitig_899.g15088 Utricularia gibba HOM05D007529 ORTHO05D007451 6.9e-25 118.6 170 38.2
AL6G13600 Arabidopsis lyrata HOM05D005503 ORTHO05D007451 3.4e-24 116.3 250 32.0
CDE11G0566 Ceratophyllum demersum HOM05D007529 ORTHO05D007451 3.4e-24 116.3 171 35.1
Potri.004G077301 Populus trichocarpa HOM05D007529 ORTHO05D007451 5.9e-24 115.5 162 40.1
AT5G04010 Arabidopsis thaliana HOM05D005503 ORTHO05D007451 1.0e-23 114.8 249 31.7
HPP92_011264 Vanilla planifolia HOM05D007529 ORTHO05D007451 1.3e-23 114.4 196 38.8
CARHR209270 Cardamine hirsuta HOM05D005503 ORTHO05D007451 6.5e-23 112.1 257 30.4
Nn1g01084 Nelumbo nucifera HOM05D007529 ORTHO05D007451 2.5e-22 110.2 99 51.5
arahy.Tifrunner.gnm1.ann1.5P9T4R Arachis hypogaea HOM05D007529 ORTHO05D007451 4.2e-22 109.4 118 47.5
AUR62026141 Chenopodium quinoa HOM05D007529 ORTHO05D007451 1.6e-21 107.5 139 43.2
Aa31LG6G5380 Aethionema arabicum HOM05D005503 ORTHO05D007451 2.7e-21 106.7 250 29.6
THA.LOC104825174 Tarenaya hassleriana HOM05D007529 ORTHO05D007451 4.6e-21 105.9 122 41.0
Aa31LG6G5360 Aethionema arabicum HOM05D005503 ORTHO05D007451 8.8e-20 101.7 265 27.9
FAN17G2871 Fragaria x ananassa HOM05D007529 ORTHO05D011815 4.4e-19 99.4 107 45.8
FAN12G3498 Fragaria x ananassa HOM05D007529 ORTHO05D007451 5.7e-19 99.0 169 39.1
SEGI_22599 Sequoiadendron giganteum HOM05D007529 ORTHO05D007451 9.7e-19 98.2 258 30.6
Psat6g093280 Pisum sativum HOM05D007529 ORTHO05D007451 1.3e-18 97.8 115 44.3
Zm00001eb150670 Zea mays HOM05D007529 ORTHO05D007451 2.8e-18 96.7 275 28.7
Thhalv10015413m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 9.1e-17 91.7 262 28.2
Thhalv10027472m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 9.1e-17 91.7 250 28.8
Cpa.g.sc5.217 Carica papaya HOM05D007529 ORTHO05D007451 5.9e-16 89.0 79 54.4
Thhalv10027188m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 1.0e-15 88.2 253 30.0
Thhalv10015674m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 1.3e-15 87.8 248 29.4
Os01g0800900 Oryza sativa ssp. japonica HOM05D007529 ORTHO05D007451 1.7e-15 87.4 272 30.9
Sp6g38750 Schrenkiella parvula HOM05D005503 ORTHO05D007451 2.2e-15 87.0 251 29.1
BraA10t45255Z Brassica rapa HOM05D005503 ORTHO05D008949 3.8e-15 86.3 254 28.0
Thhalv10023018m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 3.8e-15 86.3 249 28.5
FvH4_4g15602 Fragaria vesca HOM05D007529 ORTHO05D007451 6.5e-15 85.5 170 37.1
C08p39580 Brassica napus HOM05D005503 ORTHO05D007451 2.5e-14 83.6 253 29.6
BcaC07g40964 Brassica carinata HOM05D005503 ORTHO05D007451 1.2e-13 81.3 253 29.2
BcaC02g08721 Brassica carinata HOM05D005503 ORTHO05D007451 2.1e-13 80.5 264 28.0
A10p32120 Brassica napus HOM05D005503 ORTHO05D008949 2.1e-13 80.5 251 27.9
C04p51340 Brassica napus HOM05D005503 ORTHO05D007451 2.1e-13 80.5 262 28.2
SMO340G0132 Selaginella moellendorffii HOM05D027965 ORTHO05D007451 2.1e-13 80.5 293 26.3
A09p56430 Brassica napus HOM05D005503 ORTHO05D007451 2.7e-13 80.1 251 27.9
BraA09t41037Z Brassica rapa HOM05D005503 ORTHO05D007451 2.7e-13 80.1 251 27.9
ClCG04G003940 Citrullus lanatus HOM05D007529 ORTHO05D007451 3.6e-13 79.7 79 49.4
BolC4t26724H Brassica oleracea HOM05D005503 ORTHO05D007451 7.9e-13 78.6 264 28.8
A09p56630 Brassica napus HOM05D005503 ORTHO05D007451 1.0e-12 78.2 251 27.9
BraA09t41054Z Brassica rapa HOM05D005503 ORTHO05D007451 1.0e-12 78.2 251 27.9
C08p39400 Brassica napus HOM05D005503 ORTHO05D007451 1.4e-12 77.8 251 28.3
FAN22G2112 Fragaria x ananassa HOM05D007529 ORTHO05D007451 1.8e-12 77.4 85 50.6
Cpa.g.sc5.218 Carica papaya HOM05D007529 ORTHO05D007451 3.9e-12 76.3 68 50.0
C09p72840 Brassica napus HOM05D005503 ORTHO05D008949 1.5e-11 74.3 251 26.7
BolC9t60020H Brassica oleracea HOM05D005503 ORTHO05D008949 1.5e-11 74.3 251 26.7
CsaV3_4G021970 Cucumis sativus L. HOM05D007529 ORTHO05D007451 2.0e-11 73.9 75 48.0
MELO3C014210.2 Cucumis melo HOM05D007529 ORTHO05D007451 2.6e-11 73.6 77 48.1
BcaC07g40948 Brassica carinata HOM05D005503 ORTHO05D007451 4.4e-11 72.8 255 28.2
BolC8t51514H Brassica oleracea HOM05D005503 ORTHO05D007451 4.4e-11 72.8 255 28.2
BcaC06g32102 Brassica carinata HOM05D005503 ORTHO05D008949 2.8e-10 70.1 246 25.6
FAN17G0844 Fragaria x ananassa HOM05D007529 ORTHO05D007451 1.8e-09 67.4 98 38.8
BolC8t51531H Brassica oleracea HOM05D005503 ORTHO05D007451 1.6e-08 64.3 166 30.7
PGR083G1582 Punica granatum HOM05D006599 ORTHO05D008304 3.8e-07 59.7 109 35.8
Ciclev10012597m.g Citrus clementina HOM05D006599 ORTHO05D008304 1.5e-06 57.8 110 33.6
PSO478G2235 Papaver somniferum HOM05D006599 ORTHO05D008304 1.5e-06 57.8 112 31.2
Duzib147G0316 Durio zibethinus HOM05D006599 ORTHO05D008304 3.2e-06 56.6 110 32.7
Gohir.A11G072300 Gossypium hirsutum HOM05D006599 ORTHO05D008304 5.5e-06 55.8 111 31.5
Gohir.D11G076400 Gossypium hirsutum HOM05D006599 ORTHO05D008304 5.5e-06 55.8 111 31.5
Gorai.007G082000 Gossypium raimondii HOM05D006599 ORTHO05D008304 5.5e-06 55.8 111 31.5
QL02p067958 Quercus lobata HOM05D006599 ORTHO05D008304 5.5e-06 55.8 110 32.7
Rhsim08G0074600 Rhododendron simsii HOM05D006599 ORTHO05D008304 5.5e-06 55.8 111 32.4
TAR629G1530 Trochodendron aralioides HOM05D006599 ORTHO05D008304 5.5e-06 55.8 106 33.0
arahy.Tifrunner.gnm1.ann1.24WTBT Arachis hypogaea HOM05D006599 ORTHO05D008304 7.2e-06 55.5 110 32.7
PSO017G0459 Papaver somniferum HOM05D006599 ORTHO05D008304 7.2e-06 55.5 112 31.2
Potri.004G119500 Populus trichocarpa HOM05D006599 ORTHO05D008304 7.2e-06 55.5 106 30.2
Sabra04G0069000 Salix brachista HOM05D006599 ORTHO05D008304 7.2e-06 55.5 109 31.2
AagrBONN_evm.TU.Sc2ySwM_368.1069 Anthoceros agrestis HOM05D027965 ORTHO05D007451 9.4e-06 55.1 285 22.1
CANSAT64G1926 Cannabis sativa HOM05D006599 ORTHO05D008304 9.4e-06 55.1 110 31.8
Medtr7g013160 Medicago truncatula HOM05D006599 ORTHO05D008304 9.4e-06 55.1 111 34.2
Nn4g23391 Nelumbo nucifera HOM05D006599 ORTHO05D008304 9.4e-06 55.1 106 31.1


User provided reference genes

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