Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G016680 Manihot esculenta HOM05D000162 ORTHO05D003288 6.7e-37 156.8 75 100.0
Manes.09G017000 Manihot esculenta HOM05D000162 ORTHO05D000090 3.3e-20 101.3 55 94.5
Manes.09G015400 Manihot esculenta HOM05D000162 ORTHO05D000090 7.4e-20 100.1 55 94.5
Manes.09G016766 Manihot esculenta HOM05D010002 ORTHO05D012862 1.3e-19 99.4 56 92.9
Manes.09G016759 Manihot esculenta HOM05D000162 ORTHO05D000090 4.8e-19 97.4 55 90.9
Manes.09G016699 Manihot esculenta HOM05D000162 ORTHO05D000090 6.3e-19 97.1 53 94.3
Manes.09G016622 Manihot esculenta HOM05D000162 ORTHO05D000090 8.2e-19 96.7 52 94.2
Manes.09G016738 Manihot esculenta HOM05D000162 ORTHO05D000090 8.2e-19 96.7 52 94.2
Manes.09G015250 Manihot esculenta HOM05D000162 ORTHO05D000090 1.1e-18 96.3 55 92.7
Manes.09G016677 Manihot esculenta HOM05D000162 ORTHO05D000090 1.8e-18 95.5 50 94.0
Manes.09G014741 Manihot esculenta HOM05D000162 ORTHO05D000090 3.1e-18 94.7 51 96.1
Manes.09G014860 Manihot esculenta HOM05D000162 ORTHO05D000090 5.3e-18 94.0 53 92.5
Manes.09G011660 Manihot esculenta HOM05D000162 ORTHO05D000090 1.2e-17 92.8 49 98.0
Manes.07G067738 Manihot esculenta HOM05D000162 ORTHO05D003288 1.6e-17 92.4 52 90.4
Manes.09G014621 Manihot esculenta HOM05D000162 ORTHO05D003288 2.0e-17 92.0 53 94.3
Manes.09G016769 Manihot esculenta HOM05D000162 ORTHO05D000090 2.6e-17 91.7 51 92.2
Manes.09G011624 Manihot esculenta HOM05D000162 ORTHO05D000090 3.5e-17 91.3 52 92.3
Manes.09G011844 Manihot esculenta HOM05D000162 ORTHO05D000090 3.5e-17 91.3 49 95.9
Manes.09G016800 Manihot esculenta HOM05D000162 ORTHO05D000090 5.9e-17 90.5 49 95.9
Manes.09G011709 Manihot esculenta HOM05D000162 ORTHO05D000090 7.7e-17 90.1 51 92.2
Manes.09G011620 Manihot esculenta HOM05D000162 ORTHO05D000090 1.0e-16 89.7 50 92.0
Manes.09G016688 Manihot esculenta HOM05D000162 ORTHO05D000090 1.0e-16 89.7 48 93.8
Manes.09G016900 Manihot esculenta HOM05D000162 ORTHO05D000090 2.9e-16 88.2 47 97.9
Manes.09G012500 Manihot esculenta HOM05D000162 ORTHO05D000090 3.8e-16 87.8 47 93.6
Manes.09G013700 Manihot esculenta HOM05D000162 ORTHO05D003288 8.5e-16 86.7 46 97.8
Manes.09G011835 Manihot esculenta HOM05D000162 ORTHO05D000090 1.1e-15 86.3 50 92.0
Manes.09G012300 Manihot esculenta HOM05D000162 ORTHO05D000090 2.5e-15 85.1 45 93.3
Manes.09G011763 Manihot esculenta HOM05D000162 ORTHO05D000090 4.2e-15 84.3 50 84.0
Manes.09G016747 Manihot esculenta HOM05D000162 ORTHO05D000090 7.2e-15 83.6 52 86.5
Manes.09G013600 Manihot esculenta HOM05D000162 ORTHO05D003288 9.4e-15 83.2 50 84.0
Manes.07G067700 Manihot esculenta HOM05D000162 ORTHO05D000090 1.2e-14 82.8 52 86.5
Manes.09G011401 Manihot esculenta HOM05D000162 ORTHO05D000090 1.2e-14 82.8 50 84.0
Manes.09G016787 Manihot esculenta HOM05D000162 ORTHO05D003288 1.2e-14 82.8 53 83.0
Manes.09G011961 Manihot esculenta HOM05D000162 ORTHO05D000090 2.1e-14 82.0 51 82.4
Manes.09G018580 Manihot esculenta HOM05D000162 ORTHO05D000090 2.1e-14 82.0 47 85.1
Manes.09G016762 Manihot esculenta HOM05D000162 ORTHO05D000090 2.7e-14 81.6 46 91.3
Manes.09G011300 Manihot esculenta HOM05D000162 ORTHO05D000090 4.7e-14 80.9 48 85.4
Manes.09G011701 Manihot esculenta HOM05D000162 ORTHO05D000090 6.1e-14 80.5 48 85.4
Manes.09G011799 Manihot esculenta HOM05D000162 ORTHO05D000090 8.0e-14 80.1 50 82.0
Manes.09G017401 Manihot esculenta HOM05D000162 ORTHO05D000090 2.3e-13 78.6 43 95.3
Manes.09G016772 Manihot esculenta HOM05D000162 ORTHO05D000090 3.0e-13 78.2 51 82.4
Manes.09G011640 Manihot esculenta HOM05D000162 ORTHO05D000090 4.0e-13 77.8 43 90.7
Manes.09G011632 Manihot esculenta HOM05D000162 ORTHO05D000090 6.8e-13 77.0 49 81.6
Manes.09G011652 Manihot esculenta HOM05D000162 ORTHO05D000090 1.5e-12 75.9 40 97.5
Manes.09G011889 Manihot esculenta HOM05D000162 ORTHO05D000090 1.5e-12 75.9 49 81.6
Manes.09G013802 Manihot esculenta HOM05D000162 ORTHO05D000090 2.0e-12 75.5 41 92.7
Manes.09G014301 Manihot esculenta HOM05D000162 ORTHO05D000090 2.0e-12 75.5 49 79.6
Manes.07G130500 Manihot esculenta HOM05D000162 ORTHO05D010307 4.4e-12 74.3 49 75.5
Manes.09G013901 Manihot esculenta HOM05D000162 ORTHO05D000090 4.4e-12 74.3 41 92.7
Manes.09G018520 Manihot esculenta HOM05D000162 ORTHO05D000090 9.7e-12 73.2 41 90.2
Manes.09G011772 Manihot esculenta HOM05D000162 ORTHO05D000090 1.3e-11 72.8 40 87.5
Manes.09G011898 Manihot esculenta HOM05D000162 ORTHO05D000090 1.7e-11 72.4 43 86.0
Manes.09G016655 Manihot esculenta HOM05D000162 ORTHO05D000090 2.2e-11 72.0 38 94.7
Manes.09G016750 Manihot esculenta HOM05D000162 ORTHO05D000090 2.8e-11 71.6 46 84.8
Manes.12G004700 Manihot esculenta HOM05D000162 ORTHO05D000090 2.8e-11 71.6 52 69.2
Manes.09G011644 Manihot esculenta HOM05D000162 ORTHO05D000090 4.8e-11 70.9 38 94.7
Manes.09G011692 Manihot esculenta HOM05D031066 ORTHO05D250969 4.8e-11 70.9 40 90.0
Manes.09G011925 Manihot esculenta HOM05D000162 ORTHO05D000090 4.8e-11 70.9 48 75.0
Manes.09G016744 Manihot esculenta HOM05D000162 ORTHO05D000090 6.3e-11 70.5 39 89.7
Manes.09G011628 Manihot esculenta HOM05D000162 ORTHO05D000090 1.1e-10 69.7 39 92.3
Manes.09G011648 Manihot esculenta HOM05D000162 ORTHO05D000090 1.1e-10 69.7 39 92.3
Manes.09G011943 Manihot esculenta HOM05D000162 ORTHO05D000090 1.1e-10 69.7 39 92.3
Manes.09G011616 Manihot esculenta HOM05D000162 ORTHO05D000090 1.4e-10 69.3 42 83.3
Manes.09G011668 Manihot esculenta HOM05D000162 ORTHO05D000090 1.4e-10 69.3 42 83.3
Manes.09G012700 Manihot esculenta HOM05D000162 ORTHO05D000090 1.8e-10 68.9 38 92.1
Manes.09G014401 Manihot esculenta HOM05D000162 ORTHO05D249413 7.0e-10 67.0 40 85.0
Manes.09G011680 Manihot esculenta HOM05D000162 ORTHO05D000090 1.6e-09 65.9 35 97.1
Manes.09G011902 Manihot esculenta HOM05D000162 ORTHO05D000090 1.6e-09 65.9 33 97.0
Manes.09G015100 Manihot esculenta HOM05D000162 ORTHO05D000090 2.0e-09 65.5 38 89.5
Prupe.6G195700 Prunus persica HOM05D009709 ORTHO05D003288 2.7e-09 65.1 54 50.0
Manes.09G011500 Manihot esculenta HOM05D000162 ORTHO05D000090 4.5e-09 64.3 40 80.0
Manes.09G011684 Manihot esculenta HOM05D000162 ORTHO05D000090 4.5e-09 64.3 40 82.5
RcHm_v2.0_Chr5g0069571 Rosa chinensis HOM05D009709 ORTHO05D010307 4.5e-09 64.3 75 45.3
FAN05G4416 Fragaria x ananassa HOM05D009709 ORTHO05D003288 5.9e-09 63.9 54 50.0
Manes.09G011862 Manihot esculenta HOM05D000162 ORTHO05D000090 1.0e-08 63.2 39 79.5
RcHm_v2.0_Chr5g0078611 Rosa chinensis HOM05D009709 ORTHO05D003288 1.3e-08 62.8 69 46.4
Manes.09G011688 Manihot esculenta HOM05D000162 ORTHO05D000090 2.2e-08 62.0 38 81.6
Manes.09G011736 Manihot esculenta HOM05D000162 ORTHO05D000090 2.2e-08 62.0 38 81.6
Manes.09G011934 Manihot esculenta HOM05D000162 ORTHO05D000090 2.2e-08 62.0 38 84.2
Manes.09G016611 Manihot esculenta HOM05D000162 ORTHO05D000090 2.9e-08 61.6 41 80.5
Gorai.009G377200 Gossypium raimondii HOM05D012722 ORTHO05D029832 3.8e-08 61.2 54 50.0
RcHm_v2.0_Chr5g0072871 Rosa chinensis HOM05D009709 ORTHO05D003288 3.8e-08 61.2 64 45.3
FAN21G0792 Fragaria x ananassa HOM05D000027 ORTHO05D001163 6.5e-08 60.5 77 42.9
FAN21G0960 Fragaria x ananassa HOM05D000027 ORTHO05D001163 6.5e-08 60.5 77 42.9
Manes.09G012000 Manihot esculenta HOM05D000162 ORTHO05D000090 6.5e-08 60.5 37 83.8
Gorai.009G378000 Gossypium raimondii HOM05D009709 ORTHO05D003288 8.5e-08 60.1 54 50.0
Manes.09G011785 Manihot esculenta HOM05D050930 ORTHO05D003288 8.5e-08 60.1 39 79.5
Manes.13G006000 Manihot esculenta HOM05D000162 ORTHO05D000090 8.5e-08 60.1 49 59.2
EL10Ac4g09866 Beta vulgaris HOM05D000162 ORTHO05D000090 1.5e-07 59.3 60 48.3
Potri.005G046050 Populus trichocarpa HOM05D009709 ORTHO05D003288 1.5e-07 59.3 61 44.3
RcHm_v2.0_Chr5g0074961 Rosa chinensis HOM05D009709 ORTHO05D003288 1.9e-07 58.9 65 43.1
CAN.G389.6 Capsicum annuum HOM05D011051 ORTHO05D003288 2.5e-07 58.5 65 35.4
FvH4_3g31580 Fragaria vesca HOM05D009709 ORTHO05D003288 2.5e-07 58.5 54 46.3
FAN16G2854 Fragaria x ananassa HOM05D009709 ORTHO05D003288 2.5e-07 58.5 63 39.7
Manes.12G004500 Manihot esculenta HOM05D000162 ORTHO05D000090 2.5e-07 58.5 38 76.3
Migut.G01184 Erythranthe guttata HOM05D000162 ORTHO05D000090 3.2e-07 58.2 53 45.3
FAN21G2825 Fragaria x ananassa HOM05D000162 ORTHO05D003288 3.2e-07 58.2 54 44.4
Dinv20260 Davidia involucrata HOM05D010002 ORTHO05D003288 4.2e-07 57.8 55 49.1
Migut.G01185 Erythranthe guttata HOM05D022251 ORTHO05D003288 4.2e-07 57.8 69 42.0
FAN25G2751 Fragaria x ananassa HOM05D009709 ORTHO05D003288 4.2e-07 57.8 54 48.1
Nitab4.5_0003318g0150 Nicotiana tabacum HOM05D011051 ORTHO05D003288 4.2e-07 57.8 59 42.4
Manes.09G012900 Manihot esculenta HOM05D000162 ORTHO05D000090 5.5e-07 57.4 38 76.3
FAN18G0982 Fragaria x ananassa HOM05D009709 ORTHO05D003288 9.4e-07 56.6 54 44.4
CSS0026088 Camellia sinensis var. sinensis HOM05D009709 ORTHO05D003288 1.2e-06 56.2 59 42.4
Manes.09G011604 Manihot esculenta HOM05D000162 ORTHO05D010307 1.6e-06 55.8 36 77.8
arahy.Tifrunner.gnm1.ann1.M2HM0V Arachis hypogaea HOM05D018308 ORTHO05D003288 2.1e-06 55.5 58 44.8
EL10Ac4g09814 Beta vulgaris HOM05D000162 ORTHO05D000090 2.1e-06 55.5 54 46.3
Solyc06g007270.1 Solanum lycopersicum HOM05D011051 ORTHO05D003288 2.7e-06 55.1 65 35.4
Migut.G01194 Erythranthe guttata HOM05D000162 ORTHO05D000090 3.6e-06 54.7 47 48.9
QL03p013262 Quercus lobata HOM05D000162 ORTHO05D000090 3.6e-06 54.7 63 41.3
Manes.09G015600 Manihot esculenta HOM05D000162 ORTHO05D000090 4.7e-06 54.3 55 61.8
Peaxi162Scf00273g01010 Petunia axillaris HOM05D001400 ORTHO05D003288 4.7e-06 54.3 73 34.2
PGSC0003DMG400020554 Solanum tuberosum HOM05D011051 ORTHO05D003288 4.7e-06 54.3 65 32.3
Manes.09G011672 Manihot esculenta HOM05D000162 ORTHO05D000090 6.1e-06 53.9 36 77.8
Manes.09G011727 Manihot esculenta HOM05D000162 ORTHO05D000090 6.1e-06 53.9 27 92.6
Manes.09G014001 Manihot esculenta HOM05D000162 ORTHO05D000090 6.1e-06 53.9 36 77.8
Solyc06g007260.1 Solanum lycopersicum HOM05D011051 ORTHO05D003288 8.0e-06 53.5 58 34.5


User provided reference genes

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