Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G016600 Manihot esculenta HOM05D007529 ORTHO05D007451 2.0e-183 645.6 315 100.0
Manes.09G016732 Manihot esculenta HOM05D007529 ORTHO05D007451 1.4e-147 526.6 257 99.6
QL07p004579 Quercus lobata HOM05D007529 ORTHO05D007451 3.6e-76 289.3 251 58.2
Potri.006G044801 Populus trichocarpa HOM05D007529 ORTHO05D007451 3.8e-73 279.3 269 53.5
TWI74G0965 Tripterygium wilfordii HOM05D007529 ORTHO05D007451 1.2e-71 274.2 253 55.3
Prupe.7G049500 Prunus persica HOM05D007529 ORTHO05D007451 1.6e-71 273.9 251 55.8
Atru.chr1.1251 Acer truncatum HOM05D007529 ORTHO05D007451 7.3e-69 265.0 247 54.7
MD14G1081300 Malus domestica HOM05D007529 ORTHO05D007451 6.9e-67 258.5 245 53.9
Dinv30288 Davidia involucrata HOM05D007529 ORTHO05D007451 1.7e-65 253.8 247 50.6
Gohir.A01G193700 Gossypium hirsutum HOM05D007529 ORTHO05D007451 1.6e-63 247.3 243 51.0
Nitab4.5_0011420g0010 Nicotiana tabacum HOM05D007529 ORTHO05D007451 1.6e-63 247.3 264 47.7
Sabra06G0031000 Salix brachista HOM05D005255 ORTHO05D006276 2.1e-63 246.9 259 48.6
Gorai.002G227400 Gossypium raimondii HOM05D007529 ORTHO05D007451 3.5e-63 246.1 243 51.4
Eucgr.K01581 Eucalyptus grandis HOM05D007529 ORTHO05D007451 1.8e-62 243.8 245 49.4
COL.COLO4_30902 Corchorus olitorius HOM05D007529 ORTHO05D007451 5.1e-62 242.3 253 49.4
MBI19_g17527_MAGBIO Magnolia biondii HOM05D007529 ORTHO05D007451 5.1e-62 242.3 250 46.8
FvH4_6g24810 Fragaria vesca HOM05D007529 ORTHO05D007451 8.7e-62 241.5 253 51.4
Lalb_Chr02g0156441 Lupinus albus HOM05D007529 ORTHO05D007451 8.7e-62 241.5 258 48.8
Gohir.D01G183900 Gossypium hirsutum HOM05D007529 ORTHO05D007451 1.5e-61 240.7 243 50.6
Nn2g15054 Nelumbo nucifera HOM05D007529 ORTHO05D007451 2.5e-61 240.0 254 48.0
Lsat_1_v5_gn_5_161020 Lactuca sativa HOM05D007529 ORTHO05D007451 3.3e-61 239.6 262 47.3
Nitab4.5_0001618g0110 Nicotiana tabacum HOM05D007529 ORTHO05D007451 3.3e-61 239.6 253 49.0
Glyma.02G191900 Glycine max HOM05D007529 ORTHO05D007451 4.3e-61 239.2 253 49.0
PGR142G2784 Punica granatum HOM05D007529 ORTHO05D007451 4.3e-61 239.2 260 49.6
Ca_23805_v3 Cicer arietinum L. HOM05D007529 ORTHO05D007451 9.6e-61 238.0 257 49.4
Peaxi162Scf00130g00112 Petunia axillaris HOM05D007529 ORTHO05D007451 2.1e-60 236.9 248 48.4
ECA248G1753 Erigeron canadensis HOM05D007529 ORTHO05D007451 4.8e-60 235.7 250 46.4
HanXRQChr17g0545881 Helianthus annuus HOM05D007529 ORTHO05D007451 6.2e-60 235.3 264 46.6
FAN17G0712 Fragaria x ananassa HOM05D007529 ORTHO05D007451 1.2e-58 231.1 266 47.4
SalBow1G4167 Salvia bowleyana HOM05D007529 ORTHO05D007451 2.0e-58 230.3 250 44.8
Haze_19755 Corylus avellana HOM05D007529 ORTHO05D007451 5.8e-58 228.8 237 50.2
Migut.K00115 Erythranthe guttata HOM05D007529 ORTHO05D007451 7.6e-58 228.4 255 45.9
FvH4_4g15460 Fragaria vesca HOM05D007529 ORTHO05D007451 9.9e-58 228.0 270 46.7
CANSAT80G2089 Cannabis sativa HOM05D007529 ORTHO05D007451 1.3e-57 227.6 251 47.8
Medtr1g041810 Medicago truncatula HOM05D007529 ORTHO05D007451 1.7e-57 227.3 252 48.0
VMungo0720G2145 Vigna mungo HOM05D007529 ORTHO05D007451 1.7e-57 227.3 244 48.4
Actinidia38146 Actinidia chinensis HOM05D000001 ORTHO05D009995 2.2e-57 226.9 246 48.4
Cfa016748 Carpinus fangiana HOM05D002613 ORTHO05D003140 2.2e-57 226.9 229 52.8
ClCG04G003960 Citrullus lanatus HOM05D007529 ORTHO05D007451 2.9e-57 226.5 268 45.1
Sc19g0008410 Simmondsia chinensis HOM05D007529 ORTHO05D007451 2.9e-57 226.5 264 48.5
Sopen04g008750 Solanum pennellii HOM05D007529 ORTHO05D007451 3.8e-57 226.1 276 44.9
RcHm_v2.0_Chr3g0484581 Rosa chinensis HOM05D007529 ORTHO05D007451 4.9e-57 225.7 245 50.2
TPR.G19652 Trifolium pratense HOM05D007529 ORTHO05D007451 4.9e-57 225.7 259 46.7
FAN12G3128 Fragaria x ananassa HOM05D007529 ORTHO05D007451 1.9e-56 223.8 268 46.6
Solyc04g017670.3 Solanum lycopersicum HOM05D007529 ORTHO05D007451 1.9e-56 223.8 275 44.7
CsaV3_4G021910 Cucumis sativus L. HOM05D007529 ORTHO05D007451 7.1e-56 221.9 283 42.4
FAN22G0252 Fragaria x ananassa HOM05D007529 ORTHO05D007451 7.1e-56 221.9 267 45.3
CANSAT80G1192 Cannabis sativa HOM05D007529 ORTHO05D007451 1.6e-55 220.7 253 46.2
FAN14G0143 Fragaria x ananassa HOM05D007529 ORTHO05D007451 2.3e-54 216.9 233 51.1
Sed0023165 Sechium edule HOM05D007529 ORTHO05D007451 3.9e-54 216.1 268 44.8
HanXRQChr01g0008291 Helianthus annuus HOM05D007529 ORTHO05D007451 9.6e-53 211.5 258 44.2
EL10Ac3g07171 Beta vulgaris HOM05D007529 ORTHO05D007451 2.8e-52 209.9 259 44.8
Ciclev10006854m.g Citrus clementina HOM05D007529 ORTHO05D007451 2.8e-52 209.9 250 46.8
MELO3C014209.2 Cucumis melo HOM05D007529 ORTHO05D007451 6.2e-52 208.8 282 40.4
FAN22G0851 Fragaria x ananassa HOM05D007529 ORTHO05D007451 1.2e-50 204.5 256 46.1
PSO384G2280 Papaver somniferum HOM05D007529 ORTHO05D007451 2.0e-50 203.8 274 40.5
Potri.004G076800 Populus trichocarpa HOM05D007529 ORTHO05D007451 6.5e-49 198.7 280 41.4
FAN07G2804 Fragaria x ananassa HOM05D007529 ORTHO05D007451 1.9e-48 197.2 244 45.9
AUR62030393 Chenopodium quinoa HOM05D007529 ORTHO05D007451 4.2e-48 196.1 253 45.1
Phvul.007G249000 Phaseolus vulgaris HOM05D007529 ORTHO05D007451 1.9e-45 187.2 209 48.3
Oeu008184.2 Olea europaea HOM05D005255 ORTHO05D006276 7.4e-45 185.3 208 45.7
Ah.13g076730 Amaranthus hybridus HOM05D007529 ORTHO05D007451 1.3e-44 184.5 249 41.0
DCAR_013619 Daucus carota HOM05D007529 ORTHO05D007451 3.1e-43 179.9 275 38.9
FvH4_4g15570 Fragaria vesca HOM05D007529 ORTHO05D007451 1.5e-42 177.6 202 47.0
Cc06_g18420 Coffea canephora HOM05D007529 ORTHO05D007451 4.5e-42 176.0 258 39.5
SGA_v2.0_scaffold21G09330 Striga asiatica HOM05D007529 ORTHO05D007451 1.0e-41 174.9 265 38.1
Haze_19770 Corylus avellana HOM05D007529 ORTHO05D007451 2.7e-39 166.8 173 52.0
CiPaw.09G042800 Carya illinoinensis HOM05D007529 ORTHO05D007451 7.9e-39 165.2 261 41.0
HPP92_011341 Vanilla planifolia HOM05D007529 ORTHO05D007451 1.0e-38 164.9 269 38.7
Aqoxy7G01198 Aquilegia oxysepala HOM05D007529 ORTHO05D007451 4.3e-37 159.5 216 38.9
Nn1g04791 Nelumbo nucifera HOM05D007529 ORTHO05D007451 5.7e-37 159.1 256 36.3
Sabra04G0050900 Salix brachista HOM05D007529 ORTHO05D007451 1.7e-36 157.5 230 37.8
THA.LOC104825175 Tarenaya hassleriana HOM05D007529 ORTHO05D007451 1.7e-36 157.5 252 38.5
FvH4_2g38461 Fragaria vesca HOM05D007529 ORTHO05D007451 1.1e-35 154.8 190 48.4
Nitab4.5_0005195g0010 Nicotiana tabacum HOM05D007529 ORTHO05D007451 5.9e-34 149.1 268 36.2
THA.LOC104816403 Tarenaya hassleriana HOM05D007529 ORTHO05D007451 1.0e-33 148.3 269 35.7
Nitab4.5_0000826g0010 Nicotiana tabacum HOM05D007529 ORTHO05D007451 8.8e-30 135.2 159 42.8
Carub.0006s0294 Capsella rubella HOM05D005503 ORTHO05D007451 3.8e-25 119.8 269 31.2
AL6G13600 Arabidopsis lyrata HOM05D005503 ORTHO05D007451 1.4e-24 117.9 272 30.9
unitig_899.g15088 Utricularia gibba HOM05D007529 ORTHO05D007451 1.4e-24 117.9 170 38.2
CDE11G0566 Ceratophyllum demersum HOM05D007529 ORTHO05D007451 4.2e-24 116.3 171 35.1
AT5G04010 Arabidopsis thaliana HOM05D005503 ORTHO05D007451 5.5e-24 115.9 272 31.6
HPP92_011264 Vanilla planifolia HOM05D007529 ORTHO05D007451 5.5e-24 115.9 199 38.2
Potri.004G077301 Populus trichocarpa HOM05D007529 ORTHO05D007451 7.2e-24 115.5 162 40.1
CARHR209270 Cardamine hirsuta HOM05D005503 ORTHO05D007451 1.4e-22 111.3 257 30.0
arahy.Tifrunner.gnm1.ann1.5P9T4R Arachis hypogaea HOM05D007529 ORTHO05D007451 3.9e-22 109.8 118 47.5
Nn1g01084 Nelumbo nucifera HOM05D007529 ORTHO05D007451 3.9e-22 109.8 99 51.5
AUR62026141 Chenopodium quinoa HOM05D007529 ORTHO05D007451 2.0e-21 107.5 139 43.2
Aa31LG6G5380 Aethionema arabicum HOM05D005503 ORTHO05D007451 4.4e-21 106.3 250 29.6
THA.LOC104825174 Tarenaya hassleriana HOM05D007529 ORTHO05D007451 5.7e-21 105.9 122 41.0
Aa31LG6G5360 Aethionema arabicum HOM05D005503 ORTHO05D007451 1.8e-19 100.9 265 27.9
FAN12G3498 Fragaria x ananassa HOM05D007529 ORTHO05D007451 7.0e-19 99.0 169 39.1
FAN17G2871 Fragaria x ananassa HOM05D007529 ORTHO05D011815 7.0e-19 99.0 107 45.8
Psat6g093280 Pisum sativum HOM05D007529 ORTHO05D007451 2.0e-18 97.4 115 44.3
SEGI_22599 Sequoiadendron giganteum HOM05D007529 ORTHO05D007451 2.0e-18 97.4 258 30.2
Zm00001eb150670 Zea mays HOM05D007529 ORTHO05D007451 3.5e-18 96.7 275 28.7
Thhalv10015413m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 5.0e-17 92.8 267 28.5
Thhalv10027472m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 1.9e-16 90.9 250 28.8
Cpa.g.sc5.217 Carica papaya HOM05D007529 ORTHO05D007451 1.2e-15 88.2 79 53.2
BraA10t45255Z Brassica rapa HOM05D005503 ORTHO05D008949 1.6e-15 87.8 271 27.3
Os01g0800900 Oryza sativa ssp. japonica HOM05D007529 ORTHO05D007451 1.6e-15 87.8 272 30.9
Thhalv10015674m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 2.1e-15 87.4 267 28.8
Thhalv10027188m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 2.1e-15 87.4 253 30.0
Sp6g38750 Schrenkiella parvula HOM05D005503 ORTHO05D007451 4.7e-15 86.3 251 29.1
Thhalv10023018m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 8.0e-15 85.5 249 28.5
FvH4_4g15602 Fragaria vesca HOM05D007529 ORTHO05D007451 8.0e-15 85.5 170 37.1
C08p39580 Brassica napus HOM05D005503 ORTHO05D007451 4.0e-14 83.2 253 29.6
A10p32120 Brassica napus HOM05D005503 ORTHO05D008949 8.8e-14 82.0 268 27.2
BcaC07g40964 Brassica carinata HOM05D005503 ORTHO05D007451 2.0e-13 80.9 253 29.2
BcaC02g08721 Brassica carinata HOM05D005503 ORTHO05D007451 2.6e-13 80.5 267 27.7
C04p51340 Brassica napus HOM05D005503 ORTHO05D007451 3.3e-13 80.1 265 27.9
SMO340G0132 Selaginella moellendorffii HOM05D027965 ORTHO05D007451 4.4e-13 79.7 293 26.3
A09p56430 Brassica napus HOM05D005503 ORTHO05D007451 5.7e-13 79.3 251 27.9
BraA09t41037Z Brassica rapa HOM05D005503 ORTHO05D007451 5.7e-13 79.3 251 27.9
BolC4t26724H Brassica oleracea HOM05D005503 ORTHO05D007451 7.5e-13 79.0 280 27.9
ClCG04G003940 Citrullus lanatus HOM05D007529 ORTHO05D007451 9.7e-13 78.6 79 48.1
A09p56630 Brassica napus HOM05D005503 ORTHO05D007451 2.2e-12 77.4 251 27.9
BraA09t41054Z Brassica rapa HOM05D005503 ORTHO05D007451 2.2e-12 77.4 251 27.9
FAN22G2112 Fragaria x ananassa HOM05D007529 ORTHO05D007451 2.2e-12 77.4 85 50.6
C08p39400 Brassica napus HOM05D005503 ORTHO05D007451 2.8e-12 77.0 251 28.3
Cpa.g.sc5.218 Carica papaya HOM05D007529 ORTHO05D007451 4.8e-12 76.3 68 50.0
C09p72840 Brassica napus HOM05D005503 ORTHO05D008949 6.3e-12 75.9 268 26.1
BolC9t60020H Brassica oleracea HOM05D005503 ORTHO05D008949 6.3e-12 75.9 268 26.1
CsaV3_4G021970 Cucumis sativus L. HOM05D007529 ORTHO05D007451 5.3e-11 72.8 75 46.7
BcaC07g40948 Brassica carinata HOM05D005503 ORTHO05D007451 7.0e-11 72.4 255 28.2
BolC8t51514H Brassica oleracea HOM05D005503 ORTHO05D007451 7.0e-11 72.4 255 28.2
MELO3C014210.2 Cucumis melo HOM05D007529 ORTHO05D007451 7.0e-11 72.4 77 46.8
BcaC06g32102 Brassica carinata HOM05D005503 ORTHO05D008949 2.7e-10 70.5 270 24.4
FAN17G0844 Fragaria x ananassa HOM05D007529 ORTHO05D007451 2.2e-09 67.4 98 38.8
BolC8t51531H Brassica oleracea HOM05D005503 ORTHO05D007451 3.2e-08 63.5 166 30.7
PGR083G1582 Punica granatum HOM05D006599 ORTHO05D008304 8.0e-07 58.9 109 35.8
Ciclev10012597m.g Citrus clementina HOM05D006599 ORTHO05D008304 3.0e-06 57.0 110 33.6
PSO478G2235 Papaver somniferum HOM05D006599 ORTHO05D008304 3.0e-06 57.0 112 31.2
Duzib147G0316 Durio zibethinus HOM05D006599 ORTHO05D008304 6.8e-06 55.8 110 32.7


User provided reference genes

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