Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G008802 Manihot esculenta HOM05D000087 ORTHO05D048697 3.6e-29 131.0 69 100.0
Manes.09G008600 Manihot esculenta HOM05D000087 ORTHO05D006949 3.4e-27 124.4 66 98.5
Manes.08G056400 Manihot esculenta HOM05D000087 ORTHO05D006949 7.3e-22 106.7 68 85.3
QL07p006731 Quercus lobata HOM05D000087 ORTHO05D006949 1.7e-18 95.5 71 71.8
Cfa016731 Carpinus fangiana HOM05D000087 ORTHO05D006949 4.9e-18 94.0 66 72.7
Potri.006G043600 Populus trichocarpa HOM05D000087 ORTHO05D006949 1.1e-17 92.8 67 74.6
QL07p006521 Quercus lobata HOM05D000087 ORTHO05D006949 1.1e-17 92.8 71 70.4
Sabra06G0029700 Salix brachista HOM05D000087 ORTHO05D006949 1.1e-17 92.8 67 74.6
Atru.chr1.1281 Acer truncatum HOM05D000087 ORTHO05D006949 2.4e-17 91.7 69 72.5
Haze_19739 Corylus avellana HOM05D000087 ORTHO05D006949 9.3e-17 89.7 66 71.2
Gohir.D01G216700 Gossypium hirsutum HOM05D000087 ORTHO05D006949 1.2e-16 89.4 67 73.1
Gorai.002G263000 Gossypium raimondii HOM05D000087 ORTHO05D006949 1.2e-16 89.4 67 73.1
CiPaw.10G037800 Carya illinoinensis HOM05D000087 ORTHO05D006949 3.5e-16 87.8 66 68.2
Ciclev10004589m.g Citrus clementina HOM05D000087 ORTHO05D006949 2.3e-15 85.1 65 72.3
Thecc.05G142200 Theobroma cacao HOM05D000087 ORTHO05D006949 3.0e-15 84.7 69 68.1
TWI53G0931 Tripterygium wilfordii HOM05D000087 ORTHO05D006949 3.0e-15 84.7 65 67.7
Lalb_Chr06g0173571 Lupinus albus HOM05D000087 ORTHO05D006949 3.9e-15 84.3 66 65.2
VMungo0720G3000 Vigna mungo HOM05D000087 ORTHO05D006949 1.9e-14 82.0 71 66.2
Gohir.A01G226900 Gossypium hirsutum HOM05D000087 ORTHO05D006949 2.5e-14 81.6 67 67.2
Phvul.007G248100 Phaseolus vulgaris HOM05D000087 ORTHO05D006949 3.3e-14 81.3 53 77.4
Duzib128G0219 Durio zibethinus HOM05D000087 ORTHO05D006949 4.3e-14 80.9 51 80.4
Sed0025677 Sechium edule HOM05D000087 ORTHO05D006949 4.3e-14 80.9 65 64.6
arahy.Tifrunner.gnm1.ann1.WT5GGH Arachis hypogaea HOM05D000087 ORTHO05D006949 9.6e-14 79.7 69 68.1
Ca_27583_v3 Cicer arietinum L. HOM05D000087 ORTHO05D006949 1.3e-13 79.3 65 66.2
arahy.Tifrunner.gnm1.ann1.0SUS71 Arachis hypogaea HOM05D000087 ORTHO05D006949 1.6e-13 79.0 68 67.6
Prupe.7G047000 Prunus persica HOM05D000087 ORTHO05D006949 2.8e-13 78.2 65 66.2
Glyma.02G189600 Glycine max HOM05D000087 ORTHO05D006949 3.6e-13 77.8 68 63.2
PGR031G1997 Punica granatum HOM05D000087 ORTHO05D006949 3.6e-13 77.8 69 65.2
Cpa.g.sc5.193 Carica papaya HOM05D000087 ORTHO05D006949 6.2e-13 77.0 49 77.6
Lj5g0022396 Lotus japonicus HOM05D000087 ORTHO05D006949 6.2e-13 77.0 67 59.7
QL04p096453 Quercus lobata HOM05D000001 ORTHO05D048697 6.2e-13 77.0 60 66.7
Eucgr.A02270 Eucalyptus grandis HOM05D000087 ORTHO05D006949 1.1e-12 76.3 45 82.2
vmacro07827 Vaccinium macrocarpon HOM05D000087 ORTHO05D006949 1.8e-12 75.5 69 65.2
GSVIVG01033570001 Vitis vinifera HOM05D000087 ORTHO05D006949 1.8e-12 75.5 66 63.6
CANSAT80G0708 Cannabis sativa HOM05D000087 ORTHO05D006949 2.4e-12 75.1 76 56.6
Dinv04143 Davidia involucrata HOM05D000087 ORTHO05D006949 3.1e-12 74.7 72 59.7
THA.LOC104823213 Tarenaya hassleriana HOM05D000087 ORTHO05D006949 3.1e-12 74.7 78 61.5
Dinv18482 Davidia involucrata HOM05D000087 ORTHO05D006949 4.0e-12 74.3 73 60.3
CsaV3_3G040460 Cucumis sativus L. HOM05D000087 ORTHO05D006949 5.3e-12 73.9 63 61.9
ClCG10G016000 Citrullus lanatus HOM05D000087 ORTHO05D006949 6.9e-12 73.6 60 66.7
HanXRQChr04g0124911 Helianthus annuus HOM05D000087 ORTHO05D006949 1.2e-11 72.8 67 56.7
Medtr1g051055 Medicago truncatula HOM05D000087 ORTHO05D006949 1.5e-11 72.4 71 57.7
Nn7g36500 Nelumbo nucifera HOM05D000087 ORTHO05D006949 2.6e-11 71.6 67 58.2
TPR.G4388 Trifolium pratense HOM05D000087 ORTHO05D006949 5.8e-11 70.5 65 61.5
CARHR209210 Cardamine hirsuta HOM05D000087 ORTHO05D006949 7.6e-11 70.1 66 62.1
MD14G1083600 Malus domestica HOM05D000087 ORTHO05D006949 9.9e-11 69.7 66 63.6
TAR633G1793 Trochodendron aralioides HOM05D000087 ORTHO05D006949 9.9e-11 69.7 66 56.1
CSS0049338 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D006949 1.3e-10 69.3 69 59.4
CSS0049927 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D006949 1.3e-10 69.3 69 59.4
Sp6g38690 Schrenkiella parvula HOM05D000087 ORTHO05D006949 2.2e-10 68.6 71 59.2
Aa31LG3G2750 Aethionema arabicum HOM05D000087 ORTHO05D006949 4.9e-10 67.4 68 60.3
MELO3C009779.2 Cucumis melo HOM05D000087 ORTHO05D006949 6.4e-10 67.0 63 57.1
AT5G04060 Arabidopsis thaliana HOM05D000087 ORTHO05D006949 1.1e-09 66.2 68 58.8
Carub.0006s0302 Capsella rubella HOM05D000087 ORTHO05D006949 1.1e-09 66.2 72 56.9
AL6G13680 Arabidopsis lyrata HOM05D000087 ORTHO05D006949 1.4e-09 65.9 70 57.1
Nitab4.5_0008767g0010 Nicotiana tabacum HOM05D000087 ORTHO05D006949 2.4e-09 65.1 75 53.3
Actinidia39177 Actinidia chinensis HOM05D000087 ORTHO05D006949 4.2e-09 64.3 66 56.1
Glyma.10G101200 Glycine max HOM05D000087 ORTHO05D006949 4.2e-09 64.3 73 54.8
Lsat_1_v5_gn_8_82881 Lactuca sativa HOM05D000087 ORTHO05D006949 9.3e-09 63.2 66 56.1
BcaC06g32111 Brassica carinata HOM05D000087 ORTHO05D006949 1.6e-08 62.4 48 64.6
FAN02G0558 Fragaria x ananassa HOM05D000087 ORTHO05D006949 1.6e-08 62.4 65 60.0
FAN05G3951 Fragaria x ananassa HOM05D000087 ORTHO05D006949 1.6e-08 62.4 65 60.0
Atru.chr9.389 Acer truncatum HOM05D000087 ORTHO05D030782 2.7e-08 61.6 40 80.0
AL3G21540 Arabidopsis lyrata HOM05D000087 ORTHO05D006949 3.5e-08 61.2 66 56.1
BraA10t45250Z Brassica rapa HOM05D000087 ORTHO05D006949 3.5e-08 61.2 51 62.7
PSO339G4519 Papaver somniferum HOM05D000087 ORTHO05D006949 3.5e-08 61.2 64 54.7
PSO384G2286 Papaver somniferum HOM05D000087 ORTHO05D006949 3.5e-08 61.2 64 54.7
BcaC06g32110 Brassica carinata HOM05D000087 ORTHO05D006949 4.6e-08 60.8 49 61.2
C09p72770 Brassica napus HOM05D000087 ORTHO05D006949 4.6e-08 60.8 49 61.2
BolC9t60015H Brassica oleracea HOM05D000087 ORTHO05D006949 4.6e-08 60.8 49 61.2
Thhalv10020357m.g Eutrema salsugineum HOM05D000087 ORTHO05D006949 4.6e-08 60.8 67 56.7
A10p32050 Brassica napus HOM05D000087 ORTHO05D006949 7.9e-08 60.1 50 62.0
FvH4_6g25080 Fragaria vesca HOM05D000087 ORTHO05D006949 1.3e-07 59.3 65 56.9
CARHR084690 Cardamine hirsuta HOM05D000087 ORTHO05D006949 1.8e-07 58.9 65 52.3
FAN09G3523 Fragaria x ananassa HOM05D000087 ORTHO05D006949 1.8e-07 58.9 65 58.5
Nitab4.5_0005442g0020 Nicotiana tabacum HOM05D000087 ORTHO05D006949 2.3e-07 58.5 78 48.7
RcHm_v2.0_Chr2g0124841 Rosa chinensis HOM05D000087 ORTHO05D006949 3.0e-07 58.2 65 58.5
Rhsim03G0034300 Rhododendron simsii HOM05D000087 ORTHO05D006949 3.9e-07 57.8 55 60.0
CAN.G641.40 Capsicum annuum HOM05D000087 ORTHO05D006949 6.7e-07 57.0 81 46.9
Aqoxy2G00306 Aquilegia oxysepala HOM05D000087 ORTHO05D006949 8.7e-07 56.6 42 61.9
Solyc10g079450.2 Solanum lycopersicum HOM05D000087 ORTHO05D006949 8.7e-07 56.6 79 48.1
Sopen10g030090 Solanum pennellii HOM05D000087 ORTHO05D006949 8.7e-07 56.6 79 48.1
AT3G10200 Arabidopsis thaliana HOM05D000087 ORTHO05D006949 1.1e-06 56.2 65 53.8
CiPaw.09G044000 Carya illinoinensis HOM05D000087 ORTHO05D006949 1.9e-06 55.5 46 67.4
Peaxi162Scf00130g01318 Petunia axillaris HOM05D000087 ORTHO05D006949 2.5e-06 55.1 75 46.7
DCAR_020541 Daucus carota HOM05D000087 ORTHO05D006949 4.3e-06 54.3 67 46.3
BraA05t22682Z Brassica rapa HOM05D000087 ORTHO05D006949 5.6e-06 53.9 65 52.3
Carub.0003s0937 Capsella rubella HOM05D000087 ORTHO05D006949 5.6e-06 53.9 53 60.4
Sp3g08480 Schrenkiella parvula HOM05D000087 ORTHO05D006949 5.6e-06 53.9 49 61.2
unitig_0.g2218 Utricularia gibba HOM05D000087 ORTHO05D006949 5.6e-06 53.9 69 43.5
BolC5t34449H Brassica oleracea HOM05D000087 ORTHO05D006949 7.4e-06 53.5 65 50.8


User provided reference genes

Program Settings