Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G007500 Manihot esculenta HOM05D008360 ORTHO05D010532 3.4e-21 104.0 49 100.0
Duzib093G1186 Durio zibethinus HOM05D008360 ORTHO05D010532 9.2e-19 95.9 49 85.7
Manes.08G057500 Manihot esculenta HOM05D008360 ORTHO05D010532 4.6e-18 93.6 49 87.8
Duzib106G1984 Durio zibethinus HOM05D008360 ORTHO05D010532 5.9e-18 93.2 49 83.7
CiPaw.09G045700 Carya illinoinensis HOM05D008360 ORTHO05D010532 7.8e-18 92.8 49 85.7
Prupe.7G043000 Prunus persica HOM05D008360 ORTHO05D010532 3.0e-17 90.9 49 81.6
Hma1.2p1_1048F.1_g251690 Hydrangea macrophylla HOM05D008360 ORTHO05D010532 3.9e-17 90.5 49 81.6
Thecc.05G140600 Theobroma cacao HOM05D008360 ORTHO05D010532 3.9e-17 90.5 49 81.6
ECA248G1201 Erigeron canadensis HOM05D001008 ORTHO05D009098 6.6e-17 89.7 48 79.2
RcHm_v2.0_Chr3g0476891 Rosa chinensis HOM05D008360 ORTHO05D010532 1.1e-16 89.0 49 81.6
CAN.G1237.40 Capsicum annuum HOM05D008360 ORTHO05D010532 2.5e-16 87.8 49 79.6
Nitab4.5_0002162g0190 Nicotiana tabacum HOM05D008360 ORTHO05D010532 9.5e-16 85.9 47 76.6
Potri.016G038300 Populus trichocarpa HOM05D008360 ORTHO05D010532 9.5e-16 85.9 49 77.6
Dinv34381 Davidia involucrata HOM05D008360 ORTHO05D010532 1.2e-15 85.5 47 78.7
Cc06_g18840 Coffea canephora HOM05D008360 ORTHO05D010532 8.0e-15 82.8 49 71.4
COL.COLO4_37957 Corchorus olitorius HOM05D008360 ORTHO05D010532 8.0e-15 82.8 49 77.6
Hund24629 Selenicereus undatus HOM05D008360 ORTHO05D010532 8.0e-15 82.8 47 74.5
CSS0042665 Camellia sinensis var. sinensis HOM05D008360 ORTHO05D010532 1.4e-14 82.0 46 76.1
AUR62031993 Chenopodium quinoa HOM05D000009 ORTHO05D000008 1.4e-14 82.0 46 76.1
FAN09G2365 Fragaria x ananassa HOM05D008360 ORTHO05D010532 1.4e-14 82.0 47 70.2
FAN14G5043 Fragaria x ananassa HOM05D008360 ORTHO05D010532 1.4e-14 82.0 47 70.2
RcHm_v2.0_Chr3g0476991 Rosa chinensis HOM05D008360 ORTHO05D010532 1.8e-14 81.6 45 80.0
Solyc04g040000.2 Solanum lycopersicum HOM05D008360 ORTHO05D010532 1.8e-14 81.6 46 73.9
Gohir.A09G118500 Gossypium hirsutum HOM05D008360 ORTHO05D010532 6.8e-14 79.7 49 75.5
Gohir.D09G115400 Gossypium hirsutum HOM05D008360 ORTHO05D010532 6.8e-14 79.7 49 75.5
Gorai.006G133100 Gossypium raimondii HOM05D008360 ORTHO05D010532 6.8e-14 79.7 49 75.5
unitig_8.g3490 Utricularia gibba HOM05D008360 ORTHO05D010532 1.5e-13 78.6 47 66.0
Potri.006G041600 Populus trichocarpa HOM05D008360 ORTHO05D010532 2.6e-13 77.8 49 69.4
Carub.0005s2387 Capsella rubella HOM05D008360 ORTHO05D010532 3.4e-13 77.4 49 65.3
arahy.Tifrunner.gnm1.ann1.LHUB84 Arachis hypogaea HOM05D008360 ORTHO05D010532 4.4e-13 77.0 47 72.3
Phvul.001G125600 Phaseolus vulgaris HOM05D008360 ORTHO05D010532 4.4e-13 77.0 49 71.4
CARHR167260 Cardamine hirsuta HOM05D008360 ORTHO05D010532 5.8e-13 76.6 49 63.3
A09p49990 Brassica napus HOM05D008360 ORTHO05D010532 7.5e-13 76.3 49 65.3
C08p32400 Brassica napus HOM05D008360 ORTHO05D010532 7.5e-13 76.3 49 65.3
BolC8t50854H Brassica oleracea HOM05D008360 ORTHO05D010532 7.5e-13 76.3 49 65.3
BraA09t40449Z Brassica rapa HOM05D008360 ORTHO05D010532 7.5e-13 76.3 49 65.3
AL5G38550 Arabidopsis lyrata HOM05D008360 ORTHO05D010532 9.8e-13 75.9 49 63.3
AT3G57062 Arabidopsis thaliana HOM05D008360 ORTHO05D010532 9.8e-13 75.9 49 63.3
THA.LOC104824413 Tarenaya hassleriana HOM05D008360 ORTHO05D010532 1.7e-12 75.1 49 63.3
Migut.K00128 Erythranthe guttata HOM05D008360 ORTHO05D010532 2.2e-12 74.7 49 65.3
Thhalv10006358m.g Eutrema salsugineum HOM05D008360 ORTHO05D010532 2.2e-12 74.7 49 63.3
Aa31LG10G11990 Aethionema arabicum HOM05D008360 ORTHO05D010532 2.9e-12 74.3 49 63.3
Migut.J01675 Erythranthe guttata HOM05D008360 ORTHO05D010532 1.4e-11 72.0 47 63.8
Medtr7g090260 Medicago truncatula HOM05D008360 ORTHO05D010532 3.2e-11 70.9 48 64.6
Lj1g0003695 Lotus japonicus HOM05D008360 ORTHO05D010532 4.1e-11 70.5 47 61.7
Sabra06G0028300 Salix brachista HOM05D008360 ORTHO05D010532 2.0e-10 68.2 44 63.6
BcaC02g12894 Brassica carinata HOM05D008360 ORTHO05D010532 4.6e-10 67.0 49 61.2
Lalb_Chr25g0286871 Lupinus albus HOM05D008360 ORTHO05D010532 1.0e-09 65.9 46 65.2
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 1.0e-09 65.9 37 73.0
Actinidia17687 Actinidia chinensis HOM05D008360 ORTHO05D010532 1.3e-09 65.5 39 69.2
Lalb_Chr20g0110161 Lupinus albus HOM05D008360 ORTHO05D010532 1.3e-09 65.5 50 66.0
PSO384G3670 Papaver somniferum HOM05D008360 ORTHO05D010532 1.7e-09 65.1 49 57.1
Hma1.2p1_1048F.1_g251680 Hydrangea macrophylla HOM05D008360 ORTHO05D010532 3.0e-09 64.3 49 59.2
AL4G39310 Arabidopsis lyrata HOM05D008360 ORTHO05D010532 6.6e-09 63.2 49 55.1
Os07g0213500 Oryza sativa ssp. japonica HOM05D008360 ORTHO05D010532 4.3e-08 60.5 49 53.1
Carub.0004s2362 Capsella rubella HOM05D008360 ORTHO05D010532 5.6e-08 60.1 49 55.1
Os03g0810500 Oryza sativa ssp. japonica HOM05D008360 ORTHO05D010532 7.3e-08 59.7 49 57.1
RcHm_v2.0_Chr3g0477841 Rosa chinensis HOM05D008360 ORTHO05D010532 1.6e-07 58.5 30 86.7
Lsat_1_v5_gn_3_122560 Lactuca sativa HOM05D008360 ORTHO05D010532 8.9e-06 52.8 29 79.3


User provided reference genes

Program Settings