Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 4.0e-162 574.7 291 100.0
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 9.6e-132 473.8 290 81.4
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 2.4e-130 469.2 290 79.3
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 1.7e-128 463.0 290 80.7
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 2.2e-128 462.6 291 79.4
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 8.4e-128 460.7 290 79.7
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 4.2e-127 458.4 291 80.4
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 4.2e-127 458.4 290 79.0
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 1.0e-125 453.8 290 77.2
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 1.8e-125 453.0 291 78.4
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 1.8e-125 453.0 291 78.4
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 2.3e-125 452.6 290 79.0
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 2.3e-125 452.6 290 77.6
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 5.1e-125 451.4 290 78.6
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 8.7e-125 450.7 290 76.9
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 2.5e-124 449.1 290 78.3
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 5.6e-124 448.0 290 79.0
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 1.3e-123 446.8 293 76.8
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 2.8e-123 445.7 291 77.0
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.1e-122 443.7 292 76.4
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.1e-122 443.7 292 76.4
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 1.8e-122 443.0 291 77.3
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 5.3e-122 441.4 291 76.3
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 5.3e-122 441.4 290 76.2
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 6.9e-122 441.0 290 77.2
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 6.9e-122 441.0 288 78.5
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 9.0e-122 440.7 290 77.2
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 1.2e-121 440.3 292 76.4
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 1.5e-121 439.9 290 75.5
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 4.5e-121 438.3 320 70.3
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 4.5e-121 438.3 290 75.9
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 1.3e-120 436.8 294 75.9
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 2.2e-120 436.0 290 77.9
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 3.8e-120 435.3 292 75.7
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 3.8e-120 435.3 293 75.8
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 6.5e-120 434.5 290 76.2
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 8.4e-120 434.1 290 74.5
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 1.4e-119 433.3 289 74.4
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 1.4e-119 433.3 291 76.6
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 4.2e-119 431.8 325 71.7
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 4.6e-118 428.3 290 75.2
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 6.0e-118 427.9 290 73.4
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 1.3e-117 426.8 291 74.9
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 1.3e-117 426.8 290 75.2
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 1.8e-117 426.4 292 74.3
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 1.5e-116 423.3 291 73.9
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 1.5e-116 423.3 291 74.6
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 1.9e-116 422.9 291 72.2
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 2.5e-116 422.5 316 69.9
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 3.3e-116 422.2 291 74.6
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 4.3e-116 421.8 291 74.2
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 7.4e-116 421.0 324 68.5
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 7.4e-116 421.0 290 75.2
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 2.2e-115 419.5 289 73.4
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 2.8e-115 419.1 290 72.8
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 6.3e-115 417.9 294 73.1
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 8.2e-115 417.5 291 73.5
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 8.2e-115 417.5 294 73.1
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 1.8e-114 416.4 291 74.2
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 9.0e-114 414.1 294 73.1
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 1.2e-113 413.7 291 73.9
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 2.0e-113 412.9 292 70.2
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 2.0e-113 412.9 290 73.4
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 3.4e-113 412.1 293 72.4
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 7.7e-113 411.0 291 71.5
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 3.8e-112 408.7 295 69.8
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 5.0e-112 408.3 292 69.2
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 1.1e-111 407.1 292 69.2
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 3.2e-111 405.6 303 71.0
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 3.2e-111 405.6 303 71.0
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 4.2e-111 405.2 290 71.0
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 5.5e-111 404.8 303 71.0
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 2.1e-110 402.9 291 69.8
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 2.1e-110 402.9 314 66.9
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 3.6e-110 402.1 292 71.9
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 4.6e-110 401.7 321 67.3
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 7.9e-110 401.0 291 71.5
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 1.0e-109 400.6 291 73.2
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 2.3e-109 399.4 290 70.3
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 2.3e-109 399.4 291 70.8
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 1.1e-108 397.1 290 70.7
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 1.1e-108 397.1 292 71.9
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 5.7e-108 394.8 290 69.3
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 9.7e-108 394.0 292 69.5
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 1.4e-106 390.2 302 69.2
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 4.1e-106 388.7 293 68.3
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 6.9e-106 387.9 292 70.2
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 6.9e-106 387.9 289 70.2
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 9.1e-106 387.5 292 69.9
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 2.0e-105 386.3 291 68.0
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 2.6e-105 386.0 292 69.2
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 3.4e-105 385.6 272 72.4
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 1.7e-104 383.3 352 59.1
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 3.2e-103 379.0 291 69.4
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 1.6e-102 376.7 293 68.9
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 2.1e-102 376.3 281 70.1
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 4.7e-102 375.2 292 68.2
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 6.1e-102 374.8 275 72.4
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 3.0e-101 372.5 284 70.1
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 8.8e-101 370.9 236 78.4
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 3.3e-100 369.0 291 67.7
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 9.7e-100 367.5 307 64.5
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 1.3e-99 367.1 334 61.7
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 4.8e-99 365.2 285 69.1
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 1.5e-97 360.1 283 66.1
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 2.6e-97 359.4 293 62.8
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 1.3e-96 357.1 295 63.7
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 1.4e-95 353.6 237 71.7
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 1.9e-95 353.2 236 75.8
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 4.7e-94 348.6 291 61.9
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 3.9e-93 345.5 238 71.8
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 4.4e-92 342.0 291 61.5
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 8.2e-91 337.8 292 62.7
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 2.0e-89 333.2 291 61.2
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 2.2e-88 329.7 298 59.4
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 7.2e-87 324.7 305 60.3
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 6.1e-86 321.6 209 77.0
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 1.4e-85 320.5 276 64.9
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 5.2e-85 318.5 291 60.5
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 1.5e-84 317.0 291 59.1
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 6.3e-83 311.6 291 58.1
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 1.4e-82 310.5 304 55.6
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 5.3e-82 308.5 205 76.1
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 3.2e-79 299.3 291 57.0
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 1.6e-78 297.0 308 54.9
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 4.7e-78 295.4 293 54.3
TPR.G16082 Trifolium pratense HOM05D002003 ORTHO05D002037 6.1e-78 295.0 202 72.8
Actinidia22259 Actinidia chinensis HOM05D004518 ORTHO05D005434 5.2e-77 292.0 214 72.0
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 7.5e-76 288.1 249 59.8
Aqoxy2G02076 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 2.4e-74 283.1 202 68.8
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 7.7e-73 278.1 276 55.1
DCAR_020579 Daucus carota HOM05D004518 ORTHO05D005434 1.3e-72 277.3 292 54.5
ATR0307G082 Amborella trichopoda HOM05D004518 ORTHO05D005434 2.5e-71 273.1 204 66.7
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 7.2e-71 271.6 248 56.5
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 4.0e-69 265.8 367 44.7
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 4.9e-67 258.8 291 52.9
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 1.2e-65 254.2 218 58.3
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 1.9e-63 246.9 324 46.6
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 3.3e-63 246.1 289 49.5
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 6.0e-57 225.3 206 57.8
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 1.5e-55 220.7 319 39.5
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 7.3e-55 218.4 173 68.2
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 1.1e-50 204.5 333 39.6
Cpa.g.sc92.78 Carica papaya HOM05D004518 ORTHO05D005434 4.3e-47 192.6 168 60.7
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 7.8e-41 171.8 329 34.7
TPR.G27640 Trifolium pratense HOM05D004518 ORTHO05D005434 4.2e-34 149.4 101 76.2
MSTRG.5996 Avicennia marina HOM05D004518 ORTHO05D005434 1.9e-31 140.6 90 77.8
Cre08.g386050 Chlamydomonas reinhardtii HOM05D004518 ORTHO05D005434 3.8e-27 126.3 267 34.8
SEGI_26369 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 1.9e-26 124.0 76 72.4
BolC4t21949H Brassica oleracea HOM05D004518 ORTHO05D005434 3.6e-22 109.8 131 51.1
TAR369G0459 Trochodendron aralioides HOM05D004518 ORTHO05D005434 4.0e-21 106.3 97 60.8
C04p03070 Brassica napus HOM05D004518 ORTHO05D005434 9.9e-20 101.7 129 46.5
Psat3g079760 Pisum sativum HOM05D004518 ORTHO05D005434 9.9e-20 101.7 75 66.7
Dinv05308 Davidia involucrata HOM05D004518 ORTHO05D005434 2.4e-18 97.1 60 78.3
MCO13G544 Micromonas commoda HOM05D004518 ORTHO05D005434 1.0e-16 91.7 331 27.2
FAN02G0789 Fragaria x ananassa HOM05D004518 ORTHO05D011253 5.6e-15 85.9 66 69.7
MBI19_g45264_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 1.6e-14 84.3 142 40.1
PGSC0003DMG400012448 Solanum tuberosum HOM05D004518 ORTHO05D005434 2.5e-07 60.5 46 58.7
PGSC0003DMG400010553 Solanum tuberosum HOM05D004518 ORTHO05D005434 1.3e-06 58.2 42 59.5
SEGI_18914 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 3.7e-06 56.6 105 38.1


User provided reference genes

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