Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G001100 Manihot esculenta HOM05D004369 ORTHO05D004907 2.6e-116 422.2 231 100.0
Manes.08G065900 Manihot esculenta HOM05D004369 ORTHO05D004907 1.3e-86 323.6 237 78.5
Potri.006G032300 Populus trichocarpa HOM05D004369 ORTHO05D004907 2.5e-58 229.6 261 57.5
Sabra06G0021600 Salix brachista HOM05D004369 ORTHO05D004907 5.6e-58 228.4 256 56.6
Potri.016G029600 Populus trichocarpa HOM05D004369 ORTHO05D004907 1.1e-56 224.2 256 57.0
Sabra16G0033500 Salix brachista HOM05D004369 ORTHO05D004907 1.1e-56 224.2 253 55.7
Duzib106G1975 Durio zibethinus HOM05D004369 ORTHO05D004907 2.9e-54 216.1 242 58.3
Haze_20292 Corylus avellana HOM05D004369 ORTHO05D004907 7.1e-53 211.5 239 55.6
Thecc.05G119700 Theobroma cacao HOM05D004369 ORTHO05D004907 1.2e-52 210.7 257 54.1
Atru.chr1.1512 Acer truncatum HOM05D004369 ORTHO05D004907 1.0e-51 207.6 241 56.0
Cfa019946 Carpinus fangiana HOM05D004369 ORTHO05D004907 1.7e-51 206.8 239 54.8
TWI53G1196 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 5.1e-51 205.3 245 54.7
Dinv06038 Davidia involucrata HOM05D004369 ORTHO05D004907 1.5e-50 203.8 230 56.1
Ciclev10012618m.g Citrus clementina HOM05D004369 ORTHO05D004907 1.2e-49 200.7 246 53.3
TWI74G0038 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 1.2e-49 200.7 243 52.7
CiPaw.09G052400 Carya illinoinensis HOM05D004369 ORTHO05D004907 4.7e-49 198.7 235 55.3
Duzib128G0931 Durio zibethinus HOM05D004369 ORTHO05D004907 1.8e-48 196.8 241 57.3
Nn7g37071 Nelumbo nucifera HOM05D004369 ORTHO05D004907 5.8e-47 191.8 233 55.4
MD04G1191900 Malus domestica HOM05D004369 ORTHO05D004907 9.9e-47 191.0 263 51.3
Prupe.6G310500 Prunus persica HOM05D004369 ORTHO05D004907 3.8e-46 189.1 259 49.4
Cc00_g08990 Coffea canephora HOM05D004369 ORTHO05D004907 3.2e-45 186.0 251 52.2
Cpa.g.sc33.191 Carica papaya HOM05D004369 ORTHO05D004907 2.1e-44 183.3 238 52.1
TAR623G1559 Trochodendron aralioides HOM05D004369 ORTHO05D004907 1.0e-43 181.0 236 53.4
CSS0041918 Camellia sinensis var. sinensis HOM05D004369 ORTHO05D004907 1.3e-43 180.6 236 55.5
DCAR_013523 Daucus carota HOM05D004369 ORTHO05D004907 3.9e-43 179.1 219 49.3
MBI13_g13129_MAGBIO Magnolia biondii HOM05D004369 ORTHO05D004907 3.9e-43 179.1 234 52.1
RhsimUnG0020900 Rhododendron simsii HOM05D004369 ORTHO05D004907 6.6e-43 178.3 244 50.8
ClCG10G016480 Citrullus lanatus HOM05D004369 ORTHO05D004907 1.5e-42 177.2 245 50.6
Glyma.03G120700 Glycine max HOM05D004369 ORTHO05D004907 3.3e-42 176.0 245 47.8
RcHm_v2.0_Chr3g0457501 Rosa chinensis HOM05D004369 ORTHO05D004907 4.3e-42 175.6 189 57.1
PGR142G3989 Punica granatum HOM05D004369 ORTHO05D004907 4.7e-41 172.2 257 49.0
FvH4_6g07790 Fragaria vesca HOM05D004369 ORTHO05D004907 8.1e-41 171.4 259 54.4
Phvul.001G116900 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 8.1e-41 171.4 253 47.8
VMungo1383G1978 Vigna mungo HOM05D004369 ORTHO05D004907 8.1e-41 171.4 250 48.0
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 1.1e-40 171.0 260 54.2
Glyma.19G125300 Glycine max HOM05D004369 ORTHO05D004907 2.4e-40 169.9 245 46.1
QL07p014155 Quercus lobata HOM05D004369 ORTHO05D004907 4.0e-40 169.1 254 48.0
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 9.0e-40 167.9 259 53.7
Phvul.002G069001 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 1.2e-39 167.5 239 48.1
FAN09G2868 Fragaria x ananassa HOM05D004369 ORTHO05D004907 1.5e-39 167.2 258 53.9
Lalb_Chr14g0365411 Lupinus albus HOM05D004369 ORTHO05D004907 3.2e-37 159.5 247 44.9
Psat0ss9348g0120 Pisum sativum HOM05D004369 ORTHO05D004907 4.2e-37 159.1 259 45.6
CiPaw.10G044100 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.2e-36 157.5 187 54.5
Gohir.A01G192900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.1e-36 156.8 237 48.9
Gorai.002G226300 Gossypium raimondii HOM05D004369 ORTHO05D004907 2.7e-36 156.4 237 49.8
Lj1g0025044 Lotus japonicus HOM05D004369 ORTHO05D004907 4.6e-36 155.6 244 45.5
Gohir.D01G183200 Gossypium hirsutum HOM05D004369 ORTHO05D004907 6.0e-36 155.2 237 49.8
Eucgr.K01686 Eucalyptus grandis HOM05D004369 ORTHO05D004907 1.7e-35 153.7 280 41.8
Lsat_1_v5_gn_8_109221 Lactuca sativa HOM05D004369 ORTHO05D004907 2.3e-35 153.3 247 46.6
Medtr7g088620 Medicago truncatula HOM05D004369 ORTHO05D004907 2.3e-35 153.3 244 48.8
Actinidia37863 Actinidia chinensis HOM05D004369 ORTHO05D004907 6.6e-35 151.8 230 47.4
Oeu060762.1 Olea europaea HOM05D004369 ORTHO05D004907 6.6e-35 151.8 239 43.1
AUR62018430 Chenopodium quinoa HOM05D004369 ORTHO05D004907 8.7e-35 151.4 243 44.9
Sc19g0007900 Simmondsia chinensis HOM05D004369 ORTHO05D004907 8.7e-35 151.4 237 48.5
Migut.J01607 Erythranthe guttata HOM05D004369 ORTHO05D004907 2.5e-34 149.8 238 43.7
Ah.04g150390 Amaranthus hybridus HOM05D004369 ORTHO05D004907 3.3e-34 149.4 235 43.4
CsaV3_3G039860 Cucumis sativus L. HOM05D004369 ORTHO05D004907 5.6e-34 148.7 251 49.8
MELO3C009728.2 Cucumis melo HOM05D004369 ORTHO05D004907 7.3e-34 148.3 248 47.6
MSTRG.6296 Avicennia marina HOM05D004369 ORTHO05D004907 9.6e-34 147.9 233 45.1
CiPaw.12G092400 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.6e-33 147.1 180 55.6
Lalb_Chr22g0357981 Lupinus albus HOM05D004369 ORTHO05D004907 2.1e-33 146.7 244 43.0
EL10Ac3g07333 Beta vulgaris HOM05D004369 ORTHO05D004907 2.8e-33 146.4 251 44.6
AUR62021003 Chenopodium quinoa HOM05D004369 ORTHO05D004907 4.8e-33 145.6 240 44.2
Oeu009515.1 Olea europaea HOM05D004369 ORTHO05D004907 4.8e-33 145.6 241 44.0
MSTRG.19768 Avicennia marina HOM05D004369 ORTHO05D004907 1.1e-32 144.4 240 44.2
Ah.13g077330 Amaranthus hybridus HOM05D004369 ORTHO05D004907 2.4e-32 143.3 238 47.5
Gorai.007G351100 Gossypium raimondii HOM05D004369 ORTHO05D004907 1.5e-31 140.6 236 41.9
Aqoxy2G00033 Aquilegia oxysepala HOM05D004369 ORTHO05D004907 2.0e-31 140.2 261 45.2
Ca_08356_v3 Cicer arietinum L. HOM05D004369 ORTHO05D004907 2.6e-31 139.8 256 43.4
Gohir.D11G320900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.6e-31 139.8 236 41.9
Nitab4.5_0001270g0170 Nicotiana tabacum HOM05D004369 ORTHO05D004907 4.5e-31 139.0 240 44.2
Nitab4.5_0000123g0220 Nicotiana tabacum HOM05D004369 ORTHO05D004907 5.8e-31 138.7 241 44.0
Gohir.A11G305500 Gossypium hirsutum HOM05D004369 ORTHO05D004907 7.6e-31 138.3 236 42.4
PGR042G0777 Punica granatum HOM05D004369 ORTHO05D004907 1.3e-30 137.5 240 45.0
Migut.K00167 Erythranthe guttata HOM05D004369 ORTHO05D004907 3.8e-30 136.0 223 47.1
Oeu023004.1 Olea europaea HOM05D004369 ORTHO05D004907 3.8e-30 136.0 238 43.3
SalBow6G6868 Salvia bowleyana HOM05D004369 ORTHO05D004907 4.9e-30 135.6 220 44.1
MSTRG.26187 Avicennia marina HOM05D004369 ORTHO05D004907 8.4e-30 134.8 242 43.8
Oeu044231.1 Olea europaea HOM05D004369 ORTHO05D004907 4.2e-29 132.5 240 43.3
Nitab4.5_0000062g0280 Nicotiana tabacum HOM05D004369 ORTHO05D004907 9.3e-29 131.3 237 40.9
TPR.G22743 Trifolium pratense HOM05D004369 ORTHO05D004907 1.2e-28 131.0 172 58.1
PGSC0003DMG400028198 Solanum tuberosum HOM05D004369 ORTHO05D004907 2.1e-28 130.2 236 41.5
Peaxi162Scf00607g00054 Petunia axillaris HOM05D004369 ORTHO05D004907 2.7e-28 129.8 243 42.0
PGSC0003DMG400007200 Solanum tuberosum HOM05D004369 ORTHO05D004907 3.5e-28 129.4 237 40.5
Oeu057811.1 Olea europaea HOM05D004369 ORTHO05D004907 6.0e-28 128.6 238 41.6
CANSAT80G1482 Cannabis sativa HOM05D004369 ORTHO05D004907 1.8e-27 127.1 240 41.2
SGA_v2.0_scaffold66G22309 Striga asiatica HOM05D004369 ORTHO05D004907 1.8e-27 127.1 240 41.2
Solyc10g077130.1 Solanum lycopersicum HOM05D004369 ORTHO05D004907 4.3e-26 122.5 235 40.0
HPP92_012446 Vanilla planifolia HOM05D004369 ORTHO05D004907 9.6e-26 121.3 225 40.0
BcaC07g40111 Brassica carinata HOM05D004369 ORTHO05D004907 1.6e-25 120.6 247 39.7
THA.LOC104824387 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 2.1e-25 120.2 256 40.6
Sopen10g028810 Solanum pennellii HOM05D004369 ORTHO05D004907 2.8e-25 119.8 234 39.3
Oeu034749.1 Olea europaea HOM05D004369 ORTHO05D004907 3.7e-25 119.4 241 40.7
BcaB02g08344 Brassica carinata HOM05D004369 ORTHO05D004907 1.1e-24 117.9 241 39.8
Sopen10g031550 Solanum pennellii HOM05D004369 ORTHO05D004907 1.4e-24 117.5 237 38.8
Oeu034750.1 Olea europaea HOM05D004369 ORTHO05D004907 3.1e-24 116.3 241 39.4
CDE09G1065 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 9.0e-24 114.8 230 39.6
Sed0018866 Sechium edule HOM05D004369 ORTHO05D004907 9.0e-24 114.8 231 39.8
BolC8t50831H Brassica oleracea HOM05D004369 ORTHO05D004907 1.2e-23 114.4 248 38.7
BcaC07g40000 Brassica carinata HOM05D004369 ORTHO05D004907 2.0e-23 113.6 248 38.7
C08p32120 Brassica napus HOM05D004369 ORTHO05D004907 2.0e-23 113.6 248 38.7
THA.LOC104803243 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 2.0e-23 113.6 246 39.0
Thhalv10006505m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 5.8e-23 112.1 250 38.4
Thhalv10017173m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 7.6e-23 111.7 255 38.4
A09p49750 Brassica napus HOM05D004369 ORTHO05D004907 1.7e-22 110.5 248 41.1
BraA09t40428Z Brassica rapa HOM05D004369 ORTHO05D004907 1.7e-22 110.5 248 41.1
Sp5g05710 Schrenkiella parvula HOM05D004369 ORTHO05D004907 1.1e-21 107.8 257 38.5
Sp4g23330 Schrenkiella parvula HOM05D004369 ORTHO05D004907 1.4e-21 107.5 248 39.1
C04p68730 Brassica napus HOM05D004369 ORTHO05D004907 1.9e-21 107.1 245 36.7
BolC4t28378H Brassica oleracea HOM05D004369 ORTHO05D004907 1.9e-21 107.1 245 36.7
BcaC02g12874 Brassica carinata HOM05D004369 ORTHO05D004907 2.5e-21 106.7 245 37.6
A04p31330 Brassica napus HOM05D004369 ORTHO05D004907 2.5e-21 106.7 245 37.6
A04p03590 Brassica napus HOM05D004369 ORTHO05D004907 3.2e-21 106.3 242 39.3
BraA04t16076Z Brassica rapa HOM05D004369 ORTHO05D004907 4.2e-21 105.9 242 39.3
Carub.0005s2361 Capsella rubella HOM05D004369 ORTHO05D004907 4.2e-21 105.9 258 36.4
SalBow1G6186 Salvia bowleyana HOM05D004369 ORTHO05D004907 4.2e-21 105.9 243 38.3
HanXRQChr09g0258571 Helianthus annuus HOM05D004369 ORTHO05D004907 5.5e-21 105.5 235 43.8
AL5G38270 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 7.1e-21 105.1 257 37.7
BraA04t18590Z Brassica rapa HOM05D004369 ORTHO05D004907 2.1e-20 103.6 247 36.8
CARHR136130 Cardamine hirsuta HOM05D004369 ORTHO05D004907 2.1e-20 103.6 248 39.1
BcaC02g09876 Brassica carinata HOM05D004369 ORTHO05D004907 2.7e-20 103.2 245 38.8
C04p35650 Brassica napus HOM05D004369 ORTHO05D004907 2.7e-20 103.2 245 38.8
BolC4t25239H Brassica oleracea HOM05D004369 ORTHO05D004907 2.7e-20 103.2 245 38.8
HanXRQChr03g0086901 Helianthus annuus HOM05D004369 ORTHO05D004907 2.7e-20 103.2 241 41.1
CAN.G959.22 Capsicum annuum HOM05D004369 ORTHO05D004907 6.0e-20 102.1 182 44.0
THA.LOC104815333 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 6.0e-20 102.1 240 37.1
Aa31LG10G11730 Aethionema arabicum HOM05D004369 ORTHO05D004907 7.9e-20 101.7 229 41.0
Peaxi162Scf00003g05315 Petunia axillaris HOM05D004369 ORTHO05D004907 7.9e-20 101.7 244 37.3
CARHR167030 Cardamine hirsuta HOM05D004369 ORTHO05D004907 1.3e-19 100.9 269 38.7
AT3G56880 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 1.8e-19 100.5 252 37.3
Gohir.A11G305600 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.3e-19 100.1 237 35.4
Gohir.D11G321000 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.3e-19 100.1 236 35.2
Lalb_Chr24g0400611 Lupinus albus HOM05D004369 ORTHO05D004907 2.3e-19 100.1 190 44.2
PSO339G3328 Papaver somniferum HOM05D004369 ORTHO05D004907 2.3e-19 100.1 179 44.1
Sc25g0005580 Simmondsia chinensis HOM05D004369 ORTHO05D004907 3.0e-19 99.8 128 51.6
Gorai.007G351200 Gossypium raimondii HOM05D004369 ORTHO05D004907 3.9e-19 99.4 236 35.2
PSO384G0208 Papaver somniferum HOM05D004369 ORTHO05D004907 5.1e-19 99.0 179 43.6
DCAR_020610 Daucus carota HOM05D004369 ORTHO05D004907 8.7e-19 98.2 191 39.8
AT2G41010 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 1.5e-18 97.4 192 41.7
ECA236G2438 Erigeron canadensis HOM05D004369 ORTHO05D004907 4.3e-18 95.9 237 38.8
SGA_v2.0_scaffold69G23192 Striga asiatica HOM05D004369 ORTHO05D004907 4.3e-18 95.9 240 34.2
ATR1096G063 Amborella trichopoda HOM05D004369 ORTHO05D004907 1.6e-17 94.0 235 35.7
Eucgr.A02182 Eucalyptus grandis HOM05D004369 ORTHO05D004907 1.6e-17 94.0 123 48.0
AL4G38990 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 2.1e-17 93.6 184 39.7
Carub.0004s2334 Capsella rubella HOM05D004369 ORTHO05D004907 8.2e-17 91.7 198 40.4
SGA_v2.0_scaffold106G30551 Striga asiatica HOM05D004369 ORTHO05D004907 8.2e-17 91.7 226 37.2
MSTRG.10776 Avicennia marina HOM05D004369 ORTHO05D004907 4.0e-16 89.4 237 39.7
HPP92_014347 Vanilla planifolia HOM05D004369 ORTHO05D004907 6.9e-16 88.6 177 41.2
unitig_21.g20674 Utricularia gibba HOM05D004369 ORTHO05D004907 4.5e-15 85.9 243 35.4
SHI12275 Sapria himalayana HOM05D004369 ORTHO05D004907 1.9e-13 80.5 133 45.9
HPP92_028709 Vanilla planifolia HOM05D004369 ORTHO05D004907 1.6e-12 77.4 134 40.3
CDE04G0994 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 4.6e-12 75.9 165 40.6
CDE02G4522 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 3.9e-11 72.8 164 38.4
CDE08G1070 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 4.3e-10 69.3 161 37.9
Zm00001eb128970 Zea mays HOM05D004369 ORTHO05D004907 4.3e-10 69.3 189 36.5
SEGI_18240 Sequoiadendron giganteum HOM05D004369 ORTHO05D004907 5.7e-10 68.9 194 34.0
CAN.G128.96 Capsicum annuum HOM05D004369 ORTHO05D004907 7.4e-10 68.6 94 48.9
Os01g0278000 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 2.8e-09 66.6 80 50.0
unitig_744.g24165 Utricularia gibba HOM05D004369 ORTHO05D004907 4.8e-09 65.9 98 41.8
Os07g0686600 Oryza sativa ssp. japonica HOM05D015271 ORTHO05D020944 7.7e-07 58.5 92 42.4
Os11g0131100 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 7.7e-07 58.5 143 32.9
Os12g0127800 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 3.8e-06 56.2 84 45.2


User provided reference genes

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