Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 1.6e-65 252.7 135 100.0
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 1.4e-61 239.6 135 93.3
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 4.0e-56 221.5 138 86.2
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 4.0e-56 221.5 138 85.5
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 8.9e-56 220.3 138 85.5
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 3.4e-55 218.4 138 85.5
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 4.4e-55 218.0 138 85.5
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 4.4e-55 218.0 137 83.9
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 4.4e-55 218.0 137 83.9
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 5.8e-55 217.6 138 84.8
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 5.8e-55 217.6 138 84.8
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 7.5e-55 217.2 138 84.1
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 7.5e-55 217.2 138 84.1
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.2e-54 215.7 138 84.1
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 3.7e-54 214.9 140 82.1
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 4.9e-54 214.5 140 84.3
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 4.9e-54 214.5 138 83.3
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 4.9e-54 214.5 138 83.3
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 8.3e-54 213.8 141 83.7
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 1.4e-53 213.0 137 82.5
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.9e-53 212.6 138 81.2
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.4e-53 212.2 139 83.5
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.4e-53 212.2 139 83.5
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 2.4e-53 212.2 139 83.5
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 3.2e-53 211.8 138 82.6
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 3.2e-53 211.8 141 81.6
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 3.2e-53 211.8 139 84.2
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 4.1e-53 211.5 138 81.9
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 5.4e-53 211.1 141 82.3
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 7.0e-53 210.7 139 82.0
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 7.0e-53 210.7 140 82.1
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 7.0e-53 210.7 140 82.9
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 7.0e-53 210.7 139 82.7
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 9.2e-53 210.3 138 79.7
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 9.2e-53 210.3 138 82.6
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 1.2e-52 209.9 138 79.7
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 1.2e-52 209.9 139 81.3
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 1.2e-52 209.9 140 82.9
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 1.2e-52 209.9 139 80.6
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.6e-52 209.5 138 81.2
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 2.0e-52 209.1 142 80.3
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 2.7e-52 208.8 138 80.4
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 3.5e-52 208.4 138 79.0
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 3.5e-52 208.4 139 82.0
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 3.5e-52 208.4 138 81.2
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 4.6e-52 208.0 139 82.7
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 6.0e-52 207.6 140 78.6
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 6.0e-52 207.6 137 80.3
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 6.0e-52 207.6 138 80.4
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 6.0e-52 207.6 139 81.3
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.7e-51 206.1 138 79.0
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 2.3e-51 205.7 137 79.6
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 2.3e-51 205.7 143 79.0
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 3.0e-51 205.3 139 80.6
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 3.0e-51 205.3 138 81.2
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 3.0e-51 205.3 139 82.0
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 3.9e-51 204.9 140 80.0
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 5.0e-51 204.5 143 78.3
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 6.6e-51 204.1 137 78.1
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 8.6e-51 203.8 137 78.8
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 1.1e-50 203.4 143 76.2
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 1.1e-50 203.4 138 81.2
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 1.5e-50 203.0 139 80.6
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 1.5e-50 203.0 138 80.4
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 1.5e-50 203.0 139 79.9
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 4.3e-50 201.4 139 79.9
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 5.6e-50 201.1 140 78.6
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 1.6e-49 199.5 141 78.0
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 2.8e-49 198.7 139 77.7
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 2.8e-49 198.7 139 77.7
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 3.6e-49 198.4 138 76.8
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 4.7e-49 198.0 148 75.0
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 4.7e-49 198.0 138 76.1
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 8.1e-49 197.2 140 76.4
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 1.1e-48 196.8 147 72.1
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 1.1e-48 196.8 141 75.9
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 1.4e-48 196.4 164 67.1
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 1.8e-48 196.1 140 75.7
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 3.1e-48 195.3 141 75.2
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 4.0e-48 194.9 140 75.0
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 8.9e-48 193.7 140 75.7
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 1.2e-47 193.4 140 75.0
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.2e-47 193.4 138 77.5
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 1.5e-47 193.0 172 64.5
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 3.4e-47 191.8 160 65.6
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 9.8e-47 190.3 138 76.1
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 1.3e-46 189.9 149 69.8
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 1.3e-46 189.9 140 75.7
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 2.2e-46 189.1 151 68.9
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 2.2e-46 189.1 151 68.9
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 3.7e-46 188.3 168 63.7
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 3.7e-46 188.3 152 71.1
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 6.4e-46 187.6 140 72.1
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 8.3e-46 187.2 176 61.9
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.1e-45 186.8 144 70.8
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 5.4e-45 184.5 144 70.1
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 9.2e-45 183.7 141 73.8
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 1.2e-44 183.3 140 71.4
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 1.6e-44 183.0 152 67.1
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 2.7e-44 182.2 146 67.8
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 3.5e-44 181.8 155 65.8
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 3.5e-44 181.8 155 65.8
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 3.5e-44 181.8 133 75.2
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 3.5e-44 181.8 138 72.5
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 4.6e-44 181.4 148 67.6
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 6.0e-44 181.0 139 71.2
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 4.3e-42 174.9 131 71.8
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 4.3e-42 174.9 136 66.9
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 7.3e-42 174.1 112 84.8
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 2.3e-40 169.1 114 78.1
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 5.2e-40 167.9 131 70.2
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 1.7e-38 162.9 113 79.6
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 1.7e-38 162.9 166 54.8
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 8.4e-38 160.6 115 75.7
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 1.9e-37 159.5 139 64.0
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 1.9e-37 159.5 138 60.9
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 1.0e-35 153.7 113 75.2
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 5.1e-35 151.4 128 70.3
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 5.6e-34 147.9 133 59.4
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 9.6e-34 147.1 167 54.5
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 1.2e-33 146.7 112 73.2
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 2.1e-33 146.0 119 69.7
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 4.7e-33 144.8 131 63.4
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 3.1e-32 142.1 131 64.1
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 6.9e-32 141.0 131 61.8
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 1.7e-30 136.3 97 77.3
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 8.4e-30 134.0 111 70.3
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 8.4e-30 134.0 155 53.5
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 1.4e-29 133.3 132 56.8
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 4.2e-29 131.7 118 63.6
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 2.7e-28 129.0 105 66.7
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 3.5e-28 128.6 81 85.2
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.3e-27 125.9 80 83.8
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.1e-26 123.6 80 82.5
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.5e-26 122.5 80 81.2
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.6e-25 119.8 77 83.1
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.6e-25 118.6 76 84.2
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 1.1e-24 117.1 111 61.3
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 3.1e-24 115.5 85 74.1
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 2.0e-23 112.8 138 48.6
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 2.0e-23 112.8 69 82.6
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 2.6e-23 112.5 69 85.5
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 4.5e-23 111.7 85 71.8
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 9.9e-23 110.5 130 54.6
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 6.7e-19 97.8 69 72.5
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 2.1e-17 92.8 102 55.9
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 1.1e-16 90.5 70 70.0
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 2.4e-16 89.4 69 71.0
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 5.8e-15 84.7 57 78.9
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.2e-14 82.8 58 77.6
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 2.9e-14 82.4 133 40.6
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 6.4e-14 81.3 77 61.0
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 1.0e-11 73.9 72 56.9
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 1.0e-11 73.9 72 56.9
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 1.1e-08 63.9 53 62.3
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 5.3e-08 61.6 49 63.3
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 6.9e-08 61.2 51 60.8
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 1.2e-07 60.5 51 60.8


User provided reference genes

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