Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G173800 Manihot esculenta HOM05D006353 ORTHO05D007993 3.4e-242 841.3 429 100.0
Manes.09G116500 Manihot esculenta HOM05D006353 ORTHO05D007993 9.8e-125 451.1 383 64.5
Potri.016G134500 Populus trichocarpa HOM05D006353 ORTHO05D007993 2.7e-82 310.1 350 48.3
Sabra04G0151900 Salix brachista HOM05D006353 ORTHO05D007993 1.7e-76 290.8 350 47.1
Ciclev10012094m.g Citrus clementina HOM05D006353 ORTHO05D007993 1.1e-70 271.6 358 45.8
Thecc.04G154100 Theobroma cacao HOM05D006353 ORTHO05D007993 1.4e-67 261.2 350 44.0
Aa31LG5G23800 Aethionema arabicum HOM05D006353 ORTHO05D007993 7.4e-64 248.8 343 45.5
Atru.chr8.2382 Acer truncatum HOM05D006353 ORTHO05D007993 3.1e-62 243.4 354 41.5
Duzib212G0771 Durio zibethinus HOM05D006353 ORTHO05D007993 3.1e-62 243.4 347 43.2
A05p07550 Brassica napus HOM05D006353 ORTHO05D007993 9.1e-62 241.9 350 41.7
BraA05t19722Z Brassica rapa HOM05D006353 ORTHO05D007993 9.1e-62 241.9 350 41.7
Carub.0004s2049 Capsella rubella HOM05D006353 ORTHO05D007993 9.1e-62 241.9 350 42.3
BcaB02g09176 Brassica carinata HOM05D006353 ORTHO05D007993 1.2e-61 241.5 349 41.8
BcaC02g12001 Brassica carinata HOM05D006353 ORTHO05D007993 1.5e-61 241.1 349 41.5
BcaC01g05532 Brassica carinata HOM05D006353 ORTHO05D007993 2.0e-61 240.7 319 43.6
C03p25230 Brassica napus HOM05D006353 ORTHO05D007993 2.0e-61 240.7 351 43.0
BolC3t14918H Brassica oleracea HOM05D006353 ORTHO05D007993 2.0e-61 240.7 319 43.6
C04p09030 Brassica napus HOM05D006353 ORTHO05D007993 5.9e-61 239.2 349 41.5
BolC4t22493H Brassica oleracea HOM05D006353 ORTHO05D007993 5.9e-61 239.2 349 41.5
Thhalv10016859m.g Eutrema salsugineum HOM05D006353 ORTHO05D007993 5.9e-61 239.2 351 43.0
BraA03t11371Z Brassica rapa HOM05D006353 ORTHO05D007993 7.7e-61 238.8 319 42.9
A03p21360 Brassica napus HOM05D006353 ORTHO05D007993 1.0e-60 238.4 319 42.9
CARHR133200 Cardamine hirsuta HOM05D006353 ORTHO05D007993 1.7e-60 237.7 351 42.7
Sp4g20840 Schrenkiella parvula HOM05D006353 ORTHO05D007993 1.7e-60 237.7 351 42.5
AL4G35790 Arabidopsis lyrata HOM05D006353 ORTHO05D007993 2.9e-60 236.9 351 41.9
BcaB01g03677 Brassica carinata HOM05D006353 ORTHO05D007993 5.0e-60 236.1 320 44.4
Gohir.A10G149700 Gossypium hirsutum HOM05D006353 ORTHO05D007993 1.4e-59 234.6 351 38.7
THA.LOC104806639 Tarenaya hassleriana HOM05D006353 ORTHO05D007993 1.9e-59 234.2 328 42.4
AT2G38500 Arabidopsis thaliana HOM05D006353 ORTHO05D007993 9.4e-59 231.9 351 41.3
Gorai.011G129000 Gossypium raimondii HOM05D006353 ORTHO05D007993 6.1e-58 229.2 350 38.9
Gohir.D10G117100 Gossypium hirsutum HOM05D006353 ORTHO05D007993 1.8e-57 227.6 350 38.9
Cfa017056 Carpinus fangiana HOM05D006353 ORTHO05D007993 8.8e-57 225.3 326 40.8
Dinv25324 Davidia involucrata HOM05D006353 ORTHO05D007993 3.7e-55 219.9 352 38.6
GSVIVG01030203001 Vitis vinifera HOM05D006353 ORTHO05D007993 3.1e-54 216.9 338 40.8
CiPaw.09G219300 Carya illinoinensis HOM05D006353 ORTHO05D007993 4.1e-54 216.5 342 38.6
QL07p032560 Quercus lobata HOM05D006353 ORTHO05D007993 7.0e-54 215.7 323 41.5
TWI74G0177 Tripterygium wilfordii HOM05D006353 ORTHO05D007993 4.2e-51 206.5 352 39.5
Glyma.18G215200 Glycine max HOM05D006353 ORTHO05D007993 3.6e-50 203.4 343 39.1
BcaB01g03678 Brassica carinata HOM05D006353 ORTHO05D007993 4.7e-50 203.0 320 40.9
Phvul.008G084100 Phaseolus vulgaris HOM05D006353 ORTHO05D007993 2.3e-49 200.7 351 37.9
Lalb_Chr19g0124031 Lupinus albus HOM05D006353 ORTHO05D007993 3.0e-49 200.3 326 40.5
Rhsim05G0229500 Rhododendron simsii HOM05D006353 ORTHO05D007993 3.9e-49 199.9 350 38.9
RcHm_v2.0_Chr3g0460831 Rosa chinensis HOM05D006353 ORTHO05D007993 8.8e-49 198.7 353 38.0
Lj1g0007888 Lotus japonicus HOM05D006353 ORTHO05D007993 1.5e-48 198.0 325 40.0
Sc20g0006870 Simmondsia chinensis HOM05D006353 ORTHO05D007993 1.3e-47 194.9 319 38.2
Duzib151G0311 Durio zibethinus HOM05D006353 ORTHO05D007993 2.2e-47 194.1 285 40.0
arahy.Tifrunner.gnm1.ann1.0YL58U Arachis hypogaea HOM05D006353 ORTHO05D007993 2.8e-47 193.7 327 39.4
Haze_21157 Corylus avellana HOM05D006353 ORTHO05D007993 2.8e-47 193.7 298 38.9
Prupe.6G291400 Prunus persica HOM05D006353 ORTHO05D007993 6.3e-47 192.6 362 38.1
arahy.Tifrunner.gnm1.ann1.FA4IPG Arachis hypogaea HOM05D006353 ORTHO05D007993 8.2e-47 192.2 327 39.1
TAR636G2144 Trochodendron aralioides HOM05D006353 ORTHO05D007993 8.2e-47 192.2 350 35.4
Actinidia11518 Actinidia chinensis HOM05D006353 ORTHO05D007993 3.1e-46 190.3 357 38.7
EL10Ac7g17070 Beta vulgaris HOM05D006353 ORTHO05D007993 4.1e-46 189.9 317 38.2
AUR62006369 Chenopodium quinoa HOM05D006353 ORTHO05D007993 3.5e-45 186.8 326 35.6
Sc07g0005810 Simmondsia chinensis HOM05D006353 ORTHO05D007993 7.7e-45 185.7 324 37.7
VMungo1383G2355 Vigna mungo HOM05D006353 ORTHO05D007993 6.5e-44 182.6 305 38.4
vmacro20360 Vaccinium macrocarpon HOM05D006353 ORTHO05D007993 8.5e-44 182.2 345 35.9
FAN14G4939 Fragaria x ananassa HOM05D006353 ORTHO05D007993 1.5e-43 181.4 362 34.3
FvH4_6g10130 Fragaria vesca HOM05D006353 ORTHO05D007993 9.4e-43 178.7 355 34.4
FAN09G0411 Fragaria x ananassa HOM05D006353 ORTHO05D007993 1.6e-42 177.9 388 33.8
FAN05G4939 Fragaria x ananassa HOM05D006353 ORTHO05D007993 2.1e-42 177.6 354 33.6
CSS0001064 Camellia sinensis var. sinensis HOM05D006353 ORTHO05D007993 2.3e-41 174.1 300 38.7
Medtr7g072635 Medicago truncatula HOM05D006353 ORTHO05D007993 8.8e-41 172.2 353 34.6
Medtr7g072870 Medicago truncatula HOM05D006353 ORTHO05D007993 8.8e-41 172.2 353 34.6
Migut.J00057 Erythranthe guttata HOM05D006353 ORTHO05D007993 1.1e-38 165.2 338 33.1
CSS0032329 Camellia sinensis var. sinensis HOM05D006353 ORTHO05D007993 2.7e-37 160.6 258 40.3
Lsat_1_v5_gn_8_107941 Lactuca sativa HOM05D006353 ORTHO05D007993 7.2e-35 152.5 359 30.9
HanXRQChr14g0433401 Helianthus annuus HOM05D006353 ORTHO05D007993 9.4e-35 152.1 341 32.0
MD12G1185800 Malus domestica HOM05D006353 ORTHO05D007993 2.1e-34 151.0 361 34.1
Nn2g10337 Nelumbo nucifera HOM05D006353 ORTHO05D007993 6.1e-34 149.4 356 31.5
HanXRQChr16g0509461 Helianthus annuus HOM05D006353 ORTHO05D007993 1.8e-33 147.9 328 31.7
ECA236G3817 Erigeron canadensis HOM05D006353 ORTHO05D007993 4.0e-33 146.7 332 31.9
Hund19788 Selenicereus undatus HOM05D006353 ORTHO05D007993 8.8e-33 145.6 249 34.9
PSO384G2070 Papaver somniferum HOM05D006353 ORTHO05D007993 1.5e-32 144.8 378 30.2
MSTRG.18951 Avicennia marina HOM05D006353 ORTHO05D007993 1.3e-31 141.7 324 32.1
SalBow5G5035 Salvia bowleyana HOM05D006353 ORTHO05D007993 1.3e-31 141.7 324 33.6
SalBow5G5483 Salvia bowleyana HOM05D006353 ORTHO05D007993 1.3e-31 141.7 324 33.6
ECA248G0672 Erigeron canadensis HOM05D006353 ORTHO05D007993 8.3e-31 139.0 318 31.8
Ah.08g209640 Amaranthus hybridus HOM05D006353 ORTHO05D007993 1.1e-30 138.7 301 32.6
Eucgr.K01277 Eucalyptus grandis HOM05D006353 ORTHO05D007993 2.4e-30 137.5 358 30.7
FAN05G5674 Fragaria x ananassa HOM05D006353 ORTHO05D007993 2.4e-30 137.5 351 31.3
Dinv11379 Davidia involucrata HOM05D006353 ORTHO05D007993 7.0e-30 136.0 206 39.3
PSO339G6092 Papaver somniferum HOM05D006353 ORTHO05D007993 9.1e-30 135.6 378 29.6
Oeu026960.1 Olea europaea HOM05D006353 ORTHO05D007993 2.0e-29 134.4 318 32.7
AUR62029702 Chenopodium quinoa HOM05D006353 ORTHO05D007993 1.0e-28 132.1 285 31.9
CANSAT35G0573 Cannabis sativa HOM05D006353 ORTHO05D007993 2.3e-28 131.0 333 34.2
ClCG04G006410 Citrullus lanatus HOM05D006353 ORTHO05D007993 2.9e-28 130.6 357 33.9
CsaV3_4G027090 Cucumis sativus L. HOM05D006353 ORTHO05D007993 5.5e-27 126.3 370 34.1
PGR004G2035 Punica granatum HOM05D006353 ORTHO05D007993 8.0e-26 122.5 357 30.3
Sed0002935 Sechium edule HOM05D006353 ORTHO05D007993 1.0e-25 122.1 353 31.7
FAN02G1449 Fragaria x ananassa HOM05D006353 ORTHO05D007993 3.0e-25 120.6 296 32.8
PGSC0003DMG400004416 Solanum tuberosum HOM05D006353 ORTHO05D007993 5.2e-25 119.8 323 29.1
DCAR_018544 Daucus carota HOM05D006353 ORTHO05D007993 1.2e-24 118.6 272 32.0
Lsat_1_v5_gn_5_150140 Lactuca sativa HOM05D006353 ORTHO05D007993 2.0e-24 117.9 247 30.4
TPR.G26913 Trifolium pratense HOM05D006353 ORTHO05D007993 3.4e-24 117.1 182 39.0
HPP92_022856 Vanilla planifolia HOM05D006353 ORTHO05D007993 3.4e-24 117.1 319 27.9
Sopen09g010850 Solanum pennellii HOM05D006353 ORTHO05D007993 9.8e-24 115.5 324 29.0
COL.COLO4_16552 Corchorus olitorius HOM05D006353 ORTHO05D007993 2.7e-21 107.5 165 39.4
TAR383G0884 Trochodendron aralioides HOM05D006831 ORTHO05D008256 2.7e-21 107.5 342 27.5
MELO3C025210.2 Cucumis melo HOM05D006353 ORTHO05D007993 3.5e-21 107.1 290 33.8
Dinv30442 Davidia involucrata HOM05D006831 ORTHO05D008256 1.6e-18 98.2 364 26.1
Actinidia29043 Actinidia chinensis HOM05D006353 ORTHO05D007993 2.1e-18 97.8 183 40.4
Peaxi162Scf00038g00918 Petunia axillaris HOM05D006831 ORTHO05D008256 2.1e-18 97.8 347 24.5
COL.COLO4_30498 Corchorus olitorius HOM05D006831 ORTHO05D008256 1.8e-17 94.7 360 27.2
Ca_07754_v3 Cicer arietinum L. HOM05D006353 ORTHO05D007993 8.9e-17 92.4 261 33.0
Ca_29600_v3 Cicer arietinum L. HOM05D006353 ORTHO05D007993 8.9e-17 92.4 261 33.0
Psat3g120040 Pisum sativum HOM05D006353 ORTHO05D007993 4.4e-16 90.1 185 36.2
Duzib235G1306 Durio zibethinus HOM05D006831 ORTHO05D008256 5.8e-16 89.7 341 26.4
Nn6g35309 Nelumbo nucifera HOM05D006831 ORTHO05D008256 5.8e-16 89.7 335 23.9
BcaB02g09177 Brassica carinata HOM05D006353 ORTHO05D007993 1.7e-15 88.2 118 44.1
Atru.chr1.3517 Acer truncatum HOM05D006831 ORTHO05D008256 2.2e-15 87.8 364 24.7
QL05p020342 Quercus lobata HOM05D006831 ORTHO05D008256 2.2e-15 87.8 351 25.4
Lj5A54G57 Lonicera japonica HOM05D006831 ORTHO05D008256 2.9e-15 87.4 356 25.6
Zm00001eb368790 Zea mays HOM05D006353 ORTHO05D007993 3.7e-15 87.0 354 26.8
CiPaw.02G146100 Carya illinoinensis HOM05D006831 ORTHO05D008256 6.4e-15 86.3 345 24.6
CsaV3_3G023650 Cucumis sativus L. HOM05D006831 ORTHO05D008256 6.4e-15 86.3 296 26.7
Prupe.3G060100 Prunus persica HOM05D006831 ORTHO05D008256 8.3e-15 85.9 342 24.3
Oeu050599.1 Olea europaea HOM05D006831 ORTHO05D008256 1.1e-14 85.5 345 24.9
AUR62031907 Chenopodium quinoa HOM05D006831 ORTHO05D008256 1.4e-14 85.1 338 25.4
Manes.11G034300 Manihot esculenta HOM05D006831 ORTHO05D008256 4.1e-14 83.6 284 26.1
TAR626G1633 Trochodendron aralioides HOM05D006831 ORTHO05D008256 4.1e-14 83.6 340 25.6
Gohir.D03G058400 Gossypium hirsutum HOM05D006831 ORTHO05D008256 7.0e-14 82.8 343 24.8
Cpa.g.c45395 Carica papaya HOM05D006353 ORTHO05D007993 9.2e-14 82.4 108 43.5
MBI03_g38281_MAGBIO Magnolia biondii HOM05D006353 ORTHO05D007993 9.2e-14 82.4 183 31.1
Actinidia21708 Actinidia chinensis HOM05D006831 ORTHO05D008256 1.6e-13 81.6 366 24.6
Sabra01G0151300 Salix brachista HOM05D006831 ORTHO05D008256 1.6e-13 81.6 280 26.1
ECA247G2417 Erigeron canadensis HOM05D006831 ORTHO05D008256 2.0e-13 81.3 310 24.8
Gorai.003G062200 Gossypium raimondii HOM05D006831 ORTHO05D008256 2.0e-13 81.3 343 24.8
PGSC0003DMG400002528 Solanum tuberosum HOM05D006831 ORTHO05D008256 2.7e-13 80.9 355 23.7
Potri.001G189400 Populus trichocarpa HOM05D006831 ORTHO05D008256 6.0e-13 79.7 280 26.1
DCAR_016191 Daucus carota HOM05D006831 ORTHO05D008256 7.8e-13 79.3 369 22.5
Gohir.A02G117700 Gossypium hirsutum HOM05D006831 ORTHO05D008256 1.3e-12 78.6 350 24.9
PSO210G6112 Papaver somniferum HOM05D006831 ORTHO05D008256 1.3e-12 78.6 307 27.4
Sopen03g039800 Solanum pennellii HOM05D006831 ORTHO05D008256 1.7e-12 78.2 353 22.9
CiPaw.01G232000 Carya illinoinensis HOM05D006831 ORTHO05D008256 2.3e-12 77.8 380 22.9
Solyc03g120970.3 Solanum lycopersicum HOM05D006831 ORTHO05D008256 2.3e-12 77.8 349 22.3
CANSAT56G0873 Cannabis sativa HOM05D006831 ORTHO05D008256 3.0e-12 77.4 378 23.0
CAN.G1143.6 Capsicum annuum HOM05D006831 ORTHO05D008256 3.0e-12 77.4 353 23.2
Potri.011G047800 Populus trichocarpa HOM05D006831 ORTHO05D008256 3.0e-12 77.4 349 23.2
MSTRG.11030 Avicennia marina HOM05D006831 ORTHO05D008256 6.6e-12 76.3 368 24.2
Ciclev10025849m.g Citrus clementina HOM05D006831 ORTHO05D008256 6.6e-12 76.3 349 24.6
Sabra11G0033200 Salix brachista HOM05D006831 ORTHO05D008256 1.1e-11 75.5 347 21.3
HanXRQChr10g0313251 Helianthus annuus HOM05D006831 ORTHO05D008256 1.5e-11 75.1 370 23.0
TWI12G0407 Tripterygium wilfordii HOM05D006831 ORTHO05D008256 1.5e-11 75.1 341 23.5
Medtr8g014330 Medicago truncatula HOM05D006831 ORTHO05D008256 1.9e-11 74.7 348 24.4
CSS0014632 Camellia sinensis var. sinensis HOM05D006831 ORTHO05D008256 3.3e-11 73.9 341 26.4
Lsat_1_v5_gn_1_36980 Lactuca sativa HOM05D006831 ORTHO05D008256 9.5e-11 72.4 370 23.5
PSO210G4514 Papaver somniferum HOM05D006831 ORTHO05D008256 1.2e-10 72.0 354 24.6
COL.COLO4_16553 Corchorus olitorius HOM05D006353 ORTHO05D007993 1.6e-10 71.6 117 40.2
Phvul.010G145700 Phaseolus vulgaris HOM05D006831 ORTHO05D008256 1.6e-10 71.6 364 23.6
ATR0681G315 Amborella trichopoda HOM05D006353 ORTHO05D007993 2.8e-10 70.9 164 29.3
EL10Ac9g21213 Beta vulgaris HOM05D006831 ORTHO05D008256 3.6e-10 70.5 349 24.4
Nitab4.5_0003003g0010 Nicotiana tabacum HOM05D006353 ORTHO05D007993 4.7e-10 70.1 109 40.4
Cfa003655 Carpinus fangiana HOM05D006831 ORTHO05D008256 6.2e-10 69.7 323 23.8
CiPaw.09G219500 Carya illinoinensis HOM05D006353 ORTHO05D007993 6.2e-10 69.7 92 45.7
Nitab4.5_0001469g0020 Nicotiana tabacum HOM05D006353 ORTHO05D007993 8.1e-10 69.3 102 41.2
Hma1.2p1_0430F.1_g151466 Hydrangea macrophylla HOM05D006831 ORTHO05D008256 1.4e-09 68.6 374 23.5
Peaxi162Scf00732g00043 Petunia axillaris HOM05D006353 ORTHO05D007993 6.8e-09 66.2 113 36.3
VMungo0331G1511 Vigna mungo HOM05D006831 ORTHO05D008256 1.2e-08 65.5 347 22.8
Cpa.g.sc109.6 Carica papaya HOM05D006831 ORTHO05D008256 1.5e-08 65.1 170 26.5
TPR.G29201 Trifolium pratense HOM05D006831 ORTHO05D008256 5.8e-08 63.2 370 21.6
ClCG00G002730 Citrullus lanatus HOM05D006831 ORTHO05D008256 1.7e-07 61.6 271 24.4
ClCG07G013280 Citrullus lanatus HOM05D006831 ORTHO05D008256 1.7e-07 61.6 271 24.4
Nitab4.5_0009505g0020 Nicotiana tabacum HOM05D006831 ORTHO05D008256 1.7e-07 61.6 131 29.8
Cc04_g02630 Coffea canephora HOM05D006831 ORTHO05D008256 4.9e-07 60.1 391 22.0
Lj3g0006655 Lotus japonicus HOM05D006831 ORTHO05D008256 6.4e-07 59.7 343 23.0
Nitab4.5_0001697g0120 Nicotiana tabacum HOM05D006353 ORTHO05D007993 6.4e-07 59.7 176 30.7
Nitab4.5_0012387g0010 Nicotiana tabacum HOM05D006831 ORTHO05D008256 1.1e-06 58.9 85 36.5
arahy.Tifrunner.gnm1.ann1.U3LBHC Arachis hypogaea HOM05D006831 ORTHO05D008256 1.4e-06 58.5 346 22.0
Psat4g221040 Pisum sativum HOM05D006831 ORTHO05D008256 1.9e-06 58.2 271 23.6
Haze_06254 Corylus avellana HOM05D006831 ORTHO05D008256 3.2e-06 57.4 261 23.4
Lsat_1_v5_gn_5_134400 Lactuca sativa HOM05D006831 ORTHO05D008256 3.2e-06 57.4 294 21.4
Ca_23268_v3 Cicer arietinum L. HOM05D006831 ORTHO05D008256 4.1e-06 57.0 301 21.9


User provided reference genes

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