Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G169600 Manihot esculenta HOM05D006830 ORTHO05D008119 4.1e-151 538.9 488 100.0
Potri.006G110400 Populus trichocarpa HOM05D006830 ORTHO05D008119 8.4e-72 275.4 235 66.4
Potri.016G139000 Populus trichocarpa HOM05D006830 ORTHO05D008119 4.6e-62 243.0 239 64.4
Sabra04G0154900 Salix brachista HOM05D006830 ORTHO05D008119 4.1e-58 229.9 241 61.4
Thecc.04G149300 Theobroma cacao HOM05D006830 ORTHO05D008119 4.1e-58 229.9 238 59.2
QL07p031724 Quercus lobata HOM05D006830 ORTHO05D008119 1.3e-56 224.9 255 52.9
Cfa017009 Carpinus fangiana HOM05D006830 ORTHO05D008119 2.1e-46 191.0 266 50.0
Haze_21197 Corylus avellana HOM05D006830 ORTHO05D008119 3.0e-45 187.2 258 50.0
GSVIVG01025871001 Vitis vinifera HOM05D006830 ORTHO05D008119 3.0e-45 187.2 232 50.9
PGR031G0539 Punica granatum HOM05D006830 ORTHO05D008119 8.8e-45 185.7 241 49.4
Lj1g0026994 Lotus japonicus HOM05D006830 ORTHO05D008119 3.3e-44 183.7 250 49.6
MD12G1191100 Malus domestica HOM05D006830 ORTHO05D008119 3.3e-44 183.7 243 49.4
TWI77G0580 Tripterygium wilfordii HOM05D006830 ORTHO05D008119 1.3e-43 181.8 241 48.5
FAN09G0658 Fragaria x ananassa HOM05D006830 ORTHO05D008119 3.7e-43 180.3 266 45.1
Prupe.6G296200 Prunus persica HOM05D006830 ORTHO05D008119 1.4e-42 178.3 247 47.4
Cpa.g.sc72.63 Carica papaya HOM05D006830 ORTHO05D008119 1.8e-42 177.9 229 50.7
Sc20g0007150 Simmondsia chinensis HOM05D006830 ORTHO05D008119 1.8e-42 177.9 246 45.9
Ciclev10011645m.g Citrus clementina HOM05D006830 ORTHO05D008119 9.1e-42 175.6 225 52.9
arahy.Tifrunner.gnm1.ann1.QV5EPW Arachis hypogaea HOM05D006830 ORTHO05D008119 3.4e-41 173.7 257 45.1
RcHm_v2.0_Chr3g0460131 Rosa chinensis HOM05D006830 ORTHO05D008119 4.5e-41 173.3 260 47.3
arahy.Tifrunner.gnm1.ann1.E2XN58 Arachis hypogaea HOM05D006830 ORTHO05D008119 1.3e-40 171.8 254 44.5
COL.COLO4_21252 Corchorus olitorius HOM05D006830 ORTHO05D008119 9.4e-39 165.6 210 53.3
FvH4_6g09531 Fragaria vesca HOM05D006830 ORTHO05D008119 2.1e-38 164.5 248 45.2
FAN14G4211 Fragaria x ananassa HOM05D006830 ORTHO05D008119 2.1e-38 164.5 248 45.2
Eucgr.A00784 Eucalyptus grandis HOM05D006830 ORTHO05D008119 4.7e-38 163.3 238 45.8
TWI74G0093 Tripterygium wilfordii HOM05D006830 ORTHO05D008119 7.9e-38 162.5 230 49.1
Atru.chr8.80 Acer truncatum HOM05D006830 ORTHO05D008119 1.0e-37 162.2 210 52.4
FAN05G1111 Fragaria x ananassa HOM05D006830 ORTHO05D008119 1.0e-37 162.2 248 45.6
TAR636G3618 Trochodendron aralioides HOM05D006830 ORTHO05D008119 1.8e-37 161.4 243 47.7
Medtr7g073700 Medicago truncatula HOM05D006830 ORTHO05D008119 3.0e-37 160.6 245 46.5
EL10Ac7g17129 Beta vulgaris HOM05D006830 ORTHO05D008119 6.7e-37 159.5 250 43.6
Gorai.006G236000 Gossypium raimondii HOM05D006830 ORTHO05D008119 6.7e-37 159.5 218 50.9
Dinv16956 Davidia involucrata HOM05D006830 ORTHO05D008119 3.3e-36 157.1 266 41.7
MBI15_g32284_MAGBIO Magnolia biondii HOM05D006830 ORTHO05D008119 7.4e-36 156.0 262 43.9
Gohir.D09G215500 Gossypium hirsutum HOM05D006830 ORTHO05D008119 2.2e-35 154.5 217 50.2
Ah.08g209170 Amaranthus hybridus HOM05D006830 ORTHO05D008119 4.8e-35 153.3 253 41.1
Duzib268G1795 Durio zibethinus HOM05D006830 ORTHO05D008119 1.4e-34 151.8 194 53.1
Thhalv10016585m.g Eutrema salsugineum HOM05D006830 ORTHO05D008119 1.4e-34 151.8 230 43.9
Lj2A57T75 Lonicera japonica HOM05D006830 ORTHO05D008119 1.4e-34 151.8 247 43.7
Actinidia29020 Actinidia chinensis HOM05D006830 ORTHO05D008119 1.2e-33 148.7 274 39.4
Carub.0004s2057 Capsella rubella HOM05D006830 ORTHO05D008119 1.3e-32 145.2 222 45.9
CSS0029082 Camellia sinensis var. sinensis HOM05D006830 ORTHO05D008119 2.9e-32 144.1 269 38.7
Duzib151G0823 Durio zibethinus HOM05D006830 ORTHO05D008119 2.9e-32 144.1 194 51.0
FAN02G1118 Fragaria x ananassa HOM05D006830 ORTHO05D008119 3.8e-32 143.7 236 44.1
AUR62006437 Chenopodium quinoa HOM05D006830 ORTHO05D008119 1.1e-31 142.1 250 40.0
Nn5g26811 Nelumbo nucifera HOM05D006830 ORTHO05D008119 1.1e-31 142.1 235 43.0
Sp4g20920 Schrenkiella parvula HOM05D006830 ORTHO05D008119 1.1e-31 142.1 229 42.8
THA.LOC104806205 Tarenaya hassleriana HOM05D006830 ORTHO05D008119 3.2e-31 140.6 244 42.2
AUR62029792 Chenopodium quinoa HOM05D006830 ORTHO05D008119 4.2e-31 140.2 250 38.8
Gohir.A09G213672 Gossypium hirsutum HOM05D006830 ORTHO05D008119 4.2e-31 140.2 200 49.5
A03p21400 Brassica napus HOM05D006830 ORTHO05D008119 9.4e-31 139.0 237 42.2
Nitab4.5_0000048g0180 Nicotiana tabacum HOM05D006830 ORTHO05D008119 9.4e-31 139.0 257 38.9
BraA03t11375Z Brassica rapa HOM05D006830 ORTHO05D008119 2.1e-30 137.9 237 42.6
Rhsim05G0232400 Rhododendron simsii HOM05D006830 ORTHO05D008119 2.1e-30 137.9 254 42.5
MELO3C009096.2 Cucumis melo HOM05D006830 ORTHO05D008119 2.7e-30 137.5 253 42.3
C03p25270 Brassica napus HOM05D006830 ORTHO05D008119 3.6e-30 137.1 232 42.2
BolC3t14921H Brassica oleracea HOM05D006830 ORTHO05D008119 3.6e-30 137.1 232 42.2
Glyma.18G216100 Glycine max HOM05D006830 ORTHO05D008119 6.1e-30 136.3 206 46.6
Sopen09g010200 Solanum pennellii HOM05D006830 ORTHO05D008119 6.1e-30 136.3 267 37.1
Solyc09g016940.4 Solanum lycopersicum HOM05D006830 ORTHO05D008119 8.0e-30 136.0 267 37.8
Lalb_Chr01g0023901 Lupinus albus HOM05D006830 ORTHO05D008119 1.8e-29 134.8 191 47.6
Nitab4.5_0001876g0080 Nicotiana tabacum HOM05D006830 ORTHO05D008119 1.5e-28 131.7 270 34.8
CsaV3_3G032990 Cucumis sativus L. HOM05D006830 ORTHO05D008119 2.6e-28 131.0 257 41.6
Oeu026939.4 Olea europaea HOM05D006830 ORTHO05D008119 4.4e-28 130.2 273 39.2
Glyma.09G273000 Glycine max HOM05D006830 ORTHO05D008119 9.7e-28 129.0 208 45.7
TPR.G24307 Trifolium pratense HOM05D006830 ORTHO05D008119 1.3e-27 128.6 202 42.6
ECA248G1589 Erigeron canadensis HOM05D006830 ORTHO05D008119 1.7e-27 128.3 251 38.6
Oeu030099.2 Olea europaea HOM05D006830 ORTHO05D008119 2.2e-27 127.9 254 42.1
BcaC01g05528 Brassica carinata HOM05D006830 ORTHO05D008119 1.4e-26 125.2 225 41.3
Peaxi162Scf00732g00253 Petunia axillaris HOM05D006830 ORTHO05D008119 1.6e-25 121.7 234 38.9
VMungo1383G1745 Vigna mungo HOM05D006830 ORTHO05D008119 2.7e-25 120.9 254 35.0
Migut.J00020 Erythranthe guttata HOM05D006830 ORTHO05D008119 3.5e-25 120.6 253 39.1
SGA_v2.0_scaffold85G26596 Striga asiatica HOM05D006830 ORTHO05D008119 4.5e-25 120.2 257 35.8
MSTRG.18932 Avicennia marina HOM05D006830 ORTHO05D008119 7.7e-25 119.4 322 32.3
Cc06_g00270 Coffea canephora HOM05D002857 ORTHO05D008347 7.7e-25 119.4 272 36.4
C03p25310 Brassica napus HOM05D006830 ORTHO05D008119 2.9e-24 117.5 228 38.2
Hma1.2p1_0537F.1_g174220 Hydrangea macrophylla HOM05D006830 ORTHO05D008119 6.5e-24 116.3 295 33.9
BcaB01g03674 Brassica carinata HOM05D006830 ORTHO05D008119 8.5e-24 115.9 232 39.2
Hund19745 Selenicereus undatus HOM05D006830 ORTHO05D008119 1.5e-23 115.2 222 39.2
vmacro20384 Vaccinium macrocarpon HOM05D006830 ORTHO05D008119 1.9e-23 114.8 258 37.6
ClCG10G022820 Citrullus lanatus HOM05D006830 ORTHO05D008119 3.2e-23 114.0 300 35.3
CARHR133260 Cardamine hirsuta HOM05D006830 ORTHO05D008119 9.4e-23 112.5 233 38.6
DCAR_023967 Daucus carota HOM05D006830 ORTHO05D008119 1.2e-22 112.1 272 34.9
Sed0004389 Sechium edule HOM05D006830 ORTHO05D008119 8.0e-22 109.4 203 41.4
AL4G35860 Arabidopsis lyrata HOM05D006830 ORTHO05D008119 1.0e-21 109.0 170 47.1
AT2G38580 Arabidopsis thaliana HOM05D006830 ORTHO05D008119 1.0e-21 109.0 170 47.6
Hund03691 Selenicereus undatus HOM05D006830 ORTHO05D008119 1.0e-21 109.0 254 37.4
Ca_07782_v3 Cicer arietinum L. HOM05D006830 ORTHO05D008119 1.8e-21 108.2 197 38.6
CSS0030660 Camellia sinensis var. sinensis HOM05D006830 ORTHO05D008119 3.0e-21 107.5 264 35.6
CDE04G1359 Ceratophyllum demersum HOM05D006830 ORTHO05D008119 3.0e-21 107.5 268 33.6
HanXRQChr01g0000521 Helianthus annuus HOM05D006830 ORTHO05D008119 3.5e-17 94.0 205 37.6
Phvul.008G080600 Phaseolus vulgaris HOM05D006830 ORTHO05D008119 3.5e-17 94.0 161 38.5
PSO384G2539 Papaver somniferum HOM05D006830 ORTHO05D008119 5.9e-17 93.2 222 35.6
PSO339G2021 Papaver somniferum HOM05D006830 ORTHO05D008119 3.2e-15 87.4 64 64.1
CANSAT60G0001 Cannabis sativa HOM05D006830 ORTHO05D008119 1.8e-13 81.6 67 65.7
unitig_22.g6617 Utricularia gibba HOM05D006830 ORTHO05D008119 4.0e-13 80.5 243 34.2
CSS0037917 Camellia sinensis var. sinensis HOM05D006830 ORTHO05D008119 5.2e-13 80.1 260 32.3
CANSAT21G1452 Cannabis sativa HOM05D006830 ORTHO05D008119 1.8e-10 71.6 249 29.7
ATR1127G221 Amborella trichopoda HOM05D006830 ORTHO05D008119 3.1e-10 70.9 341 26.7
HPP92_012572 Vanilla planifolia HOM05D006830 ORTHO05D008119 3.1e-10 70.9 226 32.3
Os03g0333000 Oryza sativa ssp. japonica HOM05D006830 ORTHO05D008119 2.0e-09 68.2 61 55.7
Lsat_1_v5_gn_5_151701 Lactuca sativa HOM05D006830 ORTHO05D008119 2.7e-09 67.8 115 41.7
Zm00001eb015900 Zea mays HOM05D006830 ORTHO05D008119 1.7e-08 65.1 60 56.7
HPP92_012541 Vanilla planifolia HOM05D006830 ORTHO05D008119 2.9e-08 64.3 142 35.9
BolC3t14925H Brassica oleracea HOM05D006830 ORTHO05D008119 3.8e-08 63.9 101 43.6
Actinidia11494 Actinidia chinensis HOM05D040087 ORTHO05D008119 2.1e-06 58.2 87 46.0
Aa31LG5G23390 Aethionema arabicum HOM05D006830 ORTHO05D008119 3.6e-06 57.4 107 37.4


User provided reference genes

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