Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 0.0e+00 1152.5 601 100.0
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 9.1e-302 1039.6 607 89.0
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 1.5e-283 979.2 599 84.1
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 2.0e-280 968.8 597 82.4
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 1.6e-277 959.1 598 81.6
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 1.7e-276 955.7 597 82.4
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 1.9e-275 952.2 601 81.5
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 3.2e-275 951.4 592 84.0
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 9.4e-275 949.9 637 78.0
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 1.2e-274 949.5 597 82.1
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.6e-274 949.1 591 82.7
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 2.7e-274 948.3 602 80.7
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.0e-273 946.4 597 81.9
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 1.8e-273 945.7 591 82.4
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.8e-273 945.7 597 81.6
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 4.0e-273 944.5 597 81.1
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 1.5e-272 942.6 593 82.0
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 7.5e-272 940.3 590 81.2
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 1.7e-271 939.1 593 81.8
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.7e-271 939.1 588 82.1
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 2.2e-271 938.7 590 81.2
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 2.2e-271 938.7 702 71.5
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 2.8e-271 938.3 589 80.6
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 3.7e-271 937.9 600 81.2
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 6.3e-271 937.2 589 81.0
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 8.3e-271 936.8 593 81.8
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 2.7e-269 931.8 590 80.3
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 7.7e-269 930.2 592 80.4
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 7.7e-269 930.2 592 81.4
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 1.3e-268 929.5 592 80.4
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 2.3e-268 928.7 604 79.5
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 2.3e-268 928.7 589 80.6
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 2.9e-268 928.3 591 80.2
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 3.8e-268 927.9 590 80.5
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 8.6e-268 926.8 604 79.5
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 3.3e-267 924.9 592 81.2
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 3.3e-267 924.9 584 80.1
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 5.6e-267 924.1 589 81.0
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 1.6e-266 922.5 590 80.8
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 1.8e-265 919.1 597 80.2
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.0e-265 918.3 592 79.7
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 4.0e-265 917.9 592 79.4
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 4.0e-265 917.9 592 79.9
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 6.8e-265 917.1 599 79.6
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 8.9e-265 916.8 590 79.8
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 2.6e-264 915.2 592 80.4
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 3.4e-264 914.8 599 79.3
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 4.4e-264 914.4 592 79.2
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 7.5e-264 913.7 589 80.0
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 6.4e-263 910.6 598 78.4
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.3e-260 902.9 565 81.1
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 3.0e-260 901.7 597 78.2
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 2.5e-259 898.7 598 76.4
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 2.1e-258 895.6 700 69.6
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 4.7e-258 894.4 592 77.5
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 1.0e-257 893.3 589 77.2
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.0e-257 893.3 597 76.7
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 7.5e-256 887.1 592 76.9
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 2.7e-253 878.6 591 76.0
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 3.5e-253 878.2 591 75.6
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 6.0e-253 877.5 591 75.6
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 6.0e-253 877.5 584 77.6
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 2.3e-252 875.5 591 76.0
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 3.9e-252 874.8 594 75.3
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 5.0e-252 874.4 594 75.3
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 8.6e-252 873.6 594 76.9
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 1.5e-251 872.8 593 75.2
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 2.5e-251 872.1 590 75.8
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 7.3e-251 870.5 591 75.8
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 1.2e-250 869.8 595 75.1
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 8.1e-250 867.1 596 74.5
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 1.2e-248 863.2 592 75.3
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 5.8e-248 860.9 594 74.4
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 7.5e-248 860.5 594 75.1
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 1.7e-247 859.4 593 74.2
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 3.7e-247 858.2 595 74.1
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 1.1e-246 856.7 592 73.6
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 1.1e-246 856.7 594 74.9
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 3.2e-246 855.1 594 74.1
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 3.2e-246 855.1 594 75.4
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 9.2e-246 853.6 563 78.2
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 7.8e-245 850.5 597 75.2
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 1.7e-244 849.4 591 74.3
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 8.6e-244 847.0 591 74.8
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 1.1e-243 846.7 597 73.2
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 1.1e-243 846.7 591 74.8
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 2.5e-243 845.5 597 73.2
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 3.3e-243 845.1 508 83.7
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 4.3e-243 844.7 576 75.9
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 7.3e-243 844.0 594 73.4
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 9.5e-243 843.6 596 74.0
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 2.1e-242 842.4 569 76.6
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 3.6e-242 841.6 591 73.3
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 8.1e-242 840.5 576 74.8
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.4e-241 839.7 571 75.5
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 3.1e-241 838.6 591 74.1
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 4.0e-241 838.2 613 71.5
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 6.8e-241 837.4 592 73.6
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 1.5e-240 836.3 597 73.0
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 2.0e-240 835.9 591 73.8
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 1.3e-239 833.2 597 71.4
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 6.4e-239 830.9 600 72.5
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 1.3e-236 823.2 597 71.5
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 1.3e-236 823.2 599 71.8
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 3.6e-234 815.1 594 72.9
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 8.9e-233 810.4 594 72.2
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 9.9e-232 807.0 593 71.7
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 1.3e-231 806.6 594 71.7
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 8.4e-231 803.9 594 71.7
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 4.2e-230 801.6 593 71.7
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 3.5e-229 798.5 594 71.2
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 3.5e-229 798.5 601 70.7
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 1.5e-227 793.1 511 78.5
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 3.4e-224 781.9 599 69.8
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 5.8e-216 754.6 570 69.1
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 9.3e-214 747.3 581 66.8
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 3.5e-213 745.3 588 66.5
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 1.5e-208 729.9 610 66.4
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 6.5e-207 724.5 595 65.0
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 5.9e-200 701.4 588 63.9
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 3.8e-191 672.2 500 69.6
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 5.3e-185 651.7 433 78.3
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 1.6e-181 640.2 445 74.4
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 9.1e-177 624.4 478 67.6
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 3.2e-174 615.9 507 67.1
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 3.6e-165 585.9 527 60.0
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 4.4e-163 578.9 381 78.5
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 5.2e-156 555.4 372 75.5
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 2.2e-154 550.1 573 57.9
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 8.0e-141 505.0 600 47.8
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 8.6e-135 485.0 400 65.8
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 2.6e-131 473.4 321 75.4
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 3.6e-117 426.4 310 71.3
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 4.0e-116 422.9 252 85.3
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 3.6e-109 399.8 513 45.8
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 2.9e-98 363.6 574 39.9
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 4.2e-97 359.8 230 77.4
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.7e-90 337.8 232 75.0
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 5.1e-79 299.7 257 65.0
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 3.7e-77 293.5 210 70.5
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 2.7e-64 250.8 257 50.6
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 3.1e-60 237.3 316 41.8
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 7.2e-49 199.5 114 86.0
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 1.4e-47 195.3 266 44.7
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 2.8e-45 187.6 127 71.7
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 6.1e-32 143.3 137 58.4
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 7.5e-30 136.3 187 46.5
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 1.7e-29 135.2 111 62.2
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 3.5e-27 127.5 109 60.6
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.5e-25 121.3 205 41.5
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 8.6e-18 96.3 81 63.0
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 1.1e-17 95.9 52 88.5
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 1.1e-17 95.9 52 88.5
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 4.7e-16 90.5 50 80.0
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 2.0e-14 85.1 52 84.6
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 1.4e-12 79.0 74 56.8
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 1.9e-12 78.6 74 56.8
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 1.6e-11 75.5 74 54.1
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.1e-11 75.1 55 67.3
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 1.1e-09 69.3 57 57.9
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 5.6e-09 67.0 57 59.6
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 2.1e-08 65.1 30 93.3
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 2.1e-08 65.1 30 93.3
Actinidia28545 Actinidia chinensis HOM05D004172 ORTHO05D018193 3.6e-08 64.3 85 44.7
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 2.0e-06 58.5 57 43.9


User provided reference genes

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