Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G168000 Manihot esculenta HOM05D007303 ORTHO05D009231 1.0e-50 203.0 92 100.0
Manes.09G121600 Manihot esculenta HOM05D007303 ORTHO05D009231 2.1e-16 89.0 48 83.3
Cfa017000 Carpinus fangiana HOM05D007303 ORTHO05D009231 2.8e-16 88.6 44 86.4
TWI53G0471 Tripterygium wilfordii HOM05D007303 ORTHO05D009231 4.7e-16 87.8 44 86.4
Cpa.g.sc0.70 Carica papaya HOM05D007303 ORTHO05D009231 6.1e-16 87.4 44 84.1
Haze_21228 Corylus avellana HOM05D007303 ORTHO05D009231 6.1e-16 87.4 43 88.4
COL.COLO4_05680 Corchorus olitorius HOM05D007303 ORTHO05D009231 1.4e-15 86.3 48 81.2
Duzib151G0876 Durio zibethinus HOM05D007303 ORTHO05D009231 1.4e-15 86.3 48 81.2
Sed0004919 Sechium edule HOM05D007303 ORTHO05D009231 1.8e-15 85.9 44 81.8
CiPaw.10G166700 Carya illinoinensis HOM05D007303 ORTHO05D009231 2.3e-15 85.5 48 79.2
MELO3C025258.2 Cucumis melo HOM05D007303 ORTHO05D009231 2.3e-15 85.5 46 84.8
CsaV3_4G027390 Cucumis sativus L. HOM05D007303 ORTHO05D009231 2.3e-15 85.5 46 84.8
ClCG04G006170 Citrullus lanatus HOM05D007303 ORTHO05D009231 3.0e-15 85.1 48 79.2
GSVIVG01010904001 Vitis vinifera HOM05D007303 ORTHO05D009231 3.0e-15 85.1 44 79.5
Gohir.A10G152200 Gossypium hirsutum HOM05D007303 ORTHO05D009231 4.0e-15 84.7 48 79.2
Gohir.A10G152700 Gossypium hirsutum HOM05D007303 ORTHO05D009231 4.0e-15 84.7 48 79.2
Gohir.D10G113500 Gossypium hirsutum HOM05D007303 ORTHO05D009231 4.0e-15 84.7 48 79.2
Gohir.D10G114000 Gossypium hirsutum HOM05D007303 ORTHO05D009231 4.0e-15 84.7 48 79.2
Gorai.011G125300 Gossypium raimondii HOM05D007303 ORTHO05D009231 4.0e-15 84.7 48 79.2
Gorai.011G125800 Gossypium raimondii HOM05D007303 ORTHO05D009231 4.0e-15 84.7 48 79.2
Eucgr.K01299 Eucalyptus grandis HOM05D007303 ORTHO05D009231 6.8e-15 84.0 44 81.8
THA.LOC104820511 Tarenaya hassleriana HOM05D007303 ORTHO05D009231 8.8e-15 83.6 43 83.7
CANSAT83G0001 Cannabis sativa HOM05D007303 ORTHO05D009231 1.2e-14 83.2 48 81.2
Aa31LG5G11350 Aethionema arabicum HOM05D007303 ORTHO05D009231 1.5e-14 82.8 43 79.1
Thecc.04G147800 Theobroma cacao HOM05D007303 ORTHO05D009231 1.5e-14 82.8 48 77.1
TWI74G1491 Tripterygium wilfordii HOM05D007303 ORTHO05D009231 2.0e-14 82.4 44 84.1
MD04G1177900 Malus domestica HOM05D007303 ORTHO05D009231 2.6e-14 82.0 48 79.2
MD12G1193500 Malus domestica HOM05D007303 ORTHO05D009231 2.6e-14 82.0 48 79.2
Prupe.6G297800 Prunus persica HOM05D007303 ORTHO05D009231 2.6e-14 82.0 48 79.2
Sc20g0007240 Simmondsia chinensis HOM05D007303 ORTHO05D009231 2.6e-14 82.0 48 77.1
Aa31LG5G18650 Aethionema arabicum HOM05D007303 ORTHO05D009231 3.4e-14 81.6 43 79.1
FAN14G3833 Fragaria x ananassa HOM05D007303 ORTHO05D009231 3.4e-14 81.6 69 60.9
Hma1.2p1_0174F.1_g076630 Hydrangea macrophylla HOM05D007303 ORTHO05D009231 3.4e-14 81.6 48 79.2
Ca_23107_v3 Cicer arietinum L. HOM05D007303 ORTHO05D009231 5.7e-14 80.9 44 81.8
FvH4_6g09420 Fragaria vesca HOM05D007303 ORTHO05D009231 5.7e-14 80.9 48 77.1
FAN05G5278 Fragaria x ananassa HOM05D007303 ORTHO05D009231 5.7e-14 80.9 48 77.1
FAN09G2915 Fragaria x ananassa HOM05D007303 ORTHO05D009231 5.7e-14 80.9 48 77.1
Nitab4.5_0001215g0100 Nicotiana tabacum HOM05D007303 ORTHO05D009231 5.7e-14 80.9 44 81.8
PGR031G1377 Punica granatum HOM05D007303 ORTHO05D009231 5.7e-14 80.9 48 77.1
RcHm_v2.0_Chr3g0459881 Rosa chinensis HOM05D007303 ORTHO05D009231 5.7e-14 80.9 48 77.1
Migut.L02050 Erythranthe guttata HOM05D007303 ORTHO05D009231 7.5e-14 80.5 44 79.5
TAR633G2342 Trochodendron aralioides HOM05D007303 ORTHO05D009231 7.5e-14 80.5 40 87.5
Oeu026929.1 Olea europaea HOM05D007303 ORTHO05D009231 9.8e-14 80.1 44 79.5
Phvul.008G079100 Phaseolus vulgaris HOM05D007303 ORTHO05D009231 9.8e-14 80.1 44 77.3
Glyma.09G271600 Glycine max HOM05D007303 ORTHO05D009231 1.7e-13 79.3 48 75.0
Glyma.18G217700 Glycine max HOM05D007303 ORTHO05D009231 1.7e-13 79.3 48 75.0
Medtr8g005360 Medicago truncatula HOM05D007303 ORTHO05D009231 1.7e-13 79.3 44 79.5
Hund19736 Selenicereus undatus HOM05D007303 ORTHO05D009231 1.7e-13 79.3 48 75.0
AUR62006451 Chenopodium quinoa HOM05D007303 ORTHO05D009231 2.2e-13 79.0 44 77.3
Sopen10g027350 Solanum pennellii HOM05D007303 ORTHO05D009231 2.2e-13 79.0 48 77.1
PGSC0003DMG400027701 Solanum tuberosum HOM05D007303 ORTHO05D009231 2.2e-13 79.0 48 77.1
CAN.G65.102 Capsicum annuum HOM05D007303 ORTHO05D009231 2.8e-13 78.6 48 72.9
THA.LOC104816152 Tarenaya hassleriana HOM05D007303 ORTHO05D009231 3.7e-13 78.2 43 79.1
BcaB04g18583 Brassica carinata HOM05D007303 ORTHO05D009231 4.9e-13 77.8 43 79.1
BcaB04g21249 Brassica carinata HOM05D007303 ORTHO05D009231 4.9e-13 77.8 43 79.1
BcaC01g04187 Brassica carinata HOM05D007303 ORTHO05D009231 4.9e-13 77.8 43 79.1
BcaC05g29598 Brassica carinata HOM05D007303 ORTHO05D009231 4.9e-13 77.8 43 79.1
BcaC09g47979 Brassica carinata HOM05D007303 ORTHO05D009231 4.9e-13 77.8 43 79.1
A05p40170 Brassica napus HOM05D007303 ORTHO05D009231 4.9e-13 77.8 43 79.1
C05p59250 Brassica napus HOM05D007303 ORTHO05D009231 4.9e-13 77.8 43 79.1
BolC1t05499H Brassica oleracea HOM05D007303 ORTHO05D009231 4.9e-13 77.8 43 79.1
BolC3t16676H Brassica oleracea HOM05D007303 ORTHO05D009231 4.9e-13 77.8 43 79.1
BolC5t34572H Brassica oleracea HOM05D007303 ORTHO05D009231 4.9e-13 77.8 43 79.1
BraA01t04340Z Brassica rapa HOM05D007303 ORTHO05D009231 4.9e-13 77.8 43 79.1
BraA03t12812Z Brassica rapa HOM05D007303 ORTHO05D009231 4.9e-13 77.8 43 79.1
Thhalv10021979m.g Eutrema salsugineum HOM05D007303 ORTHO05D009231 4.9e-13 77.8 43 79.1
Oeu035181.1 Olea europaea HOM05D007303 ORTHO05D009231 4.9e-13 77.8 44 77.3
Sp3g07060 Schrenkiella parvula HOM05D007303 ORTHO05D009231 4.9e-13 77.8 43 79.1
Ah.15g089810 Amaranthus hybridus HOM05D007303 ORTHO05D009231 6.3e-13 77.4 44 77.3
Duzib212G0558 Durio zibethinus HOM05D007303 ORTHO05D009231 6.3e-13 77.4 48 75.0
Psat6g005160 Pisum sativum HOM05D007303 ORTHO05D009231 6.3e-13 77.4 44 77.3
Cc06_g00200 Coffea canephora HOM05D007303 ORTHO05D009231 8.3e-13 77.0 44 77.3
DCAR_023961 Daucus carota HOM05D007303 ORTHO05D009231 8.3e-13 77.0 46 76.1
Os05g0481600 Oryza sativa ssp. japonica HOM05D007303 ORTHO05D009231 1.1e-12 76.6 39 82.1
SalBow4G1964 Salvia bowleyana HOM05D007303 ORTHO05D009231 1.1e-12 76.6 47 78.7
SalBow4G2888 Salvia bowleyana HOM05D007303 ORTHO05D009231 1.1e-12 76.6 47 78.7
Oeu007820.2 Olea europaea HOM05D007303 ORTHO05D009231 1.4e-12 76.3 44 75.0
AL3G19590 Arabidopsis lyrata HOM05D007303 ORTHO05D009231 1.8e-12 75.9 43 76.7
AT3G08610 Arabidopsis thaliana HOM05D007303 ORTHO05D009231 1.8e-12 75.9 43 76.7
CARHR082910 Cardamine hirsuta HOM05D007303 ORTHO05D009231 1.8e-12 75.9 43 76.7
Sabra04G0157400 Salix brachista HOM05D007303 ORTHO05D009231 5.4e-12 74.3 44 70.5
Lj3g0023771 Lotus japonicus HOM05D007303 ORTHO05D009231 9.2e-12 73.6 48 75.0
Carub.0003s0774 Capsella rubella HOM05D007303 ORTHO05D009231 1.2e-11 73.2 43 72.1
Potri.016G140900 Populus trichocarpa HOM05D007303 ORTHO05D009231 1.2e-11 73.2 48 66.7
PSO384G4262 Papaver somniferum HOM05D007303 ORTHO05D009231 1.6e-11 72.8 44 75.0
Lsat_1_v5_gn_8_109701 Lactuca sativa HOM05D007303 ORTHO05D009231 2.7e-11 72.0 42 71.4
arahy.Tifrunner.gnm1.ann1.RL3GXR Arachis hypogaea HOM05D007303 ORTHO05D009231 5.9e-11 70.9 48 68.8
arahy.Tifrunner.gnm1.ann1.ZQ7RI8 Arachis hypogaea HOM05D007303 ORTHO05D009231 5.9e-11 70.9 48 68.8
SEGI_21984 Sequoiadendron giganteum HOM05D007303 ORTHO05D009231 1.0e-10 70.1 43 67.4
CiPaw.01G273900 Carya illinoinensis HOM05D007303 ORTHO05D009231 3.8e-10 68.2 48 68.8
ECA236G3381 Erigeron canadensis HOM05D007303 ORTHO05D009231 5.0e-10 67.8 66 53.0
MBI15_g31036_MAGBIO Magnolia biondii HOM05D007303 ORTHO05D009231 5.0e-10 67.8 39 76.9
CSS0019093 Camellia sinensis var. sinensis HOM05D007303 ORTHO05D009231 1.5e-09 66.2 36 80.6
CSS0017493 Camellia sinensis var. sinensis HOM05D007303 ORTHO05D009231 1.9e-09 65.9 36 80.6
CSS0048723 Camellia sinensis var. sinensis HOM05D007303 ORTHO05D009231 1.9e-09 65.9 36 80.6
QL07p031324 Quercus lobata HOM05D007303 ORTHO05D009231 4.3e-09 64.7 44 59.1
A03p36440 Brassica napus HOM05D007303 ORTHO05D009231 5.6e-09 64.3 36 77.8
Zm00001eb290920 Zea mays HOM05D007303 ORTHO05D009231 1.6e-08 62.8 36 72.2
Oeu028466.1 Olea europaea HOM05D007303 ORTHO05D009231 4.7e-08 61.2 44 65.9
Cc00_g04100 Coffea canephora HOM05D007303 ORTHO05D009231 6.1e-08 60.8 44 65.9
Cc09_g07100 Coffea canephora HOM05D007303 ORTHO05D009231 8.0e-08 60.5 44 61.4


User provided reference genes

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