Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G167300 Manihot esculenta HOM05D007287 ORTHO05D008965 2.5e-130 468.8 235 100.0
Manes.09G120600 Manihot esculenta HOM05D007287 ORTHO05D008965 2.3e-99 365.9 235 79.6
Potri.016G142100 Populus trichocarpa HOM05D007287 ORTHO05D008965 2.9e-70 269.2 235 61.7
Potri.006G112600 Populus trichocarpa HOM05D007287 ORTHO05D008965 7.9e-68 261.2 235 60.9
Sabra04G0158300 Salix brachista HOM05D007287 ORTHO05D008965 3.9e-67 258.8 235 59.6
Thecc.04G001200 Theobroma cacao HOM05D007287 ORTHO05D008965 3.1e-64 249.2 246 56.1
Sabra06G0087700 Salix brachista HOM05D007287 ORTHO05D008965 2.0e-63 246.5 235 58.7
Ciclev10012636m.g Citrus clementina HOM05D007287 ORTHO05D008965 1.2e-55 220.7 240 53.8
Gohir.D02G000600 Gossypium hirsutum HOM05D007287 ORTHO05D008965 8.5e-54 214.5 236 50.4
Atru.chr8.50 Acer truncatum HOM05D007287 ORTHO05D008965 5.5e-53 211.8 242 52.9
Duzib268G0768 Durio zibethinus HOM05D007287 ORTHO05D008965 5.5e-53 211.8 235 51.5
Gorai.005G001000 Gossypium raimondii HOM05D007287 ORTHO05D008965 5.5e-53 211.8 235 50.2
QL07p030582 Quercus lobata HOM05D007287 ORTHO05D008965 7.2e-53 211.5 195 57.9
QL07p031465 Quercus lobata HOM05D007287 ORTHO05D008965 7.2e-53 211.5 195 57.9
Gohir.A02G000300 Gossypium hirsutum HOM05D007287 ORTHO05D008965 9.4e-53 211.1 235 50.6
Haze_21214 Corylus avellana HOM05D007287 ORTHO05D008965 3.0e-51 206.1 215 52.1
Prupe.6G299000 Prunus persica HOM05D007287 ORTHO05D008965 3.0e-51 206.1 246 49.6
Dinv16928 Davidia involucrata HOM05D007287 ORTHO05D008965 1.5e-50 203.8 242 50.0
TWI74G0480 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 1.1e-48 197.6 192 55.7
Cfa016991 Carpinus fangiana HOM05D007287 ORTHO05D008965 1.4e-48 197.2 215 50.7
Cpa.g.sc60.59 Carica papaya HOM05D007287 ORTHO05D008965 9.1e-48 194.5 245 50.6
RcHm_v2.0_Chr3g0459671 Rosa chinensis HOM05D007287 ORTHO05D008965 1.3e-46 190.7 240 49.2
FvH4_6g09290 Fragaria vesca HOM05D007287 ORTHO05D008965 3.2e-45 186.0 239 47.7
CsaV3_4G027460 Cucumis sativus L. HOM05D007287 ORTHO05D008965 4.7e-44 182.2 235 47.2
ClCG04G006100 Citrullus lanatus HOM05D007287 ORTHO05D008965 1.0e-43 181.0 235 46.8
GSVIVG01029850001 Vitis vinifera HOM05D007287 ORTHO05D008965 1.8e-43 180.3 234 47.4
FAN09G3442 Fragaria x ananassa HOM05D007287 ORTHO05D008965 3.0e-43 179.5 205 51.2
TWI77G0104 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 4.4e-42 175.6 241 44.8
Rhsim04G0120200 Rhododendron simsii HOM05D007287 ORTHO05D008965 8.2e-41 171.4 253 42.7
vmacro08958 Vaccinium macrocarpon HOM05D007287 ORTHO05D008965 8.2e-41 171.4 251 42.6
MD04G1179200 Malus domestica HOM05D007287 ORTHO05D008965 1.4e-40 170.6 246 45.1
Glyma.03G000900 Glycine max HOM05D007287 ORTHO05D008965 4.1e-40 169.1 193 50.8
CSS0027605 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 1.6e-39 167.2 253 44.3
Glyma.16G221800 Glycine max HOM05D007287 ORTHO05D008965 3.5e-39 166.0 193 50.8
CSS0006882 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 4.5e-39 165.6 250 44.0
Oeu039292.1 Olea europaea HOM05D007287 ORTHO05D008965 1.7e-38 163.7 199 48.2
Lsat_1_v5_gn_5_153761 Lactuca sativa HOM05D007287 ORTHO05D008965 8.5e-38 161.4 247 40.9
ECA248G0550 Erigeron canadensis HOM05D007287 ORTHO05D008965 1.9e-37 160.2 196 48.0
PGR031G1010 Punica granatum HOM05D007287 ORTHO05D008965 4.2e-37 159.1 196 48.5
Nn5g26760 Nelumbo nucifera HOM05D007287 ORTHO05D008965 9.4e-37 157.9 222 43.2
Eucgr.K01309 Eucalyptus grandis HOM05D007287 ORTHO05D008965 2.7e-36 156.4 196 44.9
Actinidia20808 Actinidia chinensis HOM05D007287 ORTHO05D008965 6.1e-36 155.2 215 44.7
VMungo0331G1821 Vigna mungo HOM05D007287 ORTHO05D008965 1.0e-35 154.5 199 48.2
CANSAT01G2619 Cannabis sativa HOM05D007287 ORTHO05D008965 1.4e-35 154.1 245 40.4
Peaxi162Scf00732g00008 Petunia axillaris HOM05D007287 ORTHO05D008965 4.0e-35 152.5 201 46.3
Sed0017124 Sechium edule HOM05D007287 ORTHO05D008965 1.2e-34 151.0 242 40.9
Phvul.010G060000 Phaseolus vulgaris HOM05D007287 ORTHO05D008965 2.6e-34 149.8 199 46.7
Nitab4.5_0002785g0030 Nicotiana tabacum HOM05D007287 ORTHO05D008965 7.5e-34 148.3 201 45.8
Lj3g0024711 Lotus japonicus HOM05D007287 ORTHO05D008965 3.7e-33 146.0 205 45.9
AUR62029815 Chenopodium quinoa HOM05D007287 ORTHO05D008965 8.3e-33 144.8 198 44.4
MELO3C025269.2 Cucumis melo HOM05D007287 ORTHO05D008965 7.0e-32 141.7 222 41.9
AUR62006459 Chenopodium quinoa HOM05D007287 ORTHO05D008965 1.2e-31 141.0 197 44.7
FAN02G3892 Fragaria x ananassa HOM05D001484 ORTHO05D008965 1.2e-31 141.0 192 43.2
Nitab4.5_0000356g0060 Nicotiana tabacum HOM05D007287 ORTHO05D008965 2.0e-31 140.2 201 43.3
Gohir.A05G415801 Gossypium hirsutum HOM05D007287 ORTHO05D008965 2.7e-31 139.8 228 41.7
TWI53G0571 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 1.5e-29 134.0 179 45.3
EL10Ac6g15481 Beta vulgaris HOM05D007287 ORTHO05D008965 3.2e-29 132.9 201 43.3
MSTRG.26833 Avicennia marina HOM05D007287 ORTHO05D008965 9.5e-29 131.3 247 35.6
Gohir.A05G415501 Gossypium hirsutum HOM05D007287 ORTHO05D008965 9.5e-29 131.3 234 38.5
Sc20g0007340 Simmondsia chinensis HOM05D007287 ORTHO05D008965 9.5e-29 131.3 200 45.5
Sc20g0007530 Simmondsia chinensis HOM05D007287 ORTHO05D008965 9.5e-29 131.3 200 45.5
TAR633G2304 Trochodendron aralioides HOM05D007287 ORTHO05D008965 9.5e-29 131.3 216 44.0
HanXRQChr11g0345021 Helianthus annuus HOM05D007287 ORTHO05D008965 1.2e-28 131.0 247 39.7
Ah.02g119260 Amaranthus hybridus HOM05D007287 ORTHO05D008965 2.1e-28 130.2 214 42.1
PGSC0003DMG400020867 Solanum tuberosum HOM05D007287 ORTHO05D008965 2.1e-28 130.2 229 38.0
MBI15_g22001_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 4.7e-28 129.0 240 38.8
PSO384G1025 Papaver somniferum HOM05D007287 ORTHO05D008965 8.0e-28 128.3 232 37.5
PSO339G4161 Papaver somniferum HOM05D007287 ORTHO05D008965 2.3e-27 126.7 288 36.1
MBI15_g05588_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 2.6e-26 123.2 235 38.7
TPR.G30730 Trifolium pratense HOM05D007287 ORTHO05D008965 1.7e-25 120.6 218 41.3
Sopen09g026010 Solanum pennellii HOM05D007287 ORTHO05D008965 3.7e-25 119.4 225 37.8
arahy.Tifrunner.gnm1.ann1.K8RLSB Arachis hypogaea HOM05D007287 ORTHO05D008965 4.9e-25 119.0 200 43.0
Solyc09g031900.4 Solanum lycopersicum HOM05D007287 ORTHO05D008965 6.3e-25 118.6 234 37.2
DCAR_014750 Daucus carota HOM05D007287 ORTHO05D008965 1.8e-24 117.1 244 38.9
CAN.G616.24 Capsicum annuum HOM05D007287 ORTHO05D008965 3.1e-24 116.3 192 39.1
arahy.Tifrunner.gnm1.ann1.HN5ZMV Arachis hypogaea HOM05D007287 ORTHO05D008965 7.0e-24 115.2 200 42.0
Aqoxy2G01629 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 3.3e-21 106.3 223 35.4
Medtr8g005070 Medicago truncatula HOM05D007287 ORTHO05D008965 3.3e-21 106.3 218 39.9
VMungo1127G2237 Vigna mungo HOM05D007287 ORTHO05D008965 9.5e-21 104.8 197 39.1
Cc06_g00120 Coffea canephora HOM05D007287 ORTHO05D008965 1.6e-20 104.0 171 43.9
Eucgr.A00853 Eucalyptus grandis HOM05D007287 ORTHO05D008965 4.4e-18 95.9 249 32.5
Lalb_Chr13g0290321 Lupinus albus HOM05D007287 ORTHO05D008965 5.7e-18 95.5 206 36.9
CDE07G0622 Ceratophyllum demersum HOM05D007287 ORTHO05D008965 2.9e-17 93.2 221 33.9
COL.COLO4_12535 Corchorus olitorius HOM05D007287 ORTHO05D008965 3.7e-17 92.8 151 40.4
Gohir.A12G000800 Gossypium hirsutum HOM05D007287 ORTHO05D008965 4.9e-17 92.4 139 41.0
Ca_18906_v3 Cicer arietinum L. HOM05D007287 ORTHO05D008965 1.8e-16 90.5 189 37.0
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 5.4e-16 89.0 216 31.9
HPP92_015439 Vanilla planifolia HOM05D007287 ORTHO05D008965 4.6e-15 85.9 159 36.5
SGA_v2.0_scaffold240G44057 Striga asiatica HOM05D007287 ORTHO05D008965 1.0e-14 84.7 157 39.5
DCAR_023246 Daucus carota HOM05D007287 ORTHO05D008965 1.7e-14 84.0 242 32.6
Aqoxy1G02348 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 3.0e-14 83.2 201 33.3
THA.LOC104806658 Tarenaya hassleriana HOM05D009615 ORTHO05D011760 8.6e-14 81.6 125 42.4
VMungo0464G2164 Vigna mungo HOM05D007287 ORTHO05D008965 1.1e-13 81.3 129 41.9
Psat2g191120 Pisum sativum HOM05D007287 ORTHO05D008965 4.3e-13 79.3 208 32.2
Zm00001eb078960 Zea mays HOM05D007287 ORTHO05D008965 1.2e-12 77.8 142 32.4
Aqoxy1G03140 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 1.4e-11 74.3 157 34.4
HanXRQChr10g0286721 Helianthus annuus HOM05D007287 ORTHO05D008965 1.8e-11 73.9 140 34.3
Actinidia32578 Actinidia chinensis HOM05D007287 ORTHO05D008965 2.3e-11 73.6 140 35.7
AT2G28330 Arabidopsis thaliana HOM05D009615 ORTHO05D011760 2.0e-10 70.5 141 36.9
Os11g0119900 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 2.0e-10 70.5 235 28.1
HPP92_018079 Vanilla planifolia HOM05D007287 ORTHO05D008965 3.4e-10 69.7 142 35.2
DCAR_011429 Daucus carota HOM05D054201 ORTHO05D008965 4.4e-10 69.3 228 31.6
Os12g0119700 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 4.4e-10 69.3 142 31.7
Sp4g11120 Schrenkiella parvula HOM05D009615 ORTHO05D011760 1.7e-09 67.4 79 48.1
AL4G21750 Arabidopsis lyrata HOM05D009615 ORTHO05D011760 2.2e-09 67.0 141 36.9
Thhalv10017369m.g Eutrema salsugineum HOM05D009615 ORTHO05D011760 3.7e-09 66.2 79 48.1
DCAR_010225 Daucus carota HOM05D054201 ORTHO05D008965 4.9e-09 65.9 224 32.1
Lalb_Chr12g0210711 Lupinus albus HOM05D007287 ORTHO05D008965 1.1e-08 64.7 86 46.5
Carub.0004s0923 Capsella rubella HOM05D009615 ORTHO05D011760 1.4e-08 64.3 145 37.9
TPR.G34860 Trifolium pratense HOM05D007287 ORTHO05D008965 2.4e-08 63.5 138 36.2
BraA07t29594Z Brassica rapa HOM05D009615 ORTHO05D011760 3.2e-08 63.2 83 43.4
COL.COLO4_11202 Corchorus olitorius HOM05D007287 ORTHO05D008965 3.2e-08 63.2 51 58.8
ATR1127G180 Amborella trichopoda HOM05D007287 ORTHO05D008965 4.1e-08 62.8 280 27.9
Os12g0119350 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 5.4e-08 62.4 235 27.2
A07p18870 Brassica napus HOM05D009615 ORTHO05D011760 9.2e-08 61.6 83 43.4
CARHR121260 Cardamine hirsuta HOM05D009615 ORTHO05D011760 9.2e-08 61.6 145 33.8
Ca_18907_v3 Cicer arietinum L. HOM05D007287 ORTHO05D008965 9.2e-08 61.6 115 40.0
Medtr4g079340 Medicago truncatula HOM05D007287 ORTHO05D008965 3.9e-06 56.2 119 31.9
BolC4t23815H Brassica oleracea HOM05D009615 ORTHO05D011760 5.0e-06 55.8 99 40.4
BolC4t23814H Brassica oleracea HOM05D009615 ORTHO05D011760 8.6e-06 55.1 85 40.0


User provided reference genes

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