Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G166301 Manihot esculenta HOM05D003440 ORTHO05D003953 4.6e-55 217.6 107 100.0
Sabra06G0088600 Salix brachista HOM05D003440 ORTHO05D003953 1.9e-21 105.9 102 57.8
Potri.016G143400 Populus trichocarpa HOM05D003440 ORTHO05D003953 9.6e-21 103.6 97 61.9
Potri.006G113700 Populus trichocarpa HOM05D003440 ORTHO05D003953 1.6e-20 102.8 102 56.9
TWI74G0415 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 6.9e-19 97.4 89 58.4
Cfa016982 Carpinus fangiana HOM05D003440 ORTHO05D003953 2.6e-18 95.5 91 59.3
Gohir.A02G000800 Gossypium hirsutum HOM05D003440 ORTHO05D003953 3.4e-18 95.1 94 52.1
Gohir.D02G001100 Gossypium hirsutum HOM05D003440 ORTHO05D003953 3.4e-18 95.1 94 52.1
Gorai.005G001600 Gossypium raimondii HOM05D003440 ORTHO05D003953 3.4e-18 95.1 94 52.1
QL07p030389 Quercus lobata HOM05D003440 ORTHO05D003953 9.9e-18 93.6 89 57.3
QL07p030748 Quercus lobata HOM05D003440 ORTHO05D003953 4.9e-17 91.3 89 56.2
Thecc.04G064200 Theobroma cacao HOM05D003440 ORTHO05D003953 1.1e-16 90.1 96 47.9
Atru.chr8.26 Acer truncatum HOM05D003440 ORTHO05D003953 1.6e-15 86.3 103 50.5
GSVIVG01029833001 Vitis vinifera HOM05D003440 ORTHO05D003953 7.9e-15 84.0 104 48.1
MBI15_g11745_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 2.3e-14 82.4 99 50.5
Haze_21225 Corylus avellana HOM05D003440 ORTHO05D003953 8.7e-14 80.5 99 51.5
Prupe.6G300400 Prunus persica HOM05D003440 ORTHO05D003953 1.1e-13 80.1 114 45.6
Cpa.g.sc0.29 Carica papaya HOM05D003440 ORTHO05D003953 1.9e-13 79.3 58 63.8
Aqoxy2G00611 Aquilegia oxysepala HOM05D003440 ORTHO05D003953 2.5e-13 79.0 65 58.5
Nn5g26738 Nelumbo nucifera HOM05D003440 ORTHO05D003953 3.3e-13 78.6 105 46.7
TAR633G0436 Trochodendron aralioides HOM05D003440 ORTHO05D003953 3.3e-13 78.6 95 50.5
PSO384G1065 Papaver somniferum HOM05D003440 ORTHO05D003953 4.3e-13 78.2 48 72.9
FAN02G2454 Fragaria x ananassa HOM05D003440 ORTHO05D003953 5.6e-13 77.8 48 70.8
Ciclev10013742m.g Citrus clementina HOM05D003440 ORTHO05D003953 1.3e-12 76.6 42 78.6
MD04G1180500 Malus domestica HOM05D003440 ORTHO05D003953 2.8e-12 75.5 94 46.8
CSS0039616 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 4.8e-12 74.7 93 49.5
CSS0018403 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 6.2e-12 74.3 93 49.5
MBI15_g37410_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 6.2e-12 74.3 59 64.4
Lsat_1_v5_gn_5_153521 Lactuca sativa HOM05D003440 ORTHO05D003953 8.2e-12 73.9 54 64.8
Dinv16919 Davidia involucrata HOM05D003440 ORTHO05D003953 1.1e-11 73.6 103 45.6
HanXRQChr01g0000641 Helianthus annuus HOM05D003440 ORTHO05D003953 1.4e-11 73.2 43 69.8
Eucgr.K01315 Eucalyptus grandis HOM05D003440 ORTHO05D003953 2.4e-11 72.4 56 62.5
PGR004G0491 Punica granatum HOM05D003440 ORTHO05D003953 3.1e-11 72.0 76 50.0
Carub.0024s0002 Capsella rubella HOM05D003440 ORTHO05D003953 9.0e-11 70.5 44 70.5
COL.COLO4_20128 Corchorus olitorius HOM05D003440 ORTHO05D003953 9.0e-11 70.5 102 45.1
AL6G10020 Arabidopsis lyrata HOM05D003440 ORTHO05D003953 1.5e-10 69.7 44 68.2
AT5G01015 Arabidopsis thaliana HOM05D003440 ORTHO05D003953 1.5e-10 69.7 44 68.2
Sp6g41240 Schrenkiella parvula HOM05D003440 ORTHO05D003953 2.6e-10 68.9 83 47.0
Lsat_1_v5_gn_8_108200 Lactuca sativa HOM05D003440 ORTHO05D003953 5.8e-10 67.8 62 51.6
Aa31LG5G11290 Aethionema arabicum HOM05D000046 ORTHO05D000457 1.3e-09 66.6 62 56.5
HanXRQChr11g0329301 Helianthus annuus HOM05D003440 ORTHO05D003953 4.9e-09 64.7 60 50.0
HanXRQChr11g0329311 Helianthus annuus HOM05D003440 ORTHO05D003953 6.5e-09 64.3 61 50.8
CANSAT25G3389 Cannabis sativa HOM05D003440 ORTHO05D003953 3.2e-08 62.0 101 43.6
QL07p030310 Quercus lobata HOM05D003440 ORTHO05D003953 9.3e-08 60.5 78 42.3
QL07p030704 Quercus lobata HOM05D003440 ORTHO05D003953 9.3e-08 60.5 78 42.3
Sabra04G0159300 Salix brachista HOM05D003440 ORTHO05D003953 2.1e-07 59.3 74 51.4
Aqoxy7G03194 Aquilegia oxysepala HOM05D003440 ORTHO05D003953 3.5e-07 58.5 95 42.1
ATR1127G118 Amborella trichopoda HOM05D003440 ORTHO05D003953 7.9e-07 57.4 45 55.6
Eucgr.H01385 Eucalyptus grandis HOM05D003440 ORTHO05D003953 7.9e-07 57.4 67 41.8
Migut.F02138 Erythranthe guttata HOM05D003440 ORTHO05D003953 1.8e-06 56.2 42 47.6
Os11g0121300 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 1.8e-06 56.2 58 36.2
Carub.0002s1098 Capsella rubella HOM05D003440 ORTHO05D003953 3.0e-06 55.5 92 34.8
SalBow6G6125 Salvia bowleyana HOM05D003440 ORTHO05D003953 3.0e-06 55.5 42 47.6
FAN05G5443 Fragaria x ananassa HOM05D003440 ORTHO05D003953 3.9e-06 55.1 76 35.5
SEGI_09135 Sequoiadendron giganteum HOM05D003440 ORTHO05D003953 3.9e-06 55.1 61 45.9
TWI75G0665 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 3.9e-06 55.1 92 34.8
Os12g0121000 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 5.1e-06 54.7 63 38.1
SalBow1G3495 Salvia bowleyana HOM05D003440 ORTHO05D003953 5.1e-06 54.7 73 34.2
A07p32790 Brassica napus HOM05D003440 ORTHO05D003953 6.7e-06 54.3 66 37.9
Cpa.g.sc39.4 Carica papaya HOM05D003440 ORTHO05D003953 6.7e-06 54.3 99 35.4
Thhalv10015102m.g Eutrema salsugineum HOM05D003440 ORTHO05D003953 6.7e-06 54.3 81 39.5
FvH4_6g09130 Fragaria vesca HOM05D003440 ORTHO05D003953 6.7e-06 54.3 44 59.1
FAN05G4201 Fragaria x ananassa HOM05D003440 ORTHO05D003953 6.7e-06 54.3 44 59.1
FAN09G2448 Fragaria x ananassa HOM05D000046 ORTHO05D000457 6.7e-06 54.3 44 59.1
FAN14G4320 Fragaria x ananassa HOM05D003440 ORTHO05D003953 6.7e-06 54.3 44 59.1
BcaB05g24106 Brassica carinata HOM05D003440 ORTHO05D003953 8.7e-06 53.9 92 31.5
CDE12G0097 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 8.7e-06 53.9 64 42.2


User provided reference genes

Program Settings