Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 6.7e-254 880.2 438 100.0
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 1.1e-219 766.5 436 86.9
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 8.9e-206 720.3 436 80.0
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 7.0e-203 710.7 437 79.6
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 5.2e-198 694.5 434 77.9
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 6.8e-198 694.1 433 78.5
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 2.6e-197 692.2 437 77.1
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 2.6e-197 692.2 436 77.5
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 5.8e-197 691.0 436 76.8
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 9.8e-197 690.3 437 78.9
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 1.7e-196 689.5 433 77.4
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 2.2e-196 689.1 436 76.1
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 8.3e-196 687.2 436 77.5
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 3.5e-194 681.8 433 76.4
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 1.3e-193 679.9 433 74.8
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 1.7e-193 679.5 433 76.4
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 2.3e-193 679.1 436 74.1
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 5.1e-193 677.9 433 75.8
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 1.1e-192 676.8 433 74.8
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 3.3e-192 675.2 436 75.2
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 1.6e-191 672.9 436 74.8
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 2.8e-191 672.2 430 76.3
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 3.1e-190 668.7 436 74.1
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 3.1e-190 668.7 435 74.7
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 5.2e-190 667.9 434 74.2
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 5.8e-189 664.5 435 73.3
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 1.3e-188 663.3 433 74.1
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 1.3e-188 663.3 437 72.8
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 1.3e-188 663.3 433 72.7
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 1.7e-188 662.9 432 73.6
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 2.9e-188 662.1 433 73.4
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 4.9e-188 661.4 437 73.0
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 6.4e-188 661.0 437 73.5
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 6.4e-188 661.0 436 75.7
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 1.1e-187 660.2 435 72.9
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 1.9e-187 659.4 435 73.3
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 3.2e-187 658.7 430 75.3
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 4.1e-187 658.3 433 71.8
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 9.2e-187 657.1 437 73.7
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.3e-185 652.5 438 72.8
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 1.1e-184 650.2 429 72.7
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 1.9e-184 649.4 434 75.3
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 9.5e-184 647.1 430 73.5
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 1.6e-183 646.4 434 72.8
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 4.7e-183 644.8 432 71.8
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 6.2e-183 644.4 435 72.9
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 1.4e-182 643.3 430 73.3
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 1.4e-182 643.3 430 73.5
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 1.8e-182 642.9 434 72.1
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 4.0e-182 641.7 430 73.0
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 6.8e-182 641.0 430 71.4
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 1.2e-181 640.2 433 72.7
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 1.5e-181 639.8 434 71.2
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 2.0e-181 639.4 430 73.0
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 3.4e-181 638.6 474 67.9
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 7.6e-181 637.5 432 72.5
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 1.3e-180 636.7 430 72.8
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 2.9e-180 635.6 434 72.1
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 3.8e-180 635.2 462 69.7
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 3.8e-180 635.2 430 70.7
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 6.4e-180 634.4 440 72.0
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 1.9e-179 632.9 441 72.3
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 4.2e-179 631.7 416 73.6
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 1.6e-178 629.8 432 71.1
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 7.8e-178 627.5 432 69.4
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 3.9e-177 625.2 433 71.1
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 5.1e-177 624.8 429 72.0
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 9.6e-176 620.5 472 66.9
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 1.4e-174 616.7 437 70.3
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 1.8e-174 616.3 474 65.6
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 1.8e-174 616.3 426 70.0
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 5.3e-174 614.8 416 72.4
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 5.3e-174 614.8 435 67.8
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 6.9e-174 614.4 526 59.7
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 1.7e-172 609.8 434 69.1
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 5.4e-171 604.7 432 67.4
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 1.2e-170 603.6 473 65.3
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 2.1e-167 592.8 429 67.4
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 4.8e-167 591.7 432 64.6
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 4.0e-166 588.6 436 67.0
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 1.1e-163 580.5 434 67.7
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 7.1e-163 577.8 435 67.1
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 9.3e-163 577.4 435 66.7
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 2.7e-162 575.9 436 66.7
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 3.9e-161 572.0 516 57.6
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 3.3e-160 568.9 426 69.0
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 1.1e-158 563.9 375 73.9
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.1e-158 563.9 440 64.8
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 1.1e-158 563.9 446 61.7
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 5.3e-158 561.6 421 67.0
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 9.9e-157 557.4 362 76.5
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 2.5e-155 552.7 380 71.8
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 5.5e-155 551.6 380 71.6
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 5.1e-153 545.0 376 70.7
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 4.3e-152 542.0 454 62.6
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 5.6e-152 541.6 379 69.7
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 4.2e-147 525.4 728 42.6
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 6.1e-146 521.5 362 71.5
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 9.4e-139 497.7 430 59.8
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 3.6e-138 495.7 698 42.8
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 8.8e-129 464.5 319 72.7
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 9.7e-128 461.1 300 75.3
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 2.8e-127 459.5 433 54.5
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 3.7e-127 459.1 339 69.3
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 1.2e-125 454.1 432 52.1
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 5.2e-121 438.7 341 65.1
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 3.3e-120 436.0 431 50.1
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 8.2e-119 431.4 285 73.7
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 2.0e-109 400.2 440 49.3
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 2.8e-98 363.2 223 81.6
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 1.8e-97 360.5 350 52.0
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 3.5e-85 319.7 244 66.8
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 2.5e-83 313.5 219 72.1
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 1.3e-76 291.2 237 67.1
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 1.3e-68 264.6 215 67.0
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 1.5e-67 261.2 283 52.3
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 4.3e-67 259.6 161 78.9
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 7.3e-67 258.8 430 35.3
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 1.2e-61 241.5 436 38.1
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 5.3e-57 226.1 138 76.1
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 8.4e-55 218.8 159 65.4
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 2.1e-53 214.2 135 78.5
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 4.8e-50 203.0 140 70.0
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 9.9e-48 195.3 139 69.1
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.5e-40 171.4 149 54.4
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 5.8e-40 169.5 329 32.8
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 8.4e-39 165.6 200 49.5
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 3.2e-38 163.7 193 50.3
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 5.0e-31 139.8 146 56.8
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 6.9e-25 119.4 97 58.8
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 9.0e-25 119.0 85 64.7
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 7.4e-19 99.4 55 78.2
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 9.7e-19 99.0 78 59.0
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 7.7e-16 89.4 71 59.2
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 2.9e-15 87.4 85 49.4
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 1.1e-14 85.5 71 57.7
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 7.2e-14 82.8 71 56.3
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 7.9e-13 79.3 53 75.5
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 4.8e-10 70.1 43 72.1
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 2.0e-08 64.7 42 66.7
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 2.9e-07 60.8 46 60.9
RcHm_v2.0_Chr2g0163341 Rosa chinensis HOM05D005218 ORTHO05D006657 3.8e-07 60.5 39 79.5
CDE07G1760 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.5e-06 58.5 49 51.0
MD00G1001200 Malus domestica HOM05D005218 ORTHO05D006657 2.5e-06 57.8 37 70.3


User provided reference genes

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