Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 6.3e-257 890.2 428 100.0
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 1.8e-155 553.1 436 64.0
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 4.1e-155 552.0 439 63.6
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 4.2e-152 542.0 445 63.6
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 2.0e-149 533.1 435 63.0
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 2.2e-148 529.6 443 61.9
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 8.5e-145 517.7 366 70.5
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 1.5e-144 516.9 364 72.0
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 5.5e-144 515.0 369 69.1
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 1.6e-143 513.5 366 69.4
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 8.8e-142 507.7 361 70.9
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 2.0e-141 506.5 442 59.0
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 2.0e-141 506.5 395 66.8
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 2.6e-141 506.1 392 65.6
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 2.6e-141 506.1 367 69.5
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 3.4e-141 505.8 362 70.7
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 1.4e-139 500.4 326 76.1
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 1.4e-139 500.4 410 62.9
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 4.1e-139 498.8 340 72.4
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 1.0e-137 494.2 325 74.8
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 2.9e-137 492.7 349 70.5
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 2.5e-136 489.6 348 69.0
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 4.7e-135 485.3 444 56.3
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 4.0e-134 482.3 324 75.6
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 6.8e-134 481.5 328 72.6
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 2.6e-133 479.6 333 72.4
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 2.6e-133 479.6 326 74.2
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 5.7e-133 478.4 428 58.9
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 5.7e-133 478.4 361 65.9
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 4.9e-132 475.3 325 71.7
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 8.3e-132 474.6 393 62.6
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 8.3e-132 474.6 334 73.1
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 7.0e-131 471.5 435 58.4
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 1.2e-130 470.7 331 70.4
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 1.2e-130 470.7 331 70.4
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 2.7e-130 469.5 325 72.0
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 3.5e-130 469.2 328 72.6
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.3e-129 467.2 341 66.6
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 5.0e-129 465.3 332 70.2
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 1.1e-128 464.2 323 72.4
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.1e-128 464.2 343 65.3
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 1.5e-128 463.8 338 69.2
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 1.5e-128 463.8 331 69.5
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 1.9e-128 463.4 340 67.9
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 9.5e-128 461.1 320 72.5
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 9.5e-128 461.1 320 72.5
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.2e-127 460.7 342 64.9
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 1.6e-127 460.3 342 65.8
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 1.6e-127 460.3 320 72.5
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 2.1e-127 459.9 320 69.1
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 3.6e-127 459.1 322 71.4
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 3.6e-127 459.1 435 57.5
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 6.1e-127 458.4 320 71.6
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 6.1e-127 458.4 320 71.6
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 6.1e-127 458.4 370 62.4
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 2.3e-126 456.4 338 67.8
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 3.1e-126 456.1 350 66.3
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 5.2e-126 455.3 348 66.4
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 6.8e-126 454.9 332 67.2
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 1.5e-125 453.8 353 65.2
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 2.0e-125 453.4 343 68.2
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 1.7e-124 450.3 329 67.8
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 1.7e-124 450.3 388 60.3
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 1.7e-124 450.3 368 62.5
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 2.9e-124 449.5 342 66.1
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.9e-124 449.5 333 65.5
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 2.9e-124 449.5 259 81.1
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 2.9e-124 449.5 339 66.4
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 8.3e-124 448.0 333 65.5
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 4.1e-123 445.7 354 64.1
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 1.2e-122 444.1 340 65.3
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 2.0e-122 443.4 319 70.2
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 2.7e-122 443.0 411 56.9
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 3.5e-122 442.6 413 57.9
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 1.0e-121 441.0 331 66.8
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 2.3e-121 439.9 380 61.1
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 3.9e-121 439.1 360 62.5
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 1.5e-120 437.2 363 63.1
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 1.9e-120 436.8 323 65.0
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 3.3e-120 436.0 347 65.4
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 1.5e-117 427.2 244 85.2
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 1.4e-115 420.6 426 54.0
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 1.6e-114 417.2 325 62.8
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 1.7e-113 413.7 346 59.5
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 5.6e-112 408.7 330 62.7
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 7.5e-109 398.3 323 61.3
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 2.3e-105 386.7 367 55.6
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 5.1e-105 385.6 325 62.5
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 8.6e-105 384.8 372 57.8
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 3.3e-104 382.9 384 54.4
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 2.1e-98 363.6 332 55.1
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 6.0e-98 362.1 299 63.2
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 5.6e-96 355.5 336 55.7
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 1.4e-94 350.9 278 64.0
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 1.8e-94 350.5 192 83.3
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 1.9e-91 340.5 230 69.6
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 7.1e-91 338.6 467 46.9
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 1.2e-85 321.2 345 49.3
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 3.2e-83 313.2 280 56.1
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 9.3e-83 311.6 193 76.2
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 2.7e-82 310.1 278 54.3
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 1.3e-73 281.2 304 46.1
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 5.1e-73 279.3 263 51.7
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 6.1e-66 255.8 196 59.2
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 3.0e-65 253.4 313 46.3
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 1.6e-63 247.7 231 51.5
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 4.5e-61 239.6 306 47.1
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 6.1e-58 229.2 123 83.7
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 7.4e-56 222.2 187 65.2
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 1.0e-52 211.8 203 54.7
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 1.0e-52 211.8 118 76.3
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 8.5e-52 208.8 114 88.6
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 5.3e-46 189.5 112 81.2
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 5.9e-37 159.5 264 39.4
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.3e-36 158.3 173 53.2
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 2.1e-34 151.0 99 71.7
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.4e-33 148.3 173 51.4
QL03p008982 Quercus lobata HOM05D000009 ORTHO05D000008 8.8e-33 145.6 229 40.2
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 3.7e-31 140.2 197 39.6
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 1.4e-25 121.7 62 85.5
TPR.G21490 Trifolium pratense HOM05D002799 ORTHO05D007076 3.0e-25 120.6 73 80.8
Nitab4.5_0000701g0050 Nicotiana tabacum HOM05D002799 ORTHO05D007076 6.8e-25 119.4 198 41.9
Cfa023729 Carpinus fangiana HOM05D002799 ORTHO05D007076 3.4e-24 117.1 314 27.4
Nitab4.5_0000793g0020 Nicotiana tabacum HOM05D002799 ORTHO05D007076 9.8e-24 115.5 150 46.0
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 3.7e-23 113.6 98 61.2
Haze_00593 Corylus avellana HOM05D002799 ORTHO05D007076 7.7e-21 105.9 61 86.9
Zm00001eb315690 Zea mays HOM05D002799 ORTHO05D007076 1.3e-20 105.1 56 76.8
Actinidia04566 Actinidia chinensis HOM05D002799 ORTHO05D007076 1.5e-19 101.7 199 38.2
Lj2C621T3 Lonicera japonica HOM05D002799 ORTHO05D007076 9.5e-19 99.0 63 76.2
FAN10G3554 Fragaria x ananassa HOM05D012649 ORTHO05D007076 6.1e-18 96.3 131 41.2
Cpa.g.sc67.52 Carica papaya HOM05D002799 ORTHO05D007076 3.0e-17 94.0 118 45.8
SEGI_38885 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 6.8e-17 92.8 78 57.7
VMungo1127G1706 Vigna mungo HOM05D002799 ORTHO05D007076 1.1e-14 85.5 180 35.0
QL03p009165 Quercus lobata HOM05D000009 ORTHO05D000008 2.4e-14 84.3 56 76.8
SHI36546 Sapria himalayana HOM05D000107 ORTHO05D000233 3.6e-10 70.5 70 55.7
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 8.9e-09 65.9 39 79.5


User provided reference genes

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