Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 2.6e-157 558.5 259 100.0
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 2.7e-141 505.4 259 91.1
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 2.2e-135 485.7 253 87.4
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 1.2e-133 479.9 253 85.8
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 2.0e-133 479.2 254 83.9
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 4.5e-133 478.0 254 84.6
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 5.9e-133 477.6 253 85.8
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 2.9e-132 475.3 254 85.4
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 1.1e-131 473.4 250 84.8
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 5.5e-131 471.1 255 85.1
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 1.6e-130 469.5 253 85.0
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 2.1e-130 469.2 260 83.5
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 2.8e-130 468.8 253 85.0
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 6.1e-130 467.6 255 83.9
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 1.4e-129 466.5 253 84.2
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 2.3e-129 465.7 256 83.6
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 4.0e-129 464.9 254 81.5
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 3.4e-128 461.8 253 84.2
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 7.5e-128 460.7 254 81.1
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 9.8e-128 460.3 252 82.9
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 1.3e-127 459.9 253 83.4
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 1.7e-127 459.5 253 83.8
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 2.2e-127 459.1 253 83.8
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 2.2e-127 459.1 256 82.8
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 2.8e-127 458.8 250 84.4
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 3.7e-127 458.4 250 84.4
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 3.7e-127 458.4 254 81.1
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 3.7e-127 458.4 252 84.5
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 4.9e-127 458.0 255 82.0
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 8.3e-127 457.2 250 84.0
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 8.3e-127 457.2 248 83.9
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.1e-126 456.8 250 84.0
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 1.8e-126 456.1 255 80.4
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 1.8e-126 456.1 254 80.7
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 2.4e-126 455.7 253 82.2
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 4.1e-126 454.9 253 82.6
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 9.2e-126 453.8 248 83.5
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 5.9e-125 451.1 245 83.3
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 1.0e-124 450.3 256 80.9
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 1.0e-124 450.3 262 80.5
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 1.3e-124 449.9 262 80.5
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 1.7e-124 449.5 253 81.4
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 6.6e-124 447.6 254 79.5
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 6.6e-124 447.6 235 85.5
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 8.6e-124 447.2 257 79.4
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 1.9e-123 446.0 253 80.6
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 2.5e-123 445.7 257 79.4
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 2.5e-123 445.7 257 79.4
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 2.5e-123 445.7 257 79.4
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 2.5e-123 445.7 252 80.6
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 3.3e-123 445.3 254 79.1
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 3.3e-123 445.3 254 79.1
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 4.3e-123 444.9 260 79.6
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 7.3e-123 444.1 253 80.6
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 7.3e-123 444.1 235 84.3
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 1.2e-122 443.4 250 81.6
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 1.2e-122 443.4 251 80.1
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 2.1e-122 442.6 247 80.6
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 2.8e-122 442.2 257 79.0
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 3.6e-122 441.8 251 78.9
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 4.7e-122 441.4 233 81.5
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 4.7e-122 441.4 249 79.9
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 4.7e-122 441.4 235 83.4
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 6.1e-122 441.0 242 81.0
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 8.0e-122 440.7 255 79.2
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 1.0e-121 440.3 253 77.9
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 1.0e-121 440.3 234 84.2
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.4e-121 439.9 255 78.8
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 1.8e-121 439.5 242 80.2
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 1.8e-121 439.5 253 79.1
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 4.0e-121 438.3 255 78.8
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 5.2e-121 438.0 254 78.0
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 6.8e-121 437.6 256 77.7
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 2.0e-120 436.0 234 84.2
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 2.0e-120 436.0 244 79.9
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 2.6e-120 435.6 250 80.0
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 3.4e-120 435.3 248 79.0
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 4.4e-120 434.9 251 78.5
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 4.4e-120 434.9 254 78.7
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 4.4e-120 434.9 245 78.8
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 7.5e-120 434.1 238 81.1
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 9.8e-120 433.7 244 79.9
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 9.8e-120 433.7 249 78.7
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 1.3e-119 433.3 233 83.3
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 1.7e-119 433.0 253 78.7
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.7e-119 433.0 245 78.0
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 1.7e-119 433.0 242 79.3
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 2.2e-119 432.6 249 80.3
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 3.7e-119 431.8 244 79.5
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 8.3e-119 430.6 243 78.6
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 8.3e-119 430.6 252 76.6
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 1.1e-118 430.3 231 83.5
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 1.1e-118 430.3 240 81.2
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 1.9e-118 429.5 253 78.3
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 1.9e-118 429.5 235 81.3
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 2.4e-118 429.1 256 77.3
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 2.4e-118 429.1 257 75.5
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 3.2e-118 428.7 235 81.3
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 4.1e-118 428.3 250 76.4
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 9.2e-118 427.2 254 77.6
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 1.2e-117 426.8 225 84.9
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 1.6e-117 426.4 243 78.2
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 2.0e-117 426.0 235 80.4
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 4.6e-117 424.9 254 77.6
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 6.0e-117 424.5 253 76.7
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 7.8e-117 424.1 232 80.6
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 7.8e-117 424.1 246 76.8
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 7.8e-117 424.1 250 76.4
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 1.0e-116 423.7 234 79.1
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 2.3e-116 422.5 252 77.4
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 5.0e-116 421.4 243 78.2
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 6.6e-116 421.0 245 77.1
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 1.5e-115 419.9 242 78.5
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 1.5e-115 419.9 249 75.9
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 1.9e-115 419.5 231 80.1
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 2.5e-115 419.1 244 76.6
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 4.3e-115 418.3 245 77.6
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 9.5e-115 417.2 231 79.2
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 9.5e-115 417.2 227 80.2
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 1.2e-114 416.8 248 77.0
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 1.2e-114 416.8 235 79.1
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 1.6e-114 416.4 243 74.9
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 3.6e-114 415.2 242 76.0
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 3.6e-114 415.2 250 74.8
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 4.7e-114 414.8 252 73.8
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 4.7e-114 414.8 242 76.0
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 1.4e-113 413.3 241 76.8
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.8e-113 412.9 242 76.4
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 5.2e-113 411.4 243 77.4
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 6.8e-113 411.0 246 76.4
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 1.2e-112 410.2 235 77.9
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 2.6e-112 409.1 243 75.7
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 2.6e-112 409.1 251 74.5
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 4.4e-112 408.3 224 79.9
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 9.8e-112 407.1 238 75.2
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 8.3e-111 404.1 246 75.6
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 1.2e-109 400.2 235 78.7
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 3.9e-108 395.2 255 70.2
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 5.6e-107 391.3 217 82.5
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 2.8e-106 389.0 234 73.5
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 3.4e-104 382.1 229 72.9
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 7.5e-104 380.9 228 73.7
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 1.1e-99 367.1 227 71.8
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 3.1e-97 359.0 245 64.1
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 7.6e-96 354.4 223 69.5
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 2.9e-95 352.4 255 65.5
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 2.9e-95 352.4 242 64.5
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 3.8e-95 352.1 238 66.0
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 7.1e-94 347.8 233 67.4
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 3.9e-92 342.0 240 65.0
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 5.6e-91 338.2 223 65.5
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 3.5e-85 318.9 183 79.8
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 3.1e-81 305.8 158 84.2
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 6.4e-79 298.1 256 58.2
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 1.1e-78 297.4 158 82.3
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 7.9e-61 238.0 178 61.8
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 2.2e-55 219.9 218 49.1
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.8e-52 210.3 232 47.4
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 4.5e-48 195.7 200 52.5
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 4.1e-41 172.6 96 82.3
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 4.1e-33 146.0 94 73.4
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 4.2e-30 136.0 116 55.2
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 5.3e-25 119.0 143 47.6
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 9.5e-14 81.6 48 64.6
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 8.9e-12 75.1 65 55.4


User provided reference genes

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