Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 2.2e-191 672.2 343 100.0
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 1.9e-158 562.8 343 83.7
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 4.9e-151 538.1 343 80.5
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 1.0e-148 530.4 343 77.8
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 8.6e-148 527.3 343 77.8
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 7.3e-147 524.2 349 75.6
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 1.2e-146 523.5 343 79.0
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 2.1e-146 522.7 343 77.8
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 2.4e-145 519.2 347 75.5
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 2.4e-145 519.2 342 76.9
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 3.1e-145 518.8 343 78.1
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 1.0e-140 503.8 355 74.4
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 2.3e-140 502.7 340 74.7
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 3.9e-140 501.9 336 76.2
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 8.7e-140 500.7 345 73.9
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 8.7e-140 500.7 343 74.9
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 1.9e-139 499.6 346 74.0
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 7.3e-139 497.7 345 73.6
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 9.6e-139 497.3 345 73.6
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 2.8e-138 495.7 347 74.1
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 1.1e-137 493.8 408 66.2
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 5.3e-137 491.5 343 71.7
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 5.8e-136 488.0 346 73.7
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 1.3e-135 486.9 347 71.2
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 6.4e-135 484.6 344 73.5
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 1.1e-134 483.8 345 73.3
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 1.9e-134 483.0 343 73.2
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 2.4e-134 482.6 343 74.1
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 5.4e-134 481.5 344 73.3
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 7.1e-134 481.1 343 71.1
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 6.0e-133 478.0 343 70.8
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 7.8e-133 477.6 413 63.2
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 3.9e-132 475.3 344 73.0
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 7.3e-131 471.1 344 69.8
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 5.8e-128 461.5 336 72.0
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 4.9e-127 458.4 343 70.8
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 6.4e-127 458.0 343 69.1
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 1.1e-126 457.2 344 68.9
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.4e-126 456.1 336 71.4
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 9.3e-126 454.1 345 70.4
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 1.6e-125 453.4 336 71.1
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 3.5e-125 452.2 344 69.2
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 2.3e-124 449.5 348 69.8
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 6.7e-124 448.0 344 68.9
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 6.7e-124 448.0 345 68.1
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 1.5e-123 446.8 344 68.9
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 3.3e-123 445.7 343 67.6
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 5.6e-123 444.9 344 68.9
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 9.6e-123 444.1 343 68.5
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 1.3e-122 443.7 343 66.5
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 1.1e-121 440.7 344 66.9
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 2.4e-121 439.5 343 67.3
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 2.6e-120 436.0 342 69.0
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 3.4e-120 435.6 343 67.6
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 5.8e-120 434.9 344 66.6
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 5.8e-120 434.9 332 67.2
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 2.2e-119 433.0 295 74.9
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 4.9e-119 431.8 343 65.6
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 6.4e-119 431.4 342 66.4
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 8.4e-119 431.0 343 65.3
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 1.1e-118 430.6 344 66.0
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 1.4e-118 430.3 344 66.0
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 3.2e-118 429.1 344 66.0
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 5.5e-118 428.3 345 66.1
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 2.1e-117 426.4 346 65.9
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 2.1e-117 426.4 347 66.3
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 2.7e-117 426.0 343 68.2
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.8e-116 423.3 388 61.1
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 1.8e-116 423.3 345 64.6
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 1.1e-115 420.6 347 65.7
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 1.5e-115 420.2 345 64.3
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 5.6e-115 418.3 349 65.6
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 7.4e-115 417.9 397 58.4
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 9.6e-115 417.5 350 64.6
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 1.6e-114 416.8 343 63.8
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 3.7e-114 415.6 326 67.2
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 8.2e-114 414.5 345 65.2
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.2e-112 410.6 345 65.2
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 2.0e-112 409.8 333 65.5
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 2.6e-112 409.5 348 63.8
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 4.5e-112 408.7 332 63.0
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 5.8e-112 408.3 357 65.8
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 6.5e-111 404.8 348 63.5
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 8.4e-111 404.4 343 63.0
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 1.1e-110 404.1 348 64.4
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 3.2e-110 402.5 343 63.0
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 3.2e-110 402.5 347 63.7
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 9.3e-110 401.0 343 62.4
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 1.2e-109 400.6 345 62.3
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 1.6e-109 400.2 346 64.7
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 3.5e-109 399.1 273 73.6
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 1.0e-108 397.5 346 62.7
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 1.1e-107 394.0 352 59.4
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 5.7e-107 391.7 342 62.3
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 9.7e-107 391.0 345 59.4
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 3.7e-106 389.0 344 61.3
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 3.7e-106 389.0 341 59.5
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 4.8e-106 388.7 344 61.9
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 3.1e-105 386.0 337 64.4
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 2.0e-104 383.3 348 61.5
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 1.7e-103 380.2 349 59.6
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 1.7e-103 380.2 347 59.7
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 2.2e-103 379.8 343 59.2
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 2.9e-103 379.4 348 61.5
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 8.5e-103 377.9 346 62.1
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 7.2e-102 374.8 344 60.2
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 1.6e-101 373.6 344 59.6
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 3.6e-101 372.5 321 64.5
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 1.8e-100 370.2 345 59.4
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 3.0e-100 369.4 343 58.6
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 5.1e-100 368.6 345 59.1
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 6.7e-100 368.2 345 60.0
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 1.5e-99 367.1 346 62.1
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 5.7e-99 365.2 349 56.2
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 9.7e-99 364.4 347 56.2
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 1.8e-97 360.1 347 58.2
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 1.5e-96 357.1 346 57.5
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 2.0e-96 356.7 335 59.7
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 5.9e-96 355.1 347 57.6
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 1.0e-95 354.4 347 57.1
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 1.0e-95 354.4 334 58.4
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 1.0e-95 354.4 334 58.4
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 1.7e-95 353.6 270 68.5
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 2.2e-95 353.2 350 57.4
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 2.2e-95 353.2 347 57.1
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 3.8e-95 352.4 343 56.0
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 1.1e-94 350.9 333 58.6
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 1.9e-94 350.1 345 58.3
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 1.9e-94 350.1 355 55.8
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 2.5e-94 349.7 348 57.5
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 2.5e-94 349.7 345 58.3
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 2.7e-93 346.3 247 71.3
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 1.8e-92 343.6 344 57.0
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 2.3e-92 343.2 345 57.4
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 2.3e-92 343.2 345 57.4
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 3.9e-92 342.4 350 54.0
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 1.1e-91 340.9 345 57.4
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 5.7e-91 338.6 343 55.7
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 3.7e-90 335.9 351 53.8
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 4.1e-89 332.4 261 68.2
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 6.5e-87 325.1 283 62.9
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 2.5e-70 270.0 343 51.0
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 5.2e-68 262.3 339 47.8
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 7.5e-67 258.5 247 56.7
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 2.2e-66 256.9 208 66.8
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 7.7e-64 248.4 347 43.5
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 1.3e-50 204.5 330 41.8
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 3.1e-36 156.8 410 31.0
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 5.8e-35 152.5 247 42.5
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 1.1e-28 131.7 154 50.6
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.7e-26 124.4 157 46.5
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 2.6e-19 100.5 238 32.8
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 2.6e-19 100.5 165 38.8
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 8.4e-18 95.5 100 53.0
unitig_8.g5063 Utricularia gibba HOM05D004688 ORTHO05D005490 2.5e-14 84.0 139 40.3
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 2.2e-10 70.9 351 25.9
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 6.4e-10 69.3 193 31.6
SMO367G0918 Selaginella moellendorffii HOM05D004688 ORTHO05D005490 2.4e-09 67.4 187 29.9
Pp3c18_2430 Physcomitrium patens HOM05D017133 ORTHO05D019609 3.9e-07 60.1 250 23.6


User provided reference genes

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